RNA–Protein interactions for RNA: ENST00000357162.6

VPS13B-202, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13B, Length 14,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-202ENST00000357162 MYT1Q01538 1121 aa10.87□□□□□ -0.67
VPS13B-202ENST00000357162 PELP1Q8IZL8 1130 aaKnown RBP10.86□□□□□ -0.67
VPS13B-202ENST00000357162 NISCHQ9Y2I1 1504 aa10.55□□□□□ -0.72
VPS13B-202ENST00000357162 ZEB1P37275 1124 aaPredicted RBP10.36□□□□□ -0.75
VPS13B-202ENST00000357162 CCER1Q8TC90 406 aaPredicted RBP10.23□□□□□ -0.77
VPS13B-202ENST00000357162 CENPBP07199 599 aaPredicted RBP10.22□□□□□ -0.77
VPS13B-202ENST00000357162 TTBK1Q5TCY1 1321 aaPredicted RBP10.04□□□□□ -0.8
VPS13B-202ENST00000357162 YTHDC1Q96MU7 727 aaKnown RBP10.01□□□□□ -0.81
VPS13B-202ENST00000357162 DCAF8L2P0C7V8 631 aa10□□□□□ -0.81
VPS13B-202ENST00000357162 APLP2Q06481 763 aa9.99□□□□□ -0.81
VPS13B-202ENST00000357162 SUPT5HO00267 1087 aaKnown RBP9.94□□□□□ -0.82
VPS13B-202ENST00000357162 FAM9AQ8IZU1 332 aaPredicted RBP9.86□□□□□ -0.83
VPS13B-202ENST00000357162 ERICH6Q7L0X2 663 aa9.85□□□□□ -0.83
VPS13B-202ENST00000357162 NEFLP07196 543 aa9.83□□□□□ -0.84
VPS13B-202ENST00000357162 CLSPNQ9HAW4 1339 aa9.76□□□□□ -0.85
VPS13B-202ENST00000357162 PCGF6Q9BYE7 350 aa9.74□□□□□ -0.85
VPS13B-202ENST00000357162 HRCP23327 699 aa9.68□□□□□ -0.86
VPS13B-202ENST00000357162 TRIM26Q12899 539 aaPredicted RBP9.66□□□□□ -0.86
VPS13B-202ENST00000357162 MYT1LQ9UL68 1186 aa9.62□□□□□ -0.87
VPS13B-202ENST00000357162 SHROOM4Q9ULL8 1493 aa9.55□□□□□ -0.88
VPS13B-202ENST00000357162 DAXXQ9UER7 740 aaPredicted RBP9.54□□□□□ -0.88
VPS13B-202ENST00000357162 TRIM41Q8WV44 630 aa9.53□□□□□ -0.88
VPS13B-202ENST00000357162 RTL5Q5HYW3 569 aaPredicted RBP9.47□□□□□ -0.89
VPS13B-202ENST00000357162 UBTFP17480 764 aaKnown RBP9.33□□□□□ -0.92
VPS13B-202ENST00000357162 DCAF1Q9Y4B6 1507 aa9.27□□□□□ -0.93
VPS13B-202ENST00000357162 GLIPR1L2Q4G1C9 344 aa9.27□□□□□ -0.93
VPS13B-202ENST00000357162 DIEXFQ68CQ4 756 aaKnown RBP9.27□□□□□ -0.93
VPS13B-202ENST00000357162 ACIN1Q9UKV3 1341 aaKnown RBP9.26□□□□□ -0.93
VPS13B-202ENST00000357162 ZNF316A6NFI3 1004 aaPredicted RBP9.26□□□□□ -0.93
VPS13B-202ENST00000357162 CHIC1Q5VXU3 224 aa9.23□□□□□ -0.93
VPS13B-202ENST00000357162 CDK11AQ9UQ88 783 aaPredicted RBP9.16□□□□□ -0.94
VPS13B-202ENST00000357162 ANP32AP39687 249 aaKnown RBP9.12□□□□□ -0.95
VPS13B-202ENST00000357162 ANP32EQ9BTT0 268 aa9.11□□□□□ -0.95
VPS13B-202ENST00000357162 ANP32CO43423 234 aa9.09□□□□□ -0.95
VPS13B-202ENST00000357162 ANP32BQ92688 251 aaKnown RBP9.09□□□□□ -0.95
VPS13B-202ENST00000357162 EIF5BO60841 1220 aaKnown RBP9.05□□□□□ -0.96
VPS13B-202ENST00000357162 CCDC180Q9P1Z9 1646 aa9.05□□□□□ -0.96
VPS13B-202ENST00000357162 GTF3C3Q9Y5Q9 886 aa9.05□□□□□ -0.96
VPS13B-202ENST00000357162 EHMT2Q96KQ7 1210 aa9.02□□□□□ -0.97
VPS13B-202ENST00000357162 NEFMP07197 916 aa8.98□□□□□ -0.97
VPS13B-202ENST00000357162 EEA1Q15075 1411 aa8.98□□□□□ -0.97
VPS13B-202ENST00000357162 UPF2Q9HAU5 1272 aaKnown RBP8.95□□□□□ -0.98
VPS13B-202ENST00000357162 ZBTB47Q9UFB7 747 aaPredicted RBP8.95□□□□□ -0.98
VPS13B-202ENST00000357162 NEUROD1Q13562 356 aa8.91□□□□□ -0.98
VPS13B-202ENST00000357162 ARID4BQ4LE39 1312 aaPredicted RBP8.9□□□□□ -0.98
VPS13B-202ENST00000357162 ATP1B4Q9UN42 357 aaPredicted RBP8.9□□□□□ -0.98
VPS13B-202ENST00000357162 NCLP19338 710 aaKnown RBP8.89□□□□□ -0.99
VPS13B-202ENST00000357162 ERICH6BQ5W0A0 696 aa8.88□□□□□ -0.99
VPS13B-202ENST00000357162 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.87□□□□□ -0.99
VPS13B-202ENST00000357162 TNNT2P45379 298 aaPredicted RBP8.87□□□□□ -0.99
VPS13B-202ENST00000357162 DDRGK1Q96HY6 314 aa8.87□□□□□ -0.99
VPS13B-202ENST00000357162 HNRNPUL2Q1KMD3 747 aaKnown RBP8.84□□□□□ -0.99
VPS13B-202ENST00000357162 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.83□□□□□ -1
VPS13B-202ENST00000357162 ZCCHC6Q5VYS8 1495 aaKnown RBP8.83□□□□□ -1
VPS13B-202ENST00000357162 LOC105371045A0A1W2PR82 267 aa8.82□□□□□ -1
VPS13B-202ENST00000357162 TRIM44Q96DX7 344 aaPredicted RBP8.82□□□□□ -1
VPS13B-202ENST00000357162 BECN1Q14457 450 aa8.81□□□□□ -1
VPS13B-202ENST00000357162 TIMELESSQ9UNS1 1208 aa8.81□□□□□ -1
VPS13B-202ENST00000357162 PPARGC1BQ86YN6 1023 aaKnown RBP8.8□□□□□ -1
VPS13B-202ENST00000357162 SLC24A1O60721 1099 aa8.79□□□□□ -1
VPS13B-202ENST00000357162 TONSLQ96HA7 1378 aa8.78□□□□□ -1
VPS13B-202ENST00000357162 PPM1GO15355 546 aaPredicted RBP8.78□□□□□ -1
VPS13B-202ENST00000357162 HSP90AA1P07900 732 aaKnown RBP8.78□□□□□ -1
VPS13B-202ENST00000357162 GOLGA6L22H0YM25 854 aa8.77□□□□□ -1
VPS13B-202ENST00000357162 RANGAP1P46060 587 aaPredicted RBP8.77□□□□□ -1.01
VPS13B-202ENST00000357162 CSRNP3Q8WYN3 585 aa8.77□□□□□ -1.01
VPS13B-202ENST00000357162 CANXP27824 592 aaKnown RBP8.76□□□□□ -1.01
VPS13B-202ENST00000357162 CHMP4BQ9H444 224 aaKnown RBP8.73□□□□□ -1.01
VPS13B-202ENST00000357162 CCDC136Q96JN2 1154 aa8.73□□□□□ -1.01
VPS13B-202ENST00000357162 ITGAEP38570 1179 aa8.71□□□□□ -1.02
VPS13B-202ENST00000357162 FAM50AQ14320 339 aaKnown RBP8.71□□□□□ -1.02
VPS13B-202ENST00000357162 CFAP44Q96MT7 982 aa8.7□□□□□ -1.02
VPS13B-202ENST00000357162 PTMSP20962 102 aa8.69□□□□□ -1.02
VPS13B-202ENST00000357162 POLR3GLQ9BT43 218 aa8.68□□□□□ -1.02
VPS13B-202ENST00000357162 CDCA8Q53HL2 280 aa8.66□□□□□ -1.02
VPS13B-202ENST00000357162 RSF1Q96T23 1441 aaPredicted RBP8.66□□□□□ -1.02
VPS13B-202ENST00000357162 L1TD1Q5T7N2 865 aaKnown RBP8.66□□□□□ -1.02
VPS13B-202ENST00000357162 TRIM52Q96A61 297 aa8.66□□□□□ -1.02
VPS13B-202ENST00000357162 USP35Q9P2H5 1018 aa8.66□□□□□ -1.02
VPS13B-202ENST00000357162 NRDCO43847 1150 aa8.65□□□□□ -1.02
VPS13B-202ENST00000357162 CLIP1P30622 1438 aa8.65□□□□□ -1.02
VPS13B-202ENST00000357162 GOLGA3Q08378 1498 aa8.65□□□□□ -1.02
VPS13B-202ENST00000357162 SCAF1Q9H7N4 1312 aaKnown RBP8.65□□□□□ -1.03
VPS13B-202ENST00000357162 FKBP8Q14318 412 aa8.65□□□□□ -1.03
VPS13B-202ENST00000357162 MYH16Q9H6N6 1097 aa8.64□□□□□ -1.03
VPS13B-202ENST00000357162 BCANQ96GW7 911 aa8.63□□□□□ -1.03
VPS13B-202ENST00000357162 MS4A1P11836 297 aa8.63□□□□□ -1.03
VPS13B-202ENST00000357162 HNRNPUQ00839 825 aaKnown RBP eCLIP8.63□□□□□ -1.03
VPS13B-202ENST00000357162 CCER2I3L3R5 266 aa8.62□□□□□ -1.03
VPS13B-202ENST00000357162 TNIKQ9UKE5 1360 aa8.62□□□□□ -1.03
VPS13B-202ENST00000357162 CEP164Q9UPV0 1460 aa8.61□□□□□ -1.03
VPS13B-202ENST00000357162 PPP4R2Q9NY27 417 aa8.6□□□□□ -1.03
VPS13B-202ENST00000357162 CHAF1AQ13111 956 aaPredicted RBP8.6□□□□□ -1.03
VPS13B-202ENST00000357162 TMC1Q8TDI8 760 aa8.59□□□□□ -1.03
VPS13B-202ENST00000357162 GOLGA6L6A8MZA4 724 aa8.58□□□□□ -1.04
VPS13B-202ENST00000357162 FHAD1B1AJZ9 1412 aa8.58□□□□□ -1.04
VPS13B-202ENST00000357162 MRS2Q9HD23 443 aa8.57□□□□□ -1.04
VPS13B-202ENST00000357162 KAT6BQ8WYB5 2073 aa8.57□□□□□ -1.04
VPS13B-202ENST00000357162 CASC1Q6TDU7 716 aa8.57□□□□□ -1.04
VPS13B-202ENST00000357162 NOP58Q9Y2X3 529 aaKnown RBP8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms