RNA–Protein interactions for RNA: ENST00000354412.7

LRP8-203, Transcript of LDL receptor related protein 8, humanhuman

TSL 1 (best) BASIC

Gene LRP8, Length 2,553 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRP8-203ENST00000354412 NISCHQ9Y2I1 1504 aa28.14■■■□□ 2.1
LRP8-203ENST00000354412 CCDC180Q9P1Z9 1646 aa24.38■■□□□ 1.49
LRP8-203ENST00000354412 ZCCHC6Q5VYS8 1495 aaKnown RBP23.78■■□□□ 1.4
LRP8-203ENST00000354412 SHROOM4Q9ULL8 1493 aa23.42■■□□□ 1.34
LRP8-203ENST00000354412 DCAF8L2P0C7V8 631 aa23.42■■□□□ 1.34
LRP8-203ENST00000354412 DCAF1Q9Y4B6 1507 aa23.33■■□□□ 1.33
LRP8-203ENST00000354412 SUPT5HO00267 1087 aaKnown RBP23.29■■□□□ 1.32
LRP8-203ENST00000354412 HRCP23327 699 aa23.2■■□□□ 1.3
LRP8-203ENST00000354412 CHIC1Q5VXU3 224 aa22.92■■□□□ 1.26
LRP8-203ENST00000354412 MYO15BQ96JP2 1530 aa22.85■■□□□ 1.25
LRP8-203ENST00000354412 ABCC9O60706 1549 aa22.79■■□□□ 1.24
LRP8-203ENST00000354412 PCGF6Q9BYE7 350 aa22.78■■□□□ 1.24
LRP8-203ENST00000354412 NACADO15069 1562 aa22.52■■□□□ 1.2
LRP8-203ENST00000354412 PPARGC1BQ86YN6 1023 aaKnown RBP22.48■■□□□ 1.19
LRP8-203ENST00000354412 SCRIBQ14160 1630 aa22.42■■□□□ 1.18
LRP8-203ENST00000354412 TRIM26Q12899 539 aaPredicted RBP22.3■■□□□ 1.16
LRP8-203ENST00000354412 LOC105371045A0A1W2PR82 267 aa22.22■■□□□ 1.15
LRP8-203ENST00000354412 RB1CC1Q8TDY2 1594 aa22.19■■□□□ 1.14
LRP8-203ENST00000354412 ZEB1P37275 1124 aaPredicted RBP22.16■■□□□ 1.14
LRP8-203ENST00000354412 PELP1Q8IZL8 1130 aaKnown RBP22.16■■□□□ 1.14
LRP8-203ENST00000354412 RSF1Q96T23 1441 aaPredicted RBP22.01■■□□□ 1.11
LRP8-203ENST00000354412 UNC13AQ9UPW8 1703 aa21.81■■□□□ 1.08
LRP8-203ENST00000354412 CECR2Q9BXF3 1484 aa21.77■■□□□ 1.08
LRP8-203ENST00000354412 MROH2BQ7Z745 1585 aa21.74■■□□□ 1.07
LRP8-203ENST00000354412 BAZ1AQ9NRL2 1556 aaPredicted RBP21.72■■□□□ 1.07
LRP8-203ENST00000354412 PABPN1Q86U42 306 aaKnown RBP eCLIP21.71■■□□□ 1.07
LRP8-203ENST00000354412 TRIM41Q8WV44 630 aa21.71■■□□□ 1.07
LRP8-203ENST00000354412 SCAF1Q9H7N4 1312 aaKnown RBP21.66■■□□□ 1.06
LRP8-203ENST00000354412 WIZO95785 1651 aa21.62■■□□□ 1.05
LRP8-203ENST00000354412 SMARCA4P51532 1647 aa21.55■■□□□ 1.04
LRP8-203ENST00000354412 BICRAQ9NZM4 1560 aa21.49■■□□□ 1.03
LRP8-203ENST00000354412 FAM9AQ8IZU1 332 aaPredicted RBP21.47■■□□□ 1.03
LRP8-203ENST00000354412 TOP2AP11388 1531 aaKnown RBP21.44■■□□□ 1.02
LRP8-203ENST00000354412 ACIN1Q9UKV3 1341 aaKnown RBP21.35■■□□□ 1.01
LRP8-203ENST00000354412 EIF4G1Q04637 1599 aaKnown RBP21.35■■□□□ 1.01
LRP8-203ENST00000354412 MYT1Q01538 1121 aa21.3■■□□□ 1
LRP8-203ENST00000354412 PEG3Q9GZU2 1588 aa21.29■■□□□ 1
LRP8-203ENST00000354412 CCER1Q8TC90 406 aaPredicted RBP21.26■□□□□ 0.99
LRP8-203ENST00000354412 SMARCA2P51531 1590 aa21.25■□□□□ 0.99
LRP8-203ENST00000354412 CENPBP07199 599 aaPredicted RBP21.25■□□□□ 0.99
LRP8-203ENST00000354412 EHMT2Q96KQ7 1210 aa21.22■□□□□ 0.99
LRP8-203ENST00000354412 NEUROD1Q13562 356 aa21.2■□□□□ 0.98
LRP8-203ENST00000354412 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.19■□□□□ 0.98
LRP8-203ENST00000354412 CCDC88BA6NC98 1476 aa21.17■□□□□ 0.98
LRP8-203ENST00000354412 DIEXFQ68CQ4 756 aaKnown RBP21.15■□□□□ 0.98
LRP8-203ENST00000354412 GTF3C3Q9Y5Q9 886 aa21.09■□□□□ 0.97
LRP8-203ENST00000354412 ATAD2BQ9ULI0 1458 aa21.01■□□□□ 0.95
LRP8-203ENST00000354412 WRNQ14191 1432 aaPredicted RBP eCLIP20.98■□□□□ 0.95
LRP8-203ENST00000354412 BAZ1BQ9UIG0 1483 aaKnown RBP20.94■□□□□ 0.94
LRP8-203ENST00000354412 ABCC8Q09428 1581 aa20.92■□□□□ 0.94
LRP8-203ENST00000354412 ZNF316A6NFI3 1004 aaPredicted RBP20.87■□□□□ 0.93
LRP8-203ENST00000354412 HMGXB3Q12766 1538 aa20.82■□□□□ 0.92
LRP8-203ENST00000354412 CEP162Q5TB80 1403 aa20.8■□□□□ 0.92
LRP8-203ENST00000354412 TNIKQ9UKE5 1360 aa20.79■□□□□ 0.92
LRP8-203ENST00000354412 EEA1Q15075 1411 aa20.78■□□□□ 0.92
LRP8-203ENST00000354412 NCAPD3P42695 1498 aa20.74■□□□□ 0.91
LRP8-203ENST00000354412 TTBK1Q5TCY1 1321 aaPredicted RBP20.7■□□□□ 0.9
LRP8-203ENST00000354412 SYNJ1O43426 1573 aa20.64■□□□□ 0.9
LRP8-203ENST00000354412 CSRNP3Q8WYN3 585 aa20.64■□□□□ 0.89
LRP8-203ENST00000354412 UBTFP17480 764 aaKnown RBP20.61■□□□□ 0.89
LRP8-203ENST00000354412 YTHDC1Q96MU7 727 aaKnown RBP20.61■□□□□ 0.89
LRP8-203ENST00000354412 SOGA1O94964 1423 aa20.61■□□□□ 0.89
LRP8-203ENST00000354412 MIER1Q8N108 512 aa20.56■□□□□ 0.88
LRP8-203ENST00000354412 TOP2BQ02880 1626 aa20.54■□□□□ 0.88
LRP8-203ENST00000354412 BIVM-ERCC5R4GMW8 1640 aa20.54■□□□□ 0.88
LRP8-203ENST00000354412 GOLGA3Q08378 1498 aa20.54■□□□□ 0.88
LRP8-203ENST00000354412 PRDM2Q13029 1718 aa20.51■□□□□ 0.87
LRP8-203ENST00000354412 KIF21BO75037 1637 aa20.5■□□□□ 0.87
LRP8-203ENST00000354412 RUSC2Q8N2Y8 1516 aa20.48■□□□□ 0.87
LRP8-203ENST00000354412 CLSPNQ9HAW4 1339 aa20.47■□□□□ 0.87
LRP8-203ENST00000354412 CC2D2AQ9P2K1 1620 aa20.46■□□□□ 0.87
LRP8-203ENST00000354412 CFTRP13569 1480 aa20.44■□□□□ 0.86
LRP8-203ENST00000354412 CEP164Q9UPV0 1460 aa20.44■□□□□ 0.86
LRP8-203ENST00000354412 HNRNPUL2Q1KMD3 747 aaKnown RBP20.43■□□□□ 0.86
LRP8-203ENST00000354412 APLP2Q06481 763 aa20.37■□□□□ 0.85
LRP8-203ENST00000354412 CLIP1P30622 1438 aa20.33■□□□□ 0.84
LRP8-203ENST00000354412 VPS8Q8N3P4 1428 aa20.31■□□□□ 0.84
LRP8-203ENST00000354412 CUX1P39880 1505 aa20.31■□□□□ 0.84
LRP8-203ENST00000354412 DNAJC5BQ9UF47 199 aa20.3■□□□□ 0.84
LRP8-203ENST00000354412 ERICH3Q5RHP9 1530 aa20.25■□□□□ 0.83
LRP8-203ENST00000354412 CADPSQ9ULU8 1353 aa20.22■□□□□ 0.83
LRP8-203ENST00000354412 RAPGEF2Q9Y4G8 1499 aa20.18■□□□□ 0.82
LRP8-203ENST00000354412 SUPT16HQ9Y5B9 1047 aaKnown RBP20.18■□□□□ 0.82
LRP8-203ENST00000354412 PRXQ9BXM0 1461 aa20.16■□□□□ 0.82
LRP8-203ENST00000354412 KIF27Q86VH2 1401 aa20.15■□□□□ 0.82
LRP8-203ENST00000354412 NESP48681 1621 aa20.12■□□□□ 0.81
LRP8-203ENST00000354412 DHX57Q6P158 1386 aaKnown RBP20.11■□□□□ 0.81
LRP8-203ENST00000354412 RANGAP1P46060 587 aaPredicted RBP20.11■□□□□ 0.81
LRP8-203ENST00000354412 FANCD2Q9BXW9 1451 aa20.02■□□□□ 0.8
LRP8-203ENST00000354412 DNMBPQ6XZF7 1577 aa20■□□□□ 0.79
LRP8-203ENST00000354412 FGD5Q6ZNL6 1462 aa20■□□□□ 0.79
LRP8-203ENST00000354412 LAMC3Q9Y6N6 1575 aa19.99■□□□□ 0.79
LRP8-203ENST00000354412 TSHZ2Q9NRE2 1034 aa19.99■□□□□ 0.79
LRP8-203ENST00000354412 ANP32EQ9BTT0 268 aa19.96■□□□□ 0.79
LRP8-203ENST00000354412 CUX2O14529 1486 aa19.96■□□□□ 0.79
LRP8-203ENST00000354412 RRBP1Q9P2E9 1410 aaKnown RBP19.92■□□□□ 0.78
LRP8-203ENST00000354412 ARAP1Q96P48 1450 aa19.9■□□□□ 0.78
LRP8-203ENST00000354412 TOPBP1Q92547 1522 aa19.88■□□□□ 0.77
LRP8-203ENST00000354412 IGF1RP08069 1367 aa19.87■□□□□ 0.77
LRP8-203ENST00000354412 KANK4Q5T7N3 995 aaPredicted RBP19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms