RNA–Protein interactions for RNA: ENST00000340611.8

BRAT1-201, Transcript of BRCA1 associated ATM activator 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene BRAT1, Length 2,915 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRAT1-201ENST00000340611 NISCHQ9Y2I1 1504 aa33.39■■■□□ 2.94
BRAT1-201ENST00000340611 CCDC180Q9P1Z9 1646 aa28.94■■■□□ 2.22
BRAT1-201ENST00000340611 DCAF8L2P0C7V8 631 aa28.12■■■□□ 2.09
BRAT1-201ENST00000340611 ZCCHC6Q5VYS8 1495 aaKnown RBP27.99■■■□□ 2.07
BRAT1-201ENST00000340611 ABCC9O60706 1549 aa27.91■■■□□ 2.06
BRAT1-201ENST00000340611 SHROOM4Q9ULL8 1493 aa27.68■■■□□ 2.02
BRAT1-201ENST00000340611 DCAF1Q9Y4B6 1507 aa27.34■■□□□ 1.97
BRAT1-201ENST00000340611 NACADO15069 1562 aa27.02■■□□□ 1.92
BRAT1-201ENST00000340611 SCRIBQ14160 1630 aa26.99■■□□□ 1.91
BRAT1-201ENST00000340611 MYO15BQ96JP2 1530 aa26.98■■□□□ 1.91
BRAT1-201ENST00000340611 RB1CC1Q8TDY2 1594 aa26.88■■□□□ 1.89
BRAT1-201ENST00000340611 SUPT5HO00267 1087 aaKnown RBP26.55■■□□□ 1.84
BRAT1-201ENST00000340611 UNC13AQ9UPW8 1703 aa26.51■■□□□ 1.83
BRAT1-201ENST00000340611 PABPN1Q86U42 306 aaKnown RBP eCLIP26.44■■□□□ 1.82
BRAT1-201ENST00000340611 BICRAQ9NZM4 1560 aa26.2■■□□□ 1.78
BRAT1-201ENST00000340611 CECR2Q9BXF3 1484 aa26.17■■□□□ 1.78
BRAT1-201ENST00000340611 RSF1Q96T23 1441 aaPredicted RBP25.96■■□□□ 1.75
BRAT1-201ENST00000340611 MROH2BQ7Z745 1585 aa25.93■■□□□ 1.74
BRAT1-201ENST00000340611 WIZO95785 1651 aa25.75■■□□□ 1.71
BRAT1-201ENST00000340611 BAZ1AQ9NRL2 1556 aaPredicted RBP25.72■■□□□ 1.71
BRAT1-201ENST00000340611 SMARCA4P51532 1647 aa25.69■■□□□ 1.7
BRAT1-201ENST00000340611 EIF4G1Q04637 1599 aaKnown RBP25.41■■□□□ 1.66
BRAT1-201ENST00000340611 ATAD2BQ9ULI0 1458 aa25.31■■□□□ 1.64
BRAT1-201ENST00000340611 TOP2AP11388 1531 aaKnown RBP25.27■■□□□ 1.64
BRAT1-201ENST00000340611 PEG3Q9GZU2 1588 aa25.21■■□□□ 1.63
BRAT1-201ENST00000340611 BAZ1BQ9UIG0 1483 aaKnown RBP25.18■■□□□ 1.62
BRAT1-201ENST00000340611 CHIC1Q5VXU3 224 aa25.18■■□□□ 1.62
BRAT1-201ENST00000340611 SMARCA2P51531 1590 aa25.17■■□□□ 1.62
BRAT1-201ENST00000340611 CCDC88BA6NC98 1476 aa25.16■■□□□ 1.62
BRAT1-201ENST00000340611 CC2D2AQ9P2K1 1620 aa25.1■■□□□ 1.61
BRAT1-201ENST00000340611 NCAPD3P42695 1498 aa25■■□□□ 1.59
BRAT1-201ENST00000340611 HMGXB3Q12766 1538 aa24.9■■□□□ 1.58
BRAT1-201ENST00000340611 DNAJC5BQ9UF47 199 aa24.9■■□□□ 1.58
BRAT1-201ENST00000340611 PELP1Q8IZL8 1130 aaKnown RBP24.79■■□□□ 1.56
BRAT1-201ENST00000340611 TRIM41Q8WV44 630 aa24.78■■□□□ 1.56
BRAT1-201ENST00000340611 ABCC8Q09428 1581 aa24.75■■□□□ 1.55
BRAT1-201ENST00000340611 HRCP23327 699 aa24.68■■□□□ 1.54
BRAT1-201ENST00000340611 FAM9AQ8IZU1 332 aaPredicted RBP24.61■■□□□ 1.53
BRAT1-201ENST00000340611 PPARGC1BQ86YN6 1023 aaKnown RBP24.51■■□□□ 1.51
BRAT1-201ENST00000340611 NESP48681 1621 aa24.5■■□□□ 1.51
BRAT1-201ENST00000340611 EHMT2Q96KQ7 1210 aa24.49■■□□□ 1.51
BRAT1-201ENST00000340611 CFTRP13569 1480 aa24.48■■□□□ 1.51
BRAT1-201ENST00000340611 CADPSQ9ULU8 1353 aa24.45■■□□□ 1.5
BRAT1-201ENST00000340611 LOC105371045A0A1W2PR82 267 aa24.45■■□□□ 1.5
BRAT1-201ENST00000340611 WRNQ14191 1432 aaPredicted RBP eCLIP24.42■■□□□ 1.5
BRAT1-201ENST00000340611 SYNJ1O43426 1573 aa24.38■■□□□ 1.49
BRAT1-201ENST00000340611 SOGA1O94964 1423 aa24.25■■□□□ 1.47
BRAT1-201ENST00000340611 PRDM2Q13029 1718 aa24.24■■□□□ 1.47
BRAT1-201ENST00000340611 RUSC2Q8N2Y8 1516 aa24.23■■□□□ 1.47
BRAT1-201ENST00000340611 FANCD2Q9BXW9 1451 aa24.23■■□□□ 1.47
BRAT1-201ENST00000340611 PCGF6Q9BYE7 350 aa24.23■■□□□ 1.47
BRAT1-201ENST00000340611 CUX1P39880 1505 aa24.21■■□□□ 1.47
BRAT1-201ENST00000340611 LAMC3Q9Y6N6 1575 aa24.15■■□□□ 1.46
BRAT1-201ENST00000340611 TOP2BQ02880 1626 aa24.14■■□□□ 1.46
BRAT1-201ENST00000340611 BIVM-ERCC5R4GMW8 1640 aa24.08■■□□□ 1.45
BRAT1-201ENST00000340611 KIF21AQ7Z4S6 1674 aa24.08■■□□□ 1.44
BRAT1-201ENST00000340611 CEP164Q9UPV0 1460 aa24.04■■□□□ 1.44
BRAT1-201ENST00000340611 PDS5BQ9NTI5 1447 aa24.02■■□□□ 1.44
BRAT1-201ENST00000340611 FGD5Q6ZNL6 1462 aa23.97■■□□□ 1.43
BRAT1-201ENST00000340611 MYT1Q01538 1121 aa23.97■■□□□ 1.43
BRAT1-201ENST00000340611 URB2Q14146 1524 aaKnown RBP23.96■■□□□ 1.43
BRAT1-201ENST00000340611 CSRNP3Q8WYN3 585 aa23.96■■□□□ 1.43
BRAT1-201ENST00000340611 TOPBP1Q92547 1522 aa23.94■■□□□ 1.42
BRAT1-201ENST00000340611 SCAF1Q9H7N4 1312 aaKnown RBP23.94■■□□□ 1.42
BRAT1-201ENST00000340611 RAD54L2Q9Y4B4 1467 aa23.91■■□□□ 1.42
BRAT1-201ENST00000340611 DNMBPQ6XZF7 1577 aa23.89■■□□□ 1.42
BRAT1-201ENST00000340611 POLA1P09884 1462 aaPredicted RBP23.85■■□□□ 1.41
BRAT1-201ENST00000340611 ERCC6Q03468 1493 aa23.84■■□□□ 1.41
BRAT1-201ENST00000340611 CUX2O14529 1486 aa23.83■■□□□ 1.41
BRAT1-201ENST00000340611 UBTFP17480 764 aaKnown RBP23.8■■□□□ 1.4
BRAT1-201ENST00000340611 EEA1Q15075 1411 aa23.8■■□□□ 1.4
BRAT1-201ENST00000340611 KIF27Q86VH2 1401 aa23.76■■□□□ 1.39
BRAT1-201ENST00000340611 RANGAP1P46060 587 aaPredicted RBP23.75■■□□□ 1.39
BRAT1-201ENST00000340611 MRC2Q9UBG0 1479 aa23.73■■□□□ 1.39
BRAT1-201ENST00000340611 TDRD9Q8NDG6 1382 aaKnown RBP23.71■■□□□ 1.39
BRAT1-201ENST00000340611 RAPGEF2Q9Y4G8 1499 aa23.71■■□□□ 1.39
BRAT1-201ENST00000340611 GOLGA3Q08378 1498 aa23.64■■□□□ 1.37
BRAT1-201ENST00000340611 IGF1RP08069 1367 aa23.63■■□□□ 1.37
BRAT1-201ENST00000340611 ABCA10Q8WWZ4 1543 aa23.62■■□□□ 1.37
BRAT1-201ENST00000340611 KIF21BO75037 1637 aa23.59■■□□□ 1.37
BRAT1-201ENST00000340611 THOC2Q8NI27 1593 aaKnown RBP23.58■■□□□ 1.37
BRAT1-201ENST00000340611 WDR62O43379 1518 aa23.58■■□□□ 1.36
BRAT1-201ENST00000340611 PRXQ9BXM0 1461 aa23.56■■□□□ 1.36
BRAT1-201ENST00000340611 TARBP1Q13395 1621 aaKnown RBP23.55■■□□□ 1.36
BRAT1-201ENST00000340611 AQRO60306 1485 aaKnown RBP eCLIP23.55■■□□□ 1.366e-7■■■■□ 23.8
BRAT1-201ENST00000340611 WDR97A6NE52 1622 aa23.55■■□□□ 1.36
BRAT1-201ENST00000340611 TNIKQ9UKE5 1360 aa23.54■■□□□ 1.36
BRAT1-201ENST00000340611 CEP162Q5TB80 1403 aa23.53■■□□□ 1.36
BRAT1-201ENST00000340611 ZNF608Q9ULD9 1512 aaPredicted RBP23.53■■□□□ 1.36
BRAT1-201ENST00000340611 CARMIL1Q5VZK9 1371 aa23.51■■□□□ 1.35
BRAT1-201ENST00000340611 GAPVD1Q14C86 1478 aa23.49■■□□□ 1.35
BRAT1-201ENST00000340611 ABCA5Q8WWZ7 1642 aa23.45■■□□□ 1.34
BRAT1-201ENST00000340611 TRIM26Q12899 539 aaPredicted RBP23.42■■□□□ 1.34
BRAT1-201ENST00000340611 ERICH3Q5RHP9 1530 aa23.41■■□□□ 1.34
BRAT1-201ENST00000340611 IFT140Q96RY7 1462 aa23.4■■□□□ 1.34
BRAT1-201ENST00000340611 TTBK1Q5TCY1 1321 aaPredicted RBP23.36■■□□□ 1.33
BRAT1-201ENST00000340611 CLIP1P30622 1438 aa23.35■■□□□ 1.33
BRAT1-201ENST00000340611 PBRM1Q86U86 1689 aa23.33■■□□□ 1.33
BRAT1-201ENST00000340611 EIF4G3O43432 1585 aaKnown RBP23.31■■□□□ 1.32
BRAT1-201ENST00000340611 CUL7Q14999 1698 aa23.27■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms