RNA–Protein interactions for RNA: ENST00000340552.4

LIMK2-203, Transcript of LIM domain kinase 2, humanhuman

TSL 1 (best) BASIC

Gene LIMK2, Length 2,789 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK2-203ENST00000340552 NISCHQ9Y2I1 1504 aa31.99■■■□□ 2.71
LIMK2-203ENST00000340552 CCDC180Q9P1Z9 1646 aa27.68■■■□□ 2.02
LIMK2-203ENST00000340552 ZCCHC6Q5VYS8 1495 aaKnown RBP26.92■■□□□ 1.9
LIMK2-203ENST00000340552 DCAF8L2P0C7V8 631 aa26.5■■□□□ 1.83
LIMK2-203ENST00000340552 SHROOM4Q9ULL8 1493 aa26.47■■□□□ 1.83
LIMK2-203ENST00000340552 DCAF1Q9Y4B6 1507 aa26.37■■□□□ 1.81
LIMK2-203ENST00000340552 ABCC9O60706 1549 aa26.05■■□□□ 1.76
LIMK2-203ENST00000340552 HRCP23327 699 aa26.03■■□□□ 1.76
LIMK2-203ENST00000340552 MYO15BQ96JP2 1530 aa25.93■■□□□ 1.74
LIMK2-203ENST00000340552 NACADO15069 1562 aa25.73■■□□□ 1.71
LIMK2-203ENST00000340552 SUPT5HO00267 1087 aaKnown RBP25.62■■□□□ 1.69
LIMK2-203ENST00000340552 SCRIBQ14160 1630 aa25.62■■□□□ 1.69
LIMK2-203ENST00000340552 PELP1Q8IZL8 1130 aaKnown RBP25.59■■□□□ 1.69
LIMK2-203ENST00000340552 PPARGC1BQ86YN6 1023 aaKnown RBP25.49■■□□□ 1.67
LIMK2-203ENST00000340552 RB1CC1Q8TDY2 1594 aa25.46■■□□□ 1.67
LIMK2-203ENST00000340552 PCGF6Q9BYE7 350 aa25.28■■□□□ 1.64
LIMK2-203ENST00000340552 UNC13AQ9UPW8 1703 aa25.01■■□□□ 1.59
LIMK2-203ENST00000340552 RSF1Q96T23 1441 aaPredicted RBP24.97■■□□□ 1.59
LIMK2-203ENST00000340552 CECR2Q9BXF3 1484 aa24.9■■□□□ 1.58
LIMK2-203ENST00000340552 SCAF1Q9H7N4 1312 aaKnown RBP24.85■■□□□ 1.57
LIMK2-203ENST00000340552 MROH2BQ7Z745 1585 aa24.76■■□□□ 1.55
LIMK2-203ENST00000340552 CHIC1Q5VXU3 224 aa24.73■■□□□ 1.55
LIMK2-203ENST00000340552 BICRAQ9NZM4 1560 aa24.71■■□□□ 1.55
LIMK2-203ENST00000340552 PABPN1Q86U42 306 aaKnown RBP eCLIP24.67■■□□□ 1.54
LIMK2-203ENST00000340552 MYT1Q01538 1121 aa24.67■■□□□ 1.54
LIMK2-203ENST00000340552 BAZ1AQ9NRL2 1556 aaPredicted RBP24.66■■□□□ 1.54
LIMK2-203ENST00000340552 WIZO95785 1651 aa24.59■■□□□ 1.53
LIMK2-203ENST00000340552 SMARCA4P51532 1647 aa24.53■■□□□ 1.52
LIMK2-203ENST00000340552 TRIM26Q12899 539 aaPredicted RBP24.37■■□□□ 1.49
LIMK2-203ENST00000340552 TOP2AP11388 1531 aaKnown RBP24.28■■□□□ 1.48
LIMK2-203ENST00000340552 ZEB1P37275 1124 aaPredicted RBP24.26■■□□□ 1.47
LIMK2-203ENST00000340552 LOC105371045A0A1W2PR82 267 aa24.2■■□□□ 1.46
LIMK2-203ENST00000340552 PEG3Q9GZU2 1588 aa24.17■■□□□ 1.46
LIMK2-203ENST00000340552 ACIN1Q9UKV3 1341 aaKnown RBP24.1■■□□□ 1.45
LIMK2-203ENST00000340552 SMARCA2P51531 1590 aa24.09■■□□□ 1.45
LIMK2-203ENST00000340552 CCDC88BA6NC98 1476 aa24.09■■□□□ 1.45
LIMK2-203ENST00000340552 ATAD2BQ9ULI0 1458 aa24.06■■□□□ 1.44
LIMK2-203ENST00000340552 NEUROD1Q13562 356 aa24.03■■□□□ 1.44
LIMK2-203ENST00000340552 TRIM41Q8WV44 630 aa24.02■■□□□ 1.44
LIMK2-203ENST00000340552 EIF4G1Q04637 1599 aaKnown RBP23.99■■□□□ 1.43
LIMK2-203ENST00000340552 BAZ1BQ9UIG0 1483 aaKnown RBP23.95■■□□□ 1.42
LIMK2-203ENST00000340552 GTF3C3Q9Y5Q9 886 aa23.91■■□□□ 1.42
LIMK2-203ENST00000340552 NCAPD3P42695 1498 aa23.77■■□□□ 1.4
LIMK2-203ENST00000340552 HMGXB3Q12766 1538 aa23.74■■□□□ 1.39
LIMK2-203ENST00000340552 ABCC8Q09428 1581 aa23.72■■□□□ 1.39
LIMK2-203ENST00000340552 CENPBP07199 599 aaPredicted RBP23.67■■□□□ 1.38
LIMK2-203ENST00000340552 FAM9AQ8IZU1 332 aaPredicted RBP23.66■■□□□ 1.38
LIMK2-203ENST00000340552 CC2D2AQ9P2K1 1620 aa23.53■■□□□ 1.36
LIMK2-203ENST00000340552 WRNQ14191 1432 aaPredicted RBP eCLIP23.49■■□□□ 1.35
LIMK2-203ENST00000340552 DIEXFQ68CQ4 756 aaKnown RBP23.46■■□□□ 1.35
LIMK2-203ENST00000340552 SYNJ1O43426 1573 aa23.39■■□□□ 1.33
LIMK2-203ENST00000340552 EHMT2Q96KQ7 1210 aa23.38■■□□□ 1.33
LIMK2-203ENST00000340552 SOGA1O94964 1423 aa23.34■■□□□ 1.33
LIMK2-203ENST00000340552 CFTRP13569 1480 aa23.34■■□□□ 1.33
LIMK2-203ENST00000340552 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.31■■□□□ 1.32
LIMK2-203ENST00000340552 EEA1Q15075 1411 aa23.26■■□□□ 1.31
LIMK2-203ENST00000340552 RUSC2Q8N2Y8 1516 aa23.25■■□□□ 1.31
LIMK2-203ENST00000340552 TTBK1Q5TCY1 1321 aaPredicted RBP23.25■■□□□ 1.31
LIMK2-203ENST00000340552 CCER1Q8TC90 406 aaPredicted RBP23.24■■□□□ 1.31
LIMK2-203ENST00000340552 TOP2BQ02880 1626 aa23.23■■□□□ 1.31
LIMK2-203ENST00000340552 CADPSQ9ULU8 1353 aa23.22■■□□□ 1.31
LIMK2-203ENST00000340552 PRDM2Q13029 1718 aa23.22■■□□□ 1.31
LIMK2-203ENST00000340552 CSRNP3Q8WYN3 585 aa23.19■■□□□ 1.3
LIMK2-203ENST00000340552 BIVM-ERCC5R4GMW8 1640 aa23.19■■□□□ 1.3
LIMK2-203ENST00000340552 BCL11AQ9H165 835 aa23.13■■□□□ 1.29
LIMK2-203ENST00000340552 CUX1P39880 1505 aa23.12■■□□□ 1.29
LIMK2-203ENST00000340552 YTHDC1Q96MU7 727 aaKnown RBP23.12■■□□□ 1.29
LIMK2-203ENST00000340552 GOLGA3Q08378 1498 aa23■■□□□ 1.27
LIMK2-203ENST00000340552 TNIKQ9UKE5 1360 aa22.99■■□□□ 1.27
LIMK2-203ENST00000340552 FANCD2Q9BXW9 1451 aa22.97■■□□□ 1.27
LIMK2-203ENST00000340552 NESP48681 1621 aa22.97■■□□□ 1.27
LIMK2-203ENST00000340552 UBTFP17480 764 aaKnown RBP22.97■■□□□ 1.27
LIMK2-203ENST00000340552 CEP164Q9UPV0 1460 aa22.97■■□□□ 1.27
LIMK2-203ENST00000340552 KIF21BO75037 1637 aa22.96■■□□□ 1.27
LIMK2-203ENST00000340552 DNAJC5BQ9UF47 199 aa22.95■■□□□ 1.27
LIMK2-203ENST00000340552 ZNF316A6NFI3 1004 aaPredicted RBP22.92■■□□□ 1.26
LIMK2-203ENST00000340552 CEP162Q5TB80 1403 aa22.92■■□□□ 1.26
LIMK2-203ENST00000340552 ANP32EQ9BTT0 268 aa22.91■■□□□ 1.26
LIMK2-203ENST00000340552 LAMC3Q9Y6N6 1575 aa22.9■■□□□ 1.26
LIMK2-203ENST00000340552 KIF27Q86VH2 1401 aa22.86■■□□□ 1.25
LIMK2-203ENST00000340552 MIER1Q8N108 512 aa22.85■■□□□ 1.25
LIMK2-203ENST00000340552 RAPGEF2Q9Y4G8 1499 aa22.84■■□□□ 1.25
LIMK2-203ENST00000340552 FGD5Q6ZNL6 1462 aa22.83■■□□□ 1.25
LIMK2-203ENST00000340552 DNMBPQ6XZF7 1577 aa22.79■■□□□ 1.24
LIMK2-203ENST00000340552 PRXQ9BXM0 1461 aa22.77■■□□□ 1.24
LIMK2-203ENST00000340552 CUX2O14529 1486 aa22.76■■□□□ 1.23
LIMK2-203ENST00000340552 TOPBP1Q92547 1522 aa22.75■■□□□ 1.23
LIMK2-203ENST00000340552 PDS5BQ9NTI5 1447 aa22.75■■□□□ 1.23
LIMK2-203ENST00000340552 ERICH3Q5RHP9 1530 aa22.74■■□□□ 1.23
LIMK2-203ENST00000340552 TSHZ2Q9NRE2 1034 aa22.7■■□□□ 1.22
LIMK2-203ENST00000340552 SUPT16HQ9Y5B9 1047 aaKnown RBP22.69■■□□□ 1.22
LIMK2-203ENST00000340552 POLA1P09884 1462 aaPredicted RBP22.67■■□□□ 1.22
LIMK2-203ENST00000340552 CLIP1P30622 1438 aa22.67■■□□□ 1.22
LIMK2-203ENST00000340552 URB2Q14146 1524 aaKnown RBP22.67■■□□□ 1.22
LIMK2-203ENST00000340552 KIF21AQ7Z4S6 1674 aa22.66■■□□□ 1.22
LIMK2-203ENST00000340552 IGF1RP08069 1367 aa22.64■■□□□ 1.21
LIMK2-203ENST00000340552 RAD54L2Q9Y4B4 1467 aa22.64■■□□□ 1.21
LIMK2-203ENST00000340552 ABCA10Q8WWZ4 1543 aa22.6■■□□□ 1.21
LIMK2-203ENST00000340552 RANGAP1P46060 587 aaPredicted RBP22.58■■□□□ 1.21
LIMK2-203ENST00000340552 CLSPNQ9HAW4 1339 aa22.57■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms