RNA–Protein interactions for RNA: ENST00000340192.11

ERCC1-203, Transcript of ERCC excision repair 1, endonuclease non-catalytic subunit, humanhuman

TSL 1 (best) BASIC

Gene ERCC1, Length 949 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC1-203ENST00000340192 NISCHQ9Y2I1 1504 aa35.88■■■■□ 3.33
ERCC1-203ENST00000340192 CCDC180Q9P1Z9 1646 aa32.01■■■□□ 2.72
ERCC1-203ENST00000340192 ABCC9O60706 1549 aa31.48■■■□□ 2.63
ERCC1-203ENST00000340192 RB1CC1Q8TDY2 1594 aa30.2■■■□□ 2.43
ERCC1-203ENST00000340192 NACADO15069 1562 aa30.11■■■□□ 2.41
ERCC1-203ENST00000340192 DCAF8L2P0C7V8 631 aa30.03■■■□□ 2.4
ERCC1-203ENST00000340192 MYO15BQ96JP2 1530 aa29.85■■■□□ 2.37
ERCC1-203ENST00000340192 ZCCHC6Q5VYS8 1495 aaKnown RBP29.84■■■□□ 2.37
ERCC1-203ENST00000340192 DCAF1Q9Y4B6 1507 aa29.66■■■□□ 2.34
ERCC1-203ENST00000340192 UNC13AQ9UPW8 1703 aa29.6■■■□□ 2.33
ERCC1-203ENST00000340192 PABPN1Q86U42 306 aaKnown RBP eCLIP29.37■■■□□ 2.29
ERCC1-203ENST00000340192 BICRAQ9NZM4 1560 aa29.31■■■□□ 2.28
ERCC1-203ENST00000340192 SCRIBQ14160 1630 aa29.2■■■□□ 2.27
ERCC1-203ENST00000340192 DNAJC5BQ9UF47 199 aa29.05■■■□□ 2.24
ERCC1-203ENST00000340192 SHROOM4Q9ULL8 1493 aa28.94■■■□□ 2.22
ERCC1-203ENST00000340192 EIF4G1Q04637 1599 aaKnown RBP28.54■■■□□ 2.16
ERCC1-203ENST00000340192 CC2D2AQ9P2K1 1620 aa28.49■■■□□ 2.15
ERCC1-203ENST00000340192 CECR2Q9BXF3 1484 aa28.29■■■□□ 2.12
ERCC1-203ENST00000340192 SMARCA4P51532 1647 aa27.9■■■□□ 2.06
ERCC1-203ENST00000340192 BAZ1AQ9NRL2 1556 aaPredicted RBP27.82■■■□□ 2.04
ERCC1-203ENST00000340192 NCAPD3P42695 1498 aa27.76■■■□□ 2.04
ERCC1-203ENST00000340192 ATAD2BQ9ULI0 1458 aa27.76■■■□□ 2.04
ERCC1-203ENST00000340192 SMARCA2P51531 1590 aa27.73■■■□□ 2.03
ERCC1-203ENST00000340192 MROH2BQ7Z745 1585 aa27.65■■■□□ 2.02
ERCC1-203ENST00000340192 HMGXB3Q12766 1538 aa27.64■■■□□ 2.02
ERCC1-203ENST00000340192 PEG3Q9GZU2 1588 aa27.61■■■□□ 2.01
ERCC1-203ENST00000340192 BAZ1BQ9UIG0 1483 aaKnown RBP27.54■■■□□ 2
ERCC1-203ENST00000340192 WIZO95785 1651 aa27.38■■□□□ 1.97
ERCC1-203ENST00000340192 RSF1Q96T23 1441 aaPredicted RBP27.25■■□□□ 1.95
ERCC1-203ENST00000340192 NESP48681 1621 aa27.19■■□□□ 1.94
ERCC1-203ENST00000340192 ERCC6Q03468 1493 aa27.14■■□□□ 1.94
ERCC1-203ENST00000340192 LAMC3Q9Y6N6 1575 aa27.09■■□□□ 1.93
ERCC1-203ENST00000340192 TOP2AP11388 1531 aaKnown RBP27.04■■□□□ 1.92
ERCC1-203ENST00000340192 CADPSQ9ULU8 1353 aa26.94■■□□□ 1.9
ERCC1-203ENST00000340192 KIF21AQ7Z4S6 1674 aa26.92■■□□□ 1.9
ERCC1-203ENST00000340192 CUX2O14529 1486 aa26.91■■□□□ 1.9
ERCC1-203ENST00000340192 PDS5BQ9NTI5 1447 aa26.89■■□□□ 1.89
ERCC1-203ENST00000340192 THOC2Q8NI27 1593 aaKnown RBP26.84■■□□□ 1.89
ERCC1-203ENST00000340192 CFTRP13569 1480 aa26.76■■□□□ 1.87
ERCC1-203ENST00000340192 CCDC88BA6NC98 1476 aa26.72■■□□□ 1.87
ERCC1-203ENST00000340192 FANCD2Q9BXW9 1451 aa26.66■■□□□ 1.86
ERCC1-203ENST00000340192 MRC2Q9UBG0 1479 aa26.64■■□□□ 1.86
ERCC1-203ENST00000340192 CEP164Q9UPV0 1460 aa26.64■■□□□ 1.86
ERCC1-203ENST00000340192 PRDM2Q13029 1718 aa26.63■■□□□ 1.85
ERCC1-203ENST00000340192 WDR62O43379 1518 aa26.57■■□□□ 1.84
ERCC1-203ENST00000340192 URB2Q14146 1524 aaKnown RBP26.42■■□□□ 1.82
ERCC1-203ENST00000340192 SUPT5HO00267 1087 aaKnown RBP26.41■■□□□ 1.82
ERCC1-203ENST00000340192 DNAJC5Q9H3Z4 198 aa26.29■■□□□ 1.8
ERCC1-203ENST00000340192 TOPBP1Q92547 1522 aa26.21■■□□□ 1.79
ERCC1-203ENST00000340192 ABCC8Q09428 1581 aa26.18■■□□□ 1.78
ERCC1-203ENST00000340192 DNMBPQ6XZF7 1577 aa26.18■■□□□ 1.78
ERCC1-203ENST00000340192 IFT140Q96RY7 1462 aa26.08■■□□□ 1.77
ERCC1-203ENST00000340192 ZNF608Q9ULD9 1512 aaPredicted RBP26■■□□□ 1.75
ERCC1-203ENST00000340192 POLA1P09884 1462 aaPredicted RBP25.98■■□□□ 1.75
ERCC1-203ENST00000340192 TARBP1Q13395 1621 aaKnown RBP25.97■■□□□ 1.75
ERCC1-203ENST00000340192 CUX1P39880 1505 aa25.96■■□□□ 1.75
ERCC1-203ENST00000340192 EIF4G3O43432 1585 aaKnown RBP25.92■■□□□ 1.74
ERCC1-203ENST00000340192 FGD5Q6ZNL6 1462 aa25.89■■□□□ 1.73
ERCC1-203ENST00000340192 RAD54L2Q9Y4B4 1467 aa25.87■■□□□ 1.73
ERCC1-203ENST00000340192 SOGA1O94964 1423 aa25.85■■□□□ 1.73
ERCC1-203ENST00000340192 AQRO60306 1485 aaKnown RBP eCLIP25.82■■□□□ 1.722e-7■■■■■ 39
ERCC1-203ENST00000340192 OSCARQ8IYS5 282 aa25.75■■□□□ 1.71
ERCC1-203ENST00000340192 WDR97A6NE52 1622 aa25.74■■□□□ 1.71
ERCC1-203ENST00000340192 TDRD9Q8NDG6 1382 aaKnown RBP25.73■■□□□ 1.71
ERCC1-203ENST00000340192 BIVM-ERCC5R4GMW8 1640 aa25.7■■□□□ 1.71
ERCC1-203ENST00000340192 WRNQ14191 1432 aaPredicted RBP eCLIP25.7■■□□□ 1.7
ERCC1-203ENST00000340192 TOP2BQ02880 1626 aa25.7■■□□□ 1.7
ERCC1-203ENST00000340192 SYNJ1O43426 1573 aa25.69■■□□□ 1.7
ERCC1-203ENST00000340192 CHD1O14646 1710 aa25.66■■□□□ 1.7
ERCC1-203ENST00000340192 ABCA10Q8WWZ4 1543 aa25.62■■□□□ 1.69
ERCC1-203ENST00000340192 PBRM1Q86U86 1689 aa25.58■■□□□ 1.69
ERCC1-203ENST00000340192 GRIN2BQ13224 1484 aa25.58■■□□□ 1.69
ERCC1-203ENST00000340192 SNAPC4Q5SXM2 1469 aa25.58■■□□□ 1.69
ERCC1-203ENST00000340192 ABCA5Q8WWZ7 1642 aa25.57■■□□□ 1.68
ERCC1-203ENST00000340192 GAPVD1Q14C86 1478 aa25.56■■□□□ 1.68
ERCC1-203ENST00000340192 FBLN2P98095 1184 aa25.54■■□□□ 1.68
ERCC1-203ENST00000340192 MAGI1Q96QZ7 1491 aaPredicted RBP25.53■■□□□ 1.68
ERCC1-203ENST00000340192 SYNJ2O15056 1496 aa25.44■■□□□ 1.66
ERCC1-203ENST00000340192 CHMP7Q8WUX9 453 aaPredicted RBP25.43■■□□□ 1.66
ERCC1-203ENST00000340192 RIMBP3CA6NJZ7 1639 aa25.41■■□□□ 1.66
ERCC1-203ENST00000340192 RIMBP3BA6NNM3 1639 aa25.41■■□□□ 1.66
ERCC1-203ENST00000340192 RIMBP3Q9UFD9 1639 aa25.41■■□□□ 1.66
ERCC1-203ENST00000340192 TRIM41Q8WV44 630 aa25.37■■□□□ 1.65
ERCC1-203ENST00000340192 ARHGEF11O15085 1522 aa25.37■■□□□ 1.65
ERCC1-203ENST00000340192 ADAMTS12P58397 1594 aa25.33■■□□□ 1.65
ERCC1-203ENST00000340192 ERICH3Q5RHP9 1530 aa25.32■■□□□ 1.64
ERCC1-203ENST00000340192 CLASP1Q7Z460 1538 aa25.32■■□□□ 1.64
ERCC1-203ENST00000340192 FHAD1B1AJZ9 1412 aa25.25■■□□□ 1.63
ERCC1-203ENST00000340192 GRIN2AQ12879 1464 aa25.25■■□□□ 1.63
ERCC1-203ENST00000340192 CEP170Q5SW79 1584 aa25.16■■□□□ 1.62
ERCC1-203ENST00000340192 KIF27Q86VH2 1401 aa25.16■■□□□ 1.62
ERCC1-203ENST00000340192 ARAP1Q96P48 1450 aa25.15■■□□□ 1.62
ERCC1-203ENST00000340192 NUP160Q12769 1436 aa25.14■■□□□ 1.62
ERCC1-203ENST00000340192 CYB5RLQ6IPT4 315 aa25.12■■□□□ 1.61
ERCC1-203ENST00000340192 IGF1RP08069 1367 aa25.08■■□□□ 1.61
ERCC1-203ENST00000340192 CUL7Q14999 1698 aa25.08■■□□□ 1.61
ERCC1-203ENST00000340192 SHROOM2Q13796 1616 aa25.01■■□□□ 1.59
ERCC1-203ENST00000340192 ERCC6L2Q5T890 1561 aa24.97■■□□□ 1.59
ERCC1-203ENST00000340192 RUSC2Q8N2Y8 1516 aa24.97■■□□□ 1.59
ERCC1-203ENST00000340192 CARMIL1Q5VZK9 1371 aa24.93■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms