RNA–Protein interactions for RNA: ENST00000346213.8

RAB5C-201, Transcript of RAB5C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RAB5C, Length 1,671 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB5C-201ENST00000346213 NISCHQ9Y2I1 1504 aa39.76■■■■□ 3.95
RAB5C-201ENST00000346213 CCDC180Q9P1Z9 1646 aa35.33■■■■□ 3.25
RAB5C-201ENST00000346213 ABCC9O60706 1549 aa34.91■■■■□ 3.18
RAB5C-201ENST00000346213 RB1CC1Q8TDY2 1594 aa33.33■■■□□ 2.93
RAB5C-201ENST00000346213 NACADO15069 1562 aa33.24■■■□□ 2.91
RAB5C-201ENST00000346213 DCAF8L2P0C7V8 631 aa33.18■■■□□ 2.9
RAB5C-201ENST00000346213 ZCCHC6Q5VYS8 1495 aaKnown RBP33.12■■■□□ 2.89
RAB5C-201ENST00000346213 MYO15BQ96JP2 1530 aa32.99■■■□□ 2.87
RAB5C-201ENST00000346213 DCAF1Q9Y4B6 1507 aa32.8■■■□□ 2.84
RAB5C-201ENST00000346213 UNC13AQ9UPW8 1703 aa32.73■■■□□ 2.83
RAB5C-201ENST00000346213 PABPN1Q86U42 306 aaKnown RBP eCLIP32.61■■■□□ 2.81
RAB5C-201ENST00000346213 BICRAQ9NZM4 1560 aa32.57■■■□□ 2.8
RAB5C-201ENST00000346213 DNAJC5BQ9UF47 199 aa32.38■■■□□ 2.77
RAB5C-201ENST00000346213 SCRIBQ14160 1630 aa32.36■■■□□ 2.77
RAB5C-201ENST00000346213 SHROOM4Q9ULL8 1493 aa31.92■■■□□ 2.7
RAB5C-201ENST00000346213 EIF4G1Q04637 1599 aaKnown RBP31.62■■■□□ 2.65
RAB5C-201ENST00000346213 CC2D2AQ9P2K1 1620 aa31.54■■■□□ 2.64
RAB5C-201ENST00000346213 CECR2Q9BXF3 1484 aa31.33■■■□□ 2.61
RAB5C-201ENST00000346213 SMARCA4P51532 1647 aa30.9■■■□□ 2.54
RAB5C-201ENST00000346213 ATAD2BQ9ULI0 1458 aa30.79■■■□□ 2.52
RAB5C-201ENST00000346213 NCAPD3P42695 1498 aa30.75■■■□□ 2.51
RAB5C-201ENST00000346213 BAZ1AQ9NRL2 1556 aaPredicted RBP30.74■■■□□ 2.51
RAB5C-201ENST00000346213 MROH2BQ7Z745 1585 aa30.73■■■□□ 2.51
RAB5C-201ENST00000346213 SMARCA2P51531 1590 aa30.61■■■□□ 2.49
RAB5C-201ENST00000346213 PEG3Q9GZU2 1588 aa30.58■■■□□ 2.49
RAB5C-201ENST00000346213 HMGXB3Q12766 1538 aa30.57■■■□□ 2.48
RAB5C-201ENST00000346213 BAZ1BQ9UIG0 1483 aaKnown RBP30.45■■■□□ 2.47
RAB5C-201ENST00000346213 WIZO95785 1651 aa30.36■■■□□ 2.45
RAB5C-201ENST00000346213 RSF1Q96T23 1441 aaPredicted RBP30.26■■■□□ 2.43
RAB5C-201ENST00000346213 NESP48681 1621 aa30.24■■■□□ 2.43
RAB5C-201ENST00000346213 ERCC6Q03468 1493 aa29.95■■■□□ 2.39
RAB5C-201ENST00000346213 TOP2AP11388 1531 aaKnown RBP29.95■■■□□ 2.38
RAB5C-201ENST00000346213 LAMC3Q9Y6N6 1575 aa29.91■■■□□ 2.38
RAB5C-201ENST00000346213 CADPSQ9ULU8 1353 aa29.83■■■□□ 2.37
RAB5C-201ENST00000346213 KIF21AQ7Z4S6 1674 aa29.78■■■□□ 2.36
RAB5C-201ENST00000346213 THOC2Q8NI27 1593 aaKnown RBP29.76■■■□□ 2.36
RAB5C-201ENST00000346213 CUX2O14529 1486 aa29.72■■■□□ 2.35
RAB5C-201ENST00000346213 PDS5BQ9NTI5 1447 aa29.67■■■□□ 2.34
RAB5C-201ENST00000346213 CFTRP13569 1480 aa29.65■■■□□ 2.34
RAB5C-201ENST00000346213 CCDC88BA6NC98 1476 aa29.64■■■□□ 2.34
RAB5C-201ENST00000346213 FANCD2Q9BXW9 1451 aa29.52■■■□□ 2.32
RAB5C-201ENST00000346213 MRC2Q9UBG0 1479 aa29.48■■■□□ 2.31
RAB5C-201ENST00000346213 CEP164Q9UPV0 1460 aa29.45■■■□□ 2.31
RAB5C-201ENST00000346213 WDR62O43379 1518 aa29.43■■■□□ 2.3
RAB5C-201ENST00000346213 URB2Q14146 1524 aaKnown RBP29.33■■■□□ 2.29
RAB5C-201ENST00000346213 PRDM2Q13029 1718 aa29.31■■■□□ 2.28
RAB5C-201ENST00000346213 SUPT5HO00267 1087 aaKnown RBP29.26■■■□□ 2.27
RAB5C-201ENST00000346213 DNAJC5Q9H3Z4 198 aa29.09■■■□□ 2.25
RAB5C-201ENST00000346213 TOPBP1Q92547 1522 aa29.05■■■□□ 2.24
RAB5C-201ENST00000346213 DNMBPQ6XZF7 1577 aa28.95■■■□□ 2.22
RAB5C-201ENST00000346213 ZNF608Q9ULD9 1512 aaPredicted RBP28.9■■■□□ 2.22
RAB5C-201ENST00000346213 IFT140Q96RY7 1462 aa28.83■■■□□ 2.21
RAB5C-201ENST00000346213 CUX1P39880 1505 aa28.82■■■□□ 2.2
RAB5C-201ENST00000346213 ABCC8Q09428 1581 aa28.81■■■□□ 2.2
RAB5C-201ENST00000346213 POLA1P09884 1462 aaPredicted RBP28.81■■■□□ 2.2
RAB5C-201ENST00000346213 TARBP1Q13395 1621 aaKnown RBP28.79■■■□□ 2.2
RAB5C-201ENST00000346213 RAD54L2Q9Y4B4 1467 aa28.74■■■□□ 2.19
RAB5C-201ENST00000346213 EIF4G3O43432 1585 aaKnown RBP28.7■■■□□ 2.19
RAB5C-201ENST00000346213 FGD5Q6ZNL6 1462 aa28.7■■■□□ 2.19
RAB5C-201ENST00000346213 AQRO60306 1485 aaKnown RBP eCLIP28.66■■■□□ 2.184e-6■■■■■ 31
RAB5C-201ENST00000346213 SOGA1O94964 1423 aa28.6■■■□□ 2.17
RAB5C-201ENST00000346213 TDRD9Q8NDG6 1382 aaKnown RBP28.54■■■□□ 2.16
RAB5C-201ENST00000346213 SYNJ1O43426 1573 aa28.52■■■□□ 2.16
RAB5C-201ENST00000346213 WDR97A6NE52 1622 aa28.51■■■□□ 2.15
RAB5C-201ENST00000346213 WRNQ14191 1432 aaPredicted RBP eCLIP28.44■■■□□ 2.14
RAB5C-201ENST00000346213 BIVM-ERCC5R4GMW8 1640 aa28.43■■■□□ 2.14
RAB5C-201ENST00000346213 TOP2BQ02880 1626 aa28.43■■■□□ 2.14
RAB5C-201ENST00000346213 OSCARQ8IYS5 282 aa28.4■■■□□ 2.14
RAB5C-201ENST00000346213 ABCA10Q8WWZ4 1543 aa28.37■■■□□ 2.13
RAB5C-201ENST00000346213 SNAPC4Q5SXM2 1469 aa28.36■■■□□ 2.13
RAB5C-201ENST00000346213 CHD1O14646 1710 aa28.35■■■□□ 2.13
RAB5C-201ENST00000346213 ABCA5Q8WWZ7 1642 aa28.33■■■□□ 2.13
RAB5C-201ENST00000346213 GRIN2BQ13224 1484 aa28.28■■■□□ 2.12
RAB5C-201ENST00000346213 GAPVD1Q14C86 1478 aa28.27■■■□□ 2.12
RAB5C-201ENST00000346213 PBRM1Q86U86 1689 aa28.25■■■□□ 2.11
RAB5C-201ENST00000346213 MAGI1Q96QZ7 1491 aaPredicted RBP28.21■■■□□ 2.11
RAB5C-201ENST00000346213 FBLN2P98095 1184 aa28.19■■■□□ 2.1
RAB5C-201ENST00000346213 RIMBP3CA6NJZ7 1639 aa28.14■■■□□ 2.09
RAB5C-201ENST00000346213 RIMBP3BA6NNM3 1639 aa28.14■■■□□ 2.09
RAB5C-201ENST00000346213 RIMBP3Q9UFD9 1639 aa28.14■■■□□ 2.09
RAB5C-201ENST00000346213 SYNJ2O15056 1496 aa28.14■■■□□ 2.09
RAB5C-201ENST00000346213 ARHGEF11O15085 1522 aa28.1■■■□□ 2.09
RAB5C-201ENST00000346213 CLASP1Q7Z460 1538 aa28.09■■■□□ 2.09
RAB5C-201ENST00000346213 ADAMTS12P58397 1594 aa28.07■■■□□ 2.08
RAB5C-201ENST00000346213 TRIM41Q8WV44 630 aa28.06■■■□□ 2.08
RAB5C-201ENST00000346213 CHMP7Q8WUX9 453 aaPredicted RBP28.05■■■□□ 2.08
RAB5C-201ENST00000346213 ERICH3Q5RHP9 1530 aa27.98■■■□□ 2.07
RAB5C-201ENST00000346213 GRIN2AQ12879 1464 aa27.97■■■□□ 2.07
RAB5C-201ENST00000346213 ARAP1Q96P48 1450 aa27.92■■■□□ 2.06
RAB5C-201ENST00000346213 CEP170Q5SW79 1584 aa27.92■■■□□ 2.06
RAB5C-201ENST00000346213 FHAD1B1AJZ9 1412 aa27.92■■■□□ 2.06
RAB5C-201ENST00000346213 NUP160Q12769 1436 aa27.88■■■□□ 2.05
RAB5C-201ENST00000346213 IGF1RP08069 1367 aa27.82■■■□□ 2.04
RAB5C-201ENST00000346213 ERCC6L2Q5T890 1561 aa27.81■■■□□ 2.04
RAB5C-201ENST00000346213 KIF27Q86VH2 1401 aa27.79■■■□□ 2.04
RAB5C-201ENST00000346213 CYB5RLQ6IPT4 315 aa27.78■■■□□ 2.04
RAB5C-201ENST00000346213 RUSC2Q8N2Y8 1516 aa27.75■■■□□ 2.03
RAB5C-201ENST00000346213 SHROOM2Q13796 1616 aa27.69■■■□□ 2.02
RAB5C-201ENST00000346213 CUL7Q14999 1698 aa27.65■■■□□ 2.02
RAB5C-201ENST00000346213 CARMIL1Q5VZK9 1371 aa27.58■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms