RNA–Protein interactions for RNA: ENST00000349893.8

COPE-202, Transcript of coatomer protein complex subunit epsilon, humanhuman

TSL 2 BASIC

Gene COPE, Length 948 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPE-202ENST00000349893 NISCHQ9Y2I1 1504 aa40.45■■■■■ 4.07
COPE-202ENST00000349893 ABCC9O60706 1549 aa36.94■■■■□ 3.5
COPE-202ENST00000349893 CCDC180Q9P1Z9 1646 aa36.57■■■■□ 3.44
COPE-202ENST00000349893 DNAJC5BQ9UF47 199 aa35.16■■■■□ 3.22
COPE-202ENST00000349893 RB1CC1Q8TDY2 1594 aa35.02■■■■□ 3.2
COPE-202ENST00000349893 NACADO15069 1562 aa34.69■■■■□ 3.14
COPE-202ENST00000349893 PABPN1Q86U42 306 aaKnown RBP eCLIP34.26■■■■□ 3.081e-10■■■■□ 21.1
COPE-202ENST00000349893 UNC13AQ9UPW8 1703 aa34.23■■■■□ 3.07
COPE-202ENST00000349893 MYO15BQ96JP2 1530 aa34.13■■■■□ 3.05
COPE-202ENST00000349893 DCAF8L2P0C7V8 631 aa34.12■■■■□ 3.05
COPE-202ENST00000349893 BICRAQ9NZM4 1560 aa34.06■■■■□ 3.04
COPE-202ENST00000349893 SHROOM4Q9ULL8 1493 aa33.63■■■□□ 2.97
COPE-202ENST00000349893 DCAF1Q9Y4B6 1507 aa33.47■■■□□ 2.95
COPE-202ENST00000349893 ZCCHC6Q5VYS8 1495 aaKnown RBP33.44■■■□□ 2.94
COPE-202ENST00000349893 CC2D2AQ9P2K1 1620 aa33.4■■■□□ 2.94
COPE-202ENST00000349893 CECR2Q9BXF3 1484 aa33.37■■■□□ 2.93
COPE-202ENST00000349893 EIF4G1Q04637 1599 aaKnown RBP33.23■■■□□ 2.91
COPE-202ENST00000349893 SCRIBQ14160 1630 aa33.17■■■□□ 2.9
COPE-202ENST00000349893 DNAJC5Q9H3Z4 198 aa32.69■■■□□ 2.82
COPE-202ENST00000349893 CUX2O14529 1486 aa32.16■■■□□ 2.74
COPE-202ENST00000349893 NCAPD3P42695 1498 aa32.04■■■□□ 2.72
COPE-202ENST00000349893 ERCC6Q03468 1493 aa31.92■■■□□ 2.7
COPE-202ENST00000349893 ATAD2BQ9ULI0 1458 aa31.83■■■□□ 2.69
COPE-202ENST00000349893 HMGXB3Q12766 1538 aa31.76■■■□□ 2.68
COPE-202ENST00000349893 SMARCA2P51531 1590 aa31.72■■■□□ 2.67
COPE-202ENST00000349893 SMARCA4P51532 1647 aa31.66■■■□□ 2.66
COPE-202ENST00000349893 NESP48681 1621 aa31.6■■■□□ 2.65
COPE-202ENST00000349893 THOC2Q8NI27 1593 aaKnown RBP31.47■■■□□ 2.63
COPE-202ENST00000349893 BAZ1BQ9UIG0 1483 aaKnown RBP31.46■■■□□ 2.63
COPE-202ENST00000349893 PEG3Q9GZU2 1588 aa31.44■■■□□ 2.62
COPE-202ENST00000349893 BAZ1AQ9NRL2 1556 aaPredicted RBP31.43■■■□□ 2.62
COPE-202ENST00000349893 LAMC3Q9Y6N6 1575 aa31.38■■■□□ 2.61
COPE-202ENST00000349893 KIF21AQ7Z4S6 1674 aa31.2■■■□□ 2.59
COPE-202ENST00000349893 PDS5BQ9NTI5 1447 aa31.17■■■□□ 2.58
COPE-202ENST00000349893 MROH2BQ7Z745 1585 aa31.13■■■□□ 2.57
COPE-202ENST00000349893 CADPSQ9ULU8 1353 aa30.99■■■□□ 2.55
COPE-202ENST00000349893 MRC2Q9UBG0 1479 aa30.95■■■□□ 2.54
COPE-202ENST00000349893 WDR62O43379 1518 aa30.93■■■□□ 2.54
COPE-202ENST00000349893 TRIM41Q8WV44 630 aa30.88■■■□□ 2.53
COPE-202ENST00000349893 WIZO95785 1651 aa30.71■■■□□ 2.51
COPE-202ENST00000349893 CEP164Q9UPV0 1460 aa30.7■■■□□ 2.5
COPE-202ENST00000349893 FANCD2Q9BXW9 1451 aa30.63■■■□□ 2.49
COPE-202ENST00000349893 CFTRP13569 1480 aa30.57■■■□□ 2.48
COPE-202ENST00000349893 OSCARQ8IYS5 282 aa30.51■■■□□ 2.47
COPE-202ENST00000349893 URB2Q14146 1524 aaKnown RBP30.42■■■□□ 2.46
COPE-202ENST00000349893 TOP2AP11388 1531 aaKnown RBP30.33■■■□□ 2.45
COPE-202ENST00000349893 RSF1Q96T23 1441 aaPredicted RBP30.3■■■□□ 2.44
COPE-202ENST00000349893 RIMBP3CA6NJZ7 1639 aa30.22■■■□□ 2.43
COPE-202ENST00000349893 RIMBP3BA6NNM3 1639 aa30.22■■■□□ 2.43
COPE-202ENST00000349893 RIMBP3Q9UFD9 1639 aa30.22■■■□□ 2.43
COPE-202ENST00000349893 PRDM2Q13029 1718 aa30.2■■■□□ 2.43
COPE-202ENST00000349893 IFT140Q96RY7 1462 aa30.13■■■□□ 2.41
COPE-202ENST00000349893 ZNF608Q9ULD9 1512 aaPredicted RBP30.11■■■□□ 2.41
COPE-202ENST00000349893 ARHGEF11O15085 1522 aa30.07■■■□□ 2.4
COPE-202ENST00000349893 TOPBP1Q92547 1522 aa30■■■□□ 2.39
COPE-202ENST00000349893 CCDC88BA6NC98 1476 aa29.97■■■□□ 2.39
COPE-202ENST00000349893 EIF4G3O43432 1585 aaKnown RBP29.93■■■□□ 2.38
COPE-202ENST00000349893 ABCC8Q09428 1581 aa29.93■■■□□ 2.38
COPE-202ENST00000349893 DNMBPQ6XZF7 1577 aa29.86■■■□□ 2.37
COPE-202ENST00000349893 TARBP1Q13395 1621 aaKnown RBP29.81■■■□□ 2.36
COPE-202ENST00000349893 CYB5RLQ6IPT4 315 aa29.78■■■□□ 2.36
COPE-202ENST00000349893 CHD1O14646 1710 aa29.78■■■□□ 2.36
COPE-202ENST00000349893 AQRO60306 1485 aaKnown RBP eCLIP29.74■■■□□ 2.353e-7■■■■□ 21.7
COPE-202ENST00000349893 ARAP1Q96P48 1450 aa29.74■■■□□ 2.35
COPE-202ENST00000349893 POLA1P09884 1462 aaPredicted RBP29.66■■■□□ 2.34
COPE-202ENST00000349893 TRHP20396 242 aaPredicted RBP29.56■■■□□ 2.32
COPE-202ENST00000349893 FBLN2P98095 1184 aa29.53■■■□□ 2.32
COPE-202ENST00000349893 WDR97A6NE52 1622 aa29.52■■■□□ 2.32
COPE-202ENST00000349893 RAD54L2Q9Y4B4 1467 aa29.51■■■□□ 2.31
COPE-202ENST00000349893 CLASP1Q7Z460 1538 aa29.5■■■□□ 2.31
COPE-202ENST00000349893 SOGA1O94964 1423 aa29.47■■■□□ 2.31
COPE-202ENST00000349893 TDRD9Q8NDG6 1382 aaKnown RBP29.46■■■□□ 2.31
COPE-202ENST00000349893 SNAPC4Q5SXM2 1469 aa29.43■■■□□ 2.3
COPE-202ENST00000349893 MAGI1Q96QZ7 1491 aaPredicted RBP29.4■■■□□ 2.3
COPE-202ENST00000349893 SYNJ1O43426 1573 aa29.39■■■□□ 2.29
COPE-202ENST00000349893 FGD5Q6ZNL6 1462 aa29.37■■■□□ 2.29
COPE-202ENST00000349893 GRIN2BQ13224 1484 aa29.31■■■□□ 2.28
COPE-202ENST00000349893 CHMP7Q8WUX9 453 aaPredicted RBP29.3■■■□□ 2.28
COPE-202ENST00000349893 CUX1P39880 1505 aa29.29■■■□□ 2.28
COPE-202ENST00000349893 SYNJ2O15056 1496 aa29.29■■■□□ 2.28
COPE-202ENST00000349893 GAPVD1Q14C86 1478 aa29.16■■■□□ 2.26
COPE-202ENST00000349893 PBRM1Q86U86 1689 aa29.15■■■□□ 2.26
COPE-202ENST00000349893 AEBP2Q6ZN18 517 aaPredicted RBP29.08■■■□□ 2.25
COPE-202ENST00000349893 ABCA5Q8WWZ7 1642 aa29.07■■■□□ 2.24
COPE-202ENST00000349893 ABCA10Q8WWZ4 1543 aa29.06■■■□□ 2.24
COPE-202ENST00000349893 ERCC6L2Q5T890 1561 aa28.94■■■□□ 2.22
COPE-202ENST00000349893 GRIN2AQ12879 1464 aa28.94■■■□□ 2.22
COPE-202ENST00000349893 NUP160Q12769 1436 aa28.91■■■□□ 2.22
COPE-202ENST00000349893 ADAMTS12P58397 1594 aa28.88■■■□□ 2.21
COPE-202ENST00000349893 CEP170Q5SW79 1584 aa28.88■■■□□ 2.21
COPE-202ENST00000349893 SHROOM2Q13796 1616 aa28.85■■■□□ 2.21
COPE-202ENST00000349893 WRNQ14191 1432 aaPredicted RBP eCLIP28.79■■■□□ 2.2
COPE-202ENST00000349893 FHAD1B1AJZ9 1412 aa28.76■■■□□ 2.19
COPE-202ENST00000349893 BIVM-ERCC5R4GMW8 1640 aa28.71■■■□□ 2.19
COPE-202ENST00000349893 KIF13AQ9H1H9 1805 aa28.71■■■□□ 2.19
COPE-202ENST00000349893 ERICH3Q5RHP9 1530 aa28.69■■■□□ 2.18
COPE-202ENST00000349893 TOP2BQ02880 1626 aa28.69■■■□□ 2.18
COPE-202ENST00000349893 PRG4Q92954 1404 aaPredicted RBP28.59■■■□□ 2.17
COPE-202ENST00000349893 JPH4Q96JJ6 628 aa28.51■■■□□ 2.15
COPE-202ENST00000349893 ABCC10Q5T3U5 1492 aa28.51■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms