RNA–Protein interactions for RNA: ENST00000358552.7

NFIX-201, Transcript of nuclear factor I X, humanhuman

TSL 5 BASIC

Gene NFIX, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFIX-201ENST00000358552 NISCHQ9Y2I1 1504 aa29.77■■■□□ 2.36
NFIX-201ENST00000358552 CCDC180Q9P1Z9 1646 aa26.21■■□□□ 1.79
NFIX-201ENST00000358552 ZCCHC6Q5VYS8 1495 aaKnown RBP25.01■■□□□ 1.59
NFIX-201ENST00000358552 ABCC9O60706 1549 aa24.98■■□□□ 1.59
NFIX-201ENST00000358552 DCAF1Q9Y4B6 1507 aa24.76■■□□□ 1.55
NFIX-201ENST00000358552 DCAF8L2P0C7V8 631 aa24.61■■□□□ 1.53
NFIX-201ENST00000358552 MYO15BQ96JP2 1530 aa24.53■■□□□ 1.52
NFIX-201ENST00000358552 NACADO15069 1562 aa24.47■■□□□ 1.51
NFIX-201ENST00000358552 RB1CC1Q8TDY2 1594 aa24.33■■□□□ 1.49
NFIX-201ENST00000358552 SHROOM4Q9ULL8 1493 aa24.08■■□□□ 1.45
NFIX-201ENST00000358552 SCRIBQ14160 1630 aa23.94■■□□□ 1.42
NFIX-201ENST00000358552 UNC13AQ9UPW8 1703 aa23.89■■□□□ 1.41
NFIX-201ENST00000358552 BICRAQ9NZM4 1560 aa23.59■■□□□ 1.37
NFIX-201ENST00000358552 PABPN1Q86U42 306 aaKnown RBP eCLIP23.46■■□□□ 1.35
NFIX-201ENST00000358552 SUPT5HO00267 1087 aaKnown RBP23.32■■□□□ 1.32
NFIX-201ENST00000358552 CECR2Q9BXF3 1484 aa23.11■■□□□ 1.29
NFIX-201ENST00000358552 RSF1Q96T23 1441 aaPredicted RBP23.09■■□□□ 1.29
NFIX-201ENST00000358552 BAZ1AQ9NRL2 1556 aaPredicted RBP23.04■■□□□ 1.28
NFIX-201ENST00000358552 SMARCA4P51532 1647 aa22.97■■□□□ 1.27
NFIX-201ENST00000358552 MROH2BQ7Z745 1585 aa22.95■■□□□ 1.26
NFIX-201ENST00000358552 EIF4G1Q04637 1599 aaKnown RBP22.9■■□□□ 1.26
NFIX-201ENST00000358552 WIZO95785 1651 aa22.77■■□□□ 1.24
NFIX-201ENST00000358552 PEG3Q9GZU2 1588 aa22.74■■□□□ 1.23
NFIX-201ENST00000358552 SMARCA2P51531 1590 aa22.68■■□□□ 1.22
NFIX-201ENST00000358552 CC2D2AQ9P2K1 1620 aa22.66■■□□□ 1.22
NFIX-201ENST00000358552 ATAD2BQ9ULI0 1458 aa22.66■■□□□ 1.22
NFIX-201ENST00000358552 TOP2AP11388 1531 aaKnown RBP22.57■■□□□ 1.2
NFIX-201ENST00000358552 NCAPD3P42695 1498 aa22.57■■□□□ 1.2
NFIX-201ENST00000358552 HMGXB3Q12766 1538 aa22.51■■□□□ 1.19
NFIX-201ENST00000358552 BAZ1BQ9UIG0 1483 aaKnown RBP22.51■■□□□ 1.19
NFIX-201ENST00000358552 CHIC1Q5VXU3 224 aa22.43■■□□□ 1.18
NFIX-201ENST00000358552 DNAJC5BQ9UF47 199 aa22.37■■□□□ 1.17
NFIX-201ENST00000358552 CCDC88BA6NC98 1476 aa22.3■■□□□ 1.16
NFIX-201ENST00000358552 TRIM41Q8WV44 630 aa22.07■■□□□ 1.12
NFIX-201ENST00000358552 CFTRP13569 1480 aa21.95■■□□□ 1.1
NFIX-201ENST00000358552 CADPSQ9ULU8 1353 aa21.94■■□□□ 1.1
NFIX-201ENST00000358552 PRDM2Q13029 1718 aa21.92■■□□□ 1.1
NFIX-201ENST00000358552 LAMC3Q9Y6N6 1575 aa21.88■■□□□ 1.09
NFIX-201ENST00000358552 NESP48681 1621 aa21.83■■□□□ 1.08
NFIX-201ENST00000358552 WRNQ14191 1432 aaPredicted RBP eCLIP21.78■■□□□ 1.08
NFIX-201ENST00000358552 ABCC8Q09428 1581 aa21.72■■□□□ 1.07
NFIX-201ENST00000358552 PDS5BQ9NTI5 1447 aa21.69■■□□□ 1.06
NFIX-201ENST00000358552 FANCD2Q9BXW9 1451 aa21.68■■□□□ 1.06
NFIX-201ENST00000358552 EEA1Q15075 1411 aa21.67■■□□□ 1.06
NFIX-201ENST00000358552 KIF21AQ7Z4S6 1674 aa21.63■■□□□ 1.05
NFIX-201ENST00000358552 CEP164Q9UPV0 1460 aa21.59■■□□□ 1.05
NFIX-201ENST00000358552 TOP2BQ02880 1626 aa21.57■■□□□ 1.04
NFIX-201ENST00000358552 SYNJ1O43426 1573 aa21.53■■□□□ 1.04
NFIX-201ENST00000358552 BIVM-ERCC5R4GMW8 1640 aa21.53■■□□□ 1.04
NFIX-201ENST00000358552 CUX1P39880 1505 aa21.49■■□□□ 1.03
NFIX-201ENST00000358552 ERCC6Q03468 1493 aa21.48■■□□□ 1.03
NFIX-201ENST00000358552 FAM9AQ8IZU1 332 aaPredicted RBP21.46■■□□□ 1.03
NFIX-201ENST00000358552 DNMBPQ6XZF7 1577 aa21.44■■□□□ 1.02
NFIX-201ENST00000358552 LOC105371045A0A1W2PR82 267 aa21.44■■□□□ 1.02
NFIX-201ENST00000358552 URB2Q14146 1524 aaKnown RBP21.42■■□□□ 1.02
NFIX-201ENST00000358552 CSRNP3Q8WYN3 585 aa21.42■■□□□ 1.02
NFIX-201ENST00000358552 MRC2Q9UBG0 1479 aa21.42■■□□□ 1.02
NFIX-201ENST00000358552 TOPBP1Q92547 1522 aa21.41■■□□□ 1.02
NFIX-201ENST00000358552 SOGA1O94964 1423 aa21.39■■□□□ 1.02
NFIX-201ENST00000358552 THOC2Q8NI27 1593 aaKnown RBP21.36■■□□□ 1.01
NFIX-201ENST00000358552 WDR62O43379 1518 aa21.34■■□□□ 1.01
NFIX-201ENST00000358552 FGD5Q6ZNL6 1462 aa21.31■■□□□ 1
NFIX-201ENST00000358552 KIF27Q86VH2 1401 aa21.29■■□□□ 1
NFIX-201ENST00000358552 POLA1P09884 1462 aaPredicted RBP21.28■■□□□ 1
NFIX-201ENST00000358552 RUSC2Q8N2Y8 1516 aa21.23■□□□□ 0.99
NFIX-201ENST00000358552 GOLGA3Q08378 1498 aa21.22■□□□□ 0.99
NFIX-201ENST00000358552 KIF21BO75037 1637 aa21.21■□□□□ 0.99
NFIX-201ENST00000358552 TNIKQ9UKE5 1360 aa21.21■□□□□ 0.99
NFIX-201ENST00000358552 CUX2O14529 1486 aa21.17■□□□□ 0.98
NFIX-201ENST00000358552 RAD54L2Q9Y4B4 1467 aa21.17■□□□□ 0.98
NFIX-201ENST00000358552 TARBP1Q13395 1621 aaKnown RBP21.15■□□□□ 0.98
NFIX-201ENST00000358552 ABCA10Q8WWZ4 1543 aa21.14■□□□□ 0.97
NFIX-201ENST00000358552 WDR97A6NE52 1622 aa21.14■□□□□ 0.97
NFIX-201ENST00000358552 ERICH3Q5RHP9 1530 aa21.12■□□□□ 0.97
NFIX-201ENST00000358552 UBTFP17480 764 aaKnown RBP21.11■□□□□ 0.97
NFIX-201ENST00000358552 IFT140Q96RY7 1462 aa21.1■□□□□ 0.97
NFIX-201ENST00000358552 PRXQ9BXM0 1461 aa21.1■□□□□ 0.97
NFIX-201ENST00000358552 IGF1RP08069 1367 aa21.02■□□□□ 0.96
NFIX-201ENST00000358552 ABCA5Q8WWZ7 1642 aa21.02■□□□□ 0.95
NFIX-201ENST00000358552 EHMT2Q96KQ7 1210 aa21.01■□□□□ 0.95
NFIX-201ENST00000358552 TDRD9Q8NDG6 1382 aaKnown RBP20.99■□□□□ 0.95
NFIX-201ENST00000358552 CEP162Q5TB80 1403 aa20.99■□□□□ 0.95
NFIX-201ENST00000358552 RAPGEF2Q9Y4G8 1499 aa20.98■□□□□ 0.95
NFIX-201ENST00000358552 GAPVD1Q14C86 1478 aa20.97■□□□□ 0.95
NFIX-201ENST00000358552 ZNF608Q9ULD9 1512 aaPredicted RBP20.96■□□□□ 0.95
NFIX-201ENST00000358552 CARMIL1Q5VZK9 1371 aa20.95■□□□□ 0.94
NFIX-201ENST00000358552 AQRO60306 1485 aaKnown RBP eCLIP20.93■□□□□ 0.948e-7■■■■□ 22.8
NFIX-201ENST00000358552 PBRM1Q86U86 1689 aa20.92■□□□□ 0.94
NFIX-201ENST00000358552 EIF4G3O43432 1585 aaKnown RBP20.92■□□□□ 0.94
NFIX-201ENST00000358552 CUL7Q14999 1698 aa20.88■□□□□ 0.93
NFIX-201ENST00000358552 GRIN2BQ13224 1484 aa20.87■□□□□ 0.93
NFIX-201ENST00000358552 CLIP1P30622 1438 aa20.86■□□□□ 0.93
NFIX-201ENST00000358552 TRIM26Q12899 539 aaPredicted RBP20.75■□□□□ 0.91
NFIX-201ENST00000358552 MAGI1Q96QZ7 1491 aaPredicted RBP20.75■□□□□ 0.91
NFIX-201ENST00000358552 ADAMTS12P58397 1594 aa20.75■□□□□ 0.91
NFIX-201ENST00000358552 FHAD1B1AJZ9 1412 aa20.74■□□□□ 0.91
NFIX-201ENST00000358552 SNAPC4Q5SXM2 1469 aa20.74■□□□□ 0.91
NFIX-201ENST00000358552 VPS8Q8N3P4 1428 aa20.71■□□□□ 0.91
NFIX-201ENST00000358552 SYNJ2O15056 1496 aa20.66■□□□□ 0.9
NFIX-201ENST00000358552 APLP2Q06481 763 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms