RNA–Protein interactions for RNA: ENST00000356162.5

CNOT4-202, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 5 BASIC

Gene CNOT4, Length 2,594 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-202ENST00000356162 AEBP2Q6ZN18 517 aaPredicted RBP12.29□□□□□ -0.44
CNOT4-202ENST00000356162 CHIC1Q5VXU3 224 aa11.81□□□□□ -0.52
CNOT4-202ENST00000356162 SENP3Q9H4L4 574 aaPredicted RBP10.45□□□□□ -0.74
CNOT4-202ENST00000356162 PHF23Q9BUL5 403 aaPredicted RBP10.37□□□□□ -0.75
CNOT4-202ENST00000356162 FOXD1Q16676 465 aa9.73□□□□□ -0.85
CNOT4-202ENST00000356162 NISCHQ9Y2I1 1504 aa9.65□□□□□ -0.86
CNOT4-202ENST00000356162 PLPPR3Q6T4P5 718 aa9.5□□□□□ -0.89
CNOT4-202ENST00000356162 PPP6R1Q9UPN7 881 aa9.21□□□□□ -0.94
CNOT4-202ENST00000356162 ADRA2BP18089 450 aa9.18□□□□□ -0.94
CNOT4-202ENST00000356162 PIAS4Q8N2W9 510 aaPredicted RBP9.12□□□□□ -0.95
CNOT4-202ENST00000356162 MSH5O43196 834 aa9.05□□□□□ -0.96
CNOT4-202ENST00000356162 POTEDQ86YR6 584 aa9.02□□□□□ -0.97
CNOT4-202ENST00000356162 CCDC180Q9P1Z9 1646 aa8.63□□□□□ -1.03
CNOT4-202ENST00000356162 SCAF1Q9H7N4 1312 aaKnown RBP8.4□□□□□ -1.07
CNOT4-202ENST00000356162 MAPK8IP2Q13387 824 aaPredicted RBP8.39□□□□□ -1.07
CNOT4-202ENST00000356162 PPP4R3CPQ6ZMV5 832 aa8.34□□□□□ -1.07
CNOT4-202ENST00000356162 DMRT2Q9Y5R5 561 aa8.32□□□□□ -1.08
CNOT4-202ENST00000356162 ABCC9O60706 1549 aa8.29□□□□□ -1.08
CNOT4-202ENST00000356162 CNKSR2Q8WXI2 1034 aa8.16□□□□□ -1.1
CNOT4-202ENST00000356162 HOXD11P31277 338 aaPredicted RBP8.08□□□□□ -1.12
CNOT4-202ENST00000356162 ZCCHC6Q5VYS8 1495 aaKnown RBP8.07□□□□□ -1.12
CNOT4-202ENST00000356162 NACADO15069 1562 aa8.06□□□□□ -1.12
CNOT4-202ENST00000356162 NCBP3Q53F19 620 aaKnown RBP8.06□□□□□ -1.12
CNOT4-202ENST00000356162 RB1CC1Q8TDY2 1594 aa8.06□□□□□ -1.12
CNOT4-202ENST00000356162 MYO15BQ96JP2 1530 aa8.05□□□□□ -1.12
CNOT4-202ENST00000356162 RNF216Q9NWF9 866 aaPredicted RBP8.05□□□□□ -1.12
CNOT4-202ENST00000356162 DCAF1Q9Y4B6 1507 aa8.03□□□□□ -1.12
CNOT4-202ENST00000356162 NPM3O75607 178 aaKnown RBP7.96□□□□□ -1.14
CNOT4-202ENST00000356162 DCAF8L1A6NGE4 600 aa7.93□□□□□ -1.14
CNOT4-202ENST00000356162 KCNA4P22459 653 aa7.93□□□□□ -1.14
CNOT4-202ENST00000356162 DCAF8L2P0C7V8 631 aa7.9□□□□□ -1.15
CNOT4-202ENST00000356162 UNC13AQ9UPW8 1703 aa7.89□□□□□ -1.15
CNOT4-202ENST00000356162 SCRIBQ14160 1630 aa7.82□□□□□ -1.16
CNOT4-202ENST00000356162 BICRAQ9NZM4 1560 aa7.8□□□□□ -1.16
CNOT4-202ENST00000356162 DNAJC5BQ9UF47 199 aa7.79□□□□□ -1.16
CNOT4-202ENST00000356162 SHROOM4Q9ULL8 1493 aa7.79□□□□□ -1.16
CNOT4-202ENST00000356162 RNF39Q9H2S5 420 aa7.74□□□□□ -1.17
CNOT4-202ENST00000356162 PABPN1Q86U42 306 aaKnown RBP eCLIP7.69□□□□□ -1.18
CNOT4-202ENST00000356162 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.67□□□□□ -1.18
CNOT4-202ENST00000356162 CACNB1Q02641 598 aaPredicted RBP7.65□□□□□ -1.18
CNOT4-202ENST00000356162 C1QBPQ07021 282 aaKnown RBP7.63□□□□□ -1.19
CNOT4-202ENST00000356162 EIF4G1Q04637 1599 aaKnown RBP7.59□□□□□ -1.19
CNOT4-202ENST00000356162 SLC4A2P04920 1241 aa7.57□□□□□ -1.2
CNOT4-202ENST00000356162 U3KPZ7 1027 aaPredicted RBP7.54□□□□□ -1.2
CNOT4-202ENST00000356162 CC2D2AQ9P2K1 1620 aa7.54□□□□□ -1.2
CNOT4-202ENST00000356162 SLC4A1APQ9BWU0 796 aaKnown RBP7.51□□□□□ -1.21
CNOT4-202ENST00000356162 SMARCA4P51532 1647 aa7.5□□□□□ -1.21
CNOT4-202ENST00000356162 BAZ1AQ9NRL2 1556 aaPredicted RBP7.49□□□□□ -1.21
CNOT4-202ENST00000356162 CECR2Q9BXF3 1484 aa7.47□□□□□ -1.21
CNOT4-202ENST00000356162 SMARCA2P51531 1590 aa7.44□□□□□ -1.22
CNOT4-202ENST00000356162 PEG3Q9GZU2 1588 aa7.44□□□□□ -1.22
CNOT4-202ENST00000356162 HMGXB3Q12766 1538 aa7.42□□□□□ -1.22
CNOT4-202ENST00000356162 MROH2BQ7Z745 1585 aa7.42□□□□□ -1.22
CNOT4-202ENST00000356162 ATAD2BQ9ULI0 1458 aa7.42□□□□□ -1.22
CNOT4-202ENST00000356162 NCAPD3P42695 1498 aa7.4□□□□□ -1.22
CNOT4-202ENST00000356162 SPINK5Q9NQ38 1064 aaPredicted RBP7.38□□□□□ -1.23
CNOT4-202ENST00000356162 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.37□□□□□ -1.23
CNOT4-202ENST00000356162 HNRNPUL2Q1KMD3 747 aaKnown RBP7.37□□□□□ -1.23
CNOT4-202ENST00000356162 BAZ1BQ9UIG0 1483 aaKnown RBP7.37□□□□□ -1.23
CNOT4-202ENST00000356162 MYCNP04198 464 aaPredicted RBP7.35□□□□□ -1.23
CNOT4-202ENST00000356162 FOXD4L1Q9NU39 408 aa7.35□□□□□ -1.23
CNOT4-202ENST00000356162 WIZO95785 1651 aa7.35□□□□□ -1.23
CNOT4-202ENST00000356162 CAPN15O75808 1086 aa7.35□□□□□ -1.23
CNOT4-202ENST00000356162 SAMD1Q6SPF0 538 aaPredicted RBP7.34□□□□□ -1.23
CNOT4-202ENST00000356162 RSF1Q96T23 1441 aaPredicted RBP7.34□□□□□ -1.23
CNOT4-202ENST00000356162 APLP2Q06481 763 aa7.33□□□□□ -1.24
CNOT4-202ENST00000356162 TOP2AP11388 1531 aaKnown RBP7.31□□□□□ -1.24
CNOT4-202ENST00000356162 ZBTB22O15209 634 aa7.31□□□□□ -1.24
CNOT4-202ENST00000356162 DSG3P32926 999 aa7.29□□□□□ -1.24
CNOT4-202ENST00000356162 ZNF219Q9P2Y4 722 aaPredicted RBP7.27□□□□□ -1.25
CNOT4-202ENST00000356162 TRHP20396 242 aaPredicted RBP7.26□□□□□ -1.25
CNOT4-202ENST00000356162 LAMC3Q9Y6N6 1575 aa7.24□□□□□ -1.25
CNOT4-202ENST00000356162 PRDM2Q13029 1718 aa7.2□□□□□ -1.26
CNOT4-202ENST00000356162 ABCB7O75027 752 aa7.19□□□□□ -1.26
CNOT4-202ENST00000356162 NESP48681 1621 aa7.19□□□□□ -1.26
CNOT4-202ENST00000356162 CADPSQ9ULU8 1353 aa7.18□□□□□ -1.26
CNOT4-202ENST00000356162 ATF5Q9Y2D1 282 aaPredicted RBP7.17□□□□□ -1.26
CNOT4-202ENST00000356162 CCDC88BA6NC98 1476 aa7.17□□□□□ -1.26
CNOT4-202ENST00000356162 CFTRP13569 1480 aa7.16□□□□□ -1.26
CNOT4-202ENST00000356162 ERCC6Q03468 1493 aa7.16□□□□□ -1.26
CNOT4-202ENST00000356162 KIF21AQ7Z4S6 1674 aa7.16□□□□□ -1.26
CNOT4-202ENST00000356162 PDS5BQ9NTI5 1447 aa7.15□□□□□ -1.26
CNOT4-202ENST00000356162 THOC2Q8NI27 1593 aaKnown RBP7.14□□□□□ -1.27
CNOT4-202ENST00000356162 ATXN8OSP0DMR3 200 aa7.13□□□□□ -1.27
CNOT4-202ENST00000356162 POLA2Q14181 598 aa7.11□□□□□ -1.27
CNOT4-202ENST00000356162 CUX2O14529 1486 aa7.11□□□□□ -1.27
CNOT4-202ENST00000356162 FANCD2Q9BXW9 1451 aa7.11□□□□□ -1.27
CNOT4-202ENST00000356162 CEP164Q9UPV0 1460 aa7.11□□□□□ -1.27
CNOT4-202ENST00000356162 MRC2Q9UBG0 1479 aa7.1□□□□□ -1.27
CNOT4-202ENST00000356162 SUPT5HO00267 1087 aaKnown RBP7.1□□□□□ -1.27
CNOT4-202ENST00000356162 CSRNP3Q8WYN3 585 aa7.09□□□□□ -1.27
CNOT4-202ENST00000356162 WDR62O43379 1518 aa7.09□□□□□ -1.27
CNOT4-202ENST00000356162 EHMT2Q96KQ7 1210 aa7.06□□□□□ -1.28
CNOT4-202ENST00000356162 URB2Q14146 1524 aaKnown RBP7.04□□□□□ -1.28
CNOT4-202ENST00000356162 DNMBPQ6XZF7 1577 aa7.03□□□□□ -1.28
CNOT4-202ENST00000356162 ABCC8Q09428 1581 aa7.02□□□□□ -1.29
CNOT4-202ENST00000356162 TOPBP1Q92547 1522 aa7.01□□□□□ -1.29
CNOT4-202ENST00000356162 ZBTB12Q9Y330 459 aaPredicted RBP6.99□□□□□ -1.29
CNOT4-202ENST00000356162 CUX1P39880 1505 aa6.97□□□□□ -1.29
CNOT4-202ENST00000356162 BIVM-ERCC5R4GMW8 1640 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms