RNA–Protein interactions for RNA: ENST00000334654.4

CHGA-202, Transcript of chromogranin A, humanhuman

TSL 1 (best) BASIC

Gene CHGA, Length 1,474 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHGA-202ENST00000334654 NISCHQ9Y2I1 1504 aa41.61■■■■■ 4.25
CHGA-202ENST00000334654 CCDC180Q9P1Z9 1646 aa36.69■■■■□ 3.46
CHGA-202ENST00000334654 ABCC9O60706 1549 aa35.36■■■■□ 3.25
CHGA-202ENST00000334654 ZCCHC6Q5VYS8 1495 aaKnown RBP34.78■■■■□ 3.16
CHGA-202ENST00000334654 DCAF8L2P0C7V8 631 aa34.47■■■■□ 3.11
CHGA-202ENST00000334654 DCAF1Q9Y4B6 1507 aa34.44■■■■□ 3.1
CHGA-202ENST00000334654 MYO15BQ96JP2 1530 aa34.36■■■■□ 3.09
CHGA-202ENST00000334654 NACADO15069 1562 aa34.36■■■■□ 3.09
CHGA-202ENST00000334654 RB1CC1Q8TDY2 1594 aa34.24■■■■□ 3.07
CHGA-202ENST00000334654 UNC13AQ9UPW8 1703 aa33.57■■■□□ 2.97
CHGA-202ENST00000334654 SCRIBQ14160 1630 aa33.54■■■□□ 2.96
CHGA-202ENST00000334654 BICRAQ9NZM4 1560 aa33.28■■■□□ 2.92
CHGA-202ENST00000334654 SHROOM4Q9ULL8 1493 aa33.21■■■□□ 2.91
CHGA-202ENST00000334654 PABPN1Q86U42 306 aaKnown RBP eCLIP33.17■■■□□ 2.9
CHGA-202ENST00000334654 CECR2Q9BXF3 1484 aa32.39■■■□□ 2.78
CHGA-202ENST00000334654 EIF4G1Q04637 1599 aaKnown RBP32.3■■■□□ 2.76
CHGA-202ENST00000334654 BAZ1AQ9NRL2 1556 aaPredicted RBP32.17■■■□□ 2.74
CHGA-202ENST00000334654 SMARCA4P51532 1647 aa32.15■■■□□ 2.74
CHGA-202ENST00000334654 MROH2BQ7Z745 1585 aa32.1■■■□□ 2.73
CHGA-202ENST00000334654 DNAJC5BQ9UF47 199 aa32.03■■■□□ 2.72
CHGA-202ENST00000334654 CC2D2AQ9P2K1 1620 aa32.03■■■□□ 2.72
CHGA-202ENST00000334654 RSF1Q96T23 1441 aaPredicted RBP31.94■■■□□ 2.7
CHGA-202ENST00000334654 PEG3Q9GZU2 1588 aa31.85■■■□□ 2.69
CHGA-202ENST00000334654 ATAD2BQ9ULI0 1458 aa31.84■■■□□ 2.69
CHGA-202ENST00000334654 WIZO95785 1651 aa31.79■■■□□ 2.68
CHGA-202ENST00000334654 SMARCA2P51531 1590 aa31.78■■■□□ 2.68
CHGA-202ENST00000334654 NCAPD3P42695 1498 aa31.73■■■□□ 2.67
CHGA-202ENST00000334654 HMGXB3Q12766 1538 aa31.6■■■□□ 2.65
CHGA-202ENST00000334654 BAZ1BQ9UIG0 1483 aaKnown RBP31.56■■■□□ 2.64
CHGA-202ENST00000334654 SUPT5HO00267 1087 aaKnown RBP31.53■■■□□ 2.64
CHGA-202ENST00000334654 TOP2AP11388 1531 aaKnown RBP31.44■■■□□ 2.62
CHGA-202ENST00000334654 CCDC88BA6NC98 1476 aa31.11■■■□□ 2.57
CHGA-202ENST00000334654 CADPSQ9ULU8 1353 aa30.83■■■□□ 2.53
CHGA-202ENST00000334654 NESP48681 1621 aa30.82■■■□□ 2.52
CHGA-202ENST00000334654 CFTRP13569 1480 aa30.78■■■□□ 2.52
CHGA-202ENST00000334654 LAMC3Q9Y6N6 1575 aa30.77■■■□□ 2.52
CHGA-202ENST00000334654 PRDM2Q13029 1718 aa30.58■■■□□ 2.49
CHGA-202ENST00000334654 PDS5BQ9NTI5 1447 aa30.51■■■□□ 2.47
CHGA-202ENST00000334654 FANCD2Q9BXW9 1451 aa30.46■■■□□ 2.47
CHGA-202ENST00000334654 KIF21AQ7Z4S6 1674 aa30.45■■■□□ 2.47
CHGA-202ENST00000334654 ERCC6Q03468 1493 aa30.36■■■□□ 2.45
CHGA-202ENST00000334654 CEP164Q9UPV0 1460 aa30.34■■■□□ 2.45
CHGA-202ENST00000334654 THOC2Q8NI27 1593 aaKnown RBP30.2■■■□□ 2.43
CHGA-202ENST00000334654 MRC2Q9UBG0 1479 aa30.19■■■□□ 2.42
CHGA-202ENST00000334654 URB2Q14146 1524 aaKnown RBP30.16■■■□□ 2.42
CHGA-202ENST00000334654 ABCC8Q09428 1581 aa30.15■■■□□ 2.42
CHGA-202ENST00000334654 WDR62O43379 1518 aa30.09■■■□□ 2.41
CHGA-202ENST00000334654 CUX1P39880 1505 aa30.06■■■□□ 2.4
CHGA-202ENST00000334654 TOPBP1Q92547 1522 aa30.06■■■□□ 2.4
CHGA-202ENST00000334654 DNMBPQ6XZF7 1577 aa30.05■■■□□ 2.4
CHGA-202ENST00000334654 WRNQ14191 1432 aaPredicted RBP eCLIP30.05■■■□□ 2.4
CHGA-202ENST00000334654 SYNJ1O43426 1573 aa29.99■■■□□ 2.39
CHGA-202ENST00000334654 TOP2BQ02880 1626 aa29.94■■■□□ 2.38
CHGA-202ENST00000334654 BIVM-ERCC5R4GMW8 1640 aa29.94■■■□□ 2.38
CHGA-202ENST00000334654 CUX2O14529 1486 aa29.87■■■□□ 2.37
CHGA-202ENST00000334654 POLA1P09884 1462 aaPredicted RBP29.84■■■□□ 2.37
CHGA-202ENST00000334654 FGD5Q6ZNL6 1462 aa29.84■■■□□ 2.37
CHGA-202ENST00000334654 CHIC1Q5VXU3 224 aa29.83■■■□□ 2.37
CHGA-202ENST00000334654 RAD54L2Q9Y4B4 1467 aa29.72■■■□□ 2.35
CHGA-202ENST00000334654 TRIM41Q8WV44 630 aa29.72■■■□□ 2.35
CHGA-202ENST00000334654 SOGA1O94964 1423 aa29.71■■■□□ 2.35
CHGA-202ENST00000334654 TARBP1Q13395 1621 aaKnown RBP29.71■■■□□ 2.35
CHGA-202ENST00000334654 IFT140Q96RY7 1462 aa29.69■■■□□ 2.34
CHGA-202ENST00000334654 WDR97A6NE52 1622 aa29.6■■■□□ 2.33
CHGA-202ENST00000334654 ABCA10Q8WWZ4 1543 aa29.59■■■□□ 2.33
CHGA-202ENST00000334654 ZNF608Q9ULD9 1512 aaPredicted RBP29.56■■■□□ 2.32
CHGA-202ENST00000334654 TDRD9Q8NDG6 1382 aaKnown RBP29.5■■■□□ 2.31
CHGA-202ENST00000334654 AQRO60306 1485 aaKnown RBP eCLIP29.46■■■□□ 2.31
CHGA-202ENST00000334654 EIF4G3O43432 1585 aaKnown RBP29.43■■■□□ 2.3
CHGA-202ENST00000334654 ABCA5Q8WWZ7 1642 aa29.43■■■□□ 2.3
CHGA-202ENST00000334654 RUSC2Q8N2Y8 1516 aa29.38■■■□□ 2.29
CHGA-202ENST00000334654 GAPVD1Q14C86 1478 aa29.37■■■□□ 2.29
CHGA-202ENST00000334654 KIF27Q86VH2 1401 aa29.35■■■□□ 2.29
CHGA-202ENST00000334654 PBRM1Q86U86 1689 aa29.29■■■□□ 2.28
CHGA-202ENST00000334654 GRIN2BQ13224 1484 aa29.28■■■□□ 2.28
CHGA-202ENST00000334654 IGF1RP08069 1367 aa29.24■■■□□ 2.27
CHGA-202ENST00000334654 ERICH3Q5RHP9 1530 aa29.23■■■□□ 2.27
CHGA-202ENST00000334654 EEA1Q15075 1411 aa29.17■■■□□ 2.26
CHGA-202ENST00000334654 SNAPC4Q5SXM2 1469 aa29.17■■■□□ 2.26
CHGA-202ENST00000334654 MAGI1Q96QZ7 1491 aaPredicted RBP29.13■■■□□ 2.25
CHGA-202ENST00000334654 FAM9AQ8IZU1 332 aaPredicted RBP29.12■■■□□ 2.25
CHGA-202ENST00000334654 CSRNP3Q8WYN3 585 aa29.1■■■□□ 2.25
CHGA-202ENST00000334654 ADAMTS12P58397 1594 aa29.08■■■□□ 2.25
CHGA-202ENST00000334654 CUL7Q14999 1698 aa29.06■■■□□ 2.24
CHGA-202ENST00000334654 FHAD1B1AJZ9 1412 aa29.05■■■□□ 2.24
CHGA-202ENST00000334654 CARMIL1Q5VZK9 1371 aa29.04■■■□□ 2.24
CHGA-202ENST00000334654 SYNJ2O15056 1496 aa29.02■■■□□ 2.24
CHGA-202ENST00000334654 PRXQ9BXM0 1461 aa29■■■□□ 2.23
CHGA-202ENST00000334654 CHD1O14646 1710 aa28.97■■■□□ 2.23
CHGA-202ENST00000334654 CHMP7Q8WUX9 453 aaPredicted RBP28.94■■■□□ 2.22
CHGA-202ENST00000334654 GRIN2AQ12879 1464 aa28.92■■■□□ 2.22
CHGA-202ENST00000334654 FBLN2P98095 1184 aa28.92■■■□□ 2.22
CHGA-202ENST00000334654 RAPGEF2Q9Y4G8 1499 aa28.92■■■□□ 2.22
CHGA-202ENST00000334654 KIF21BO75037 1637 aa28.87■■■□□ 2.21
CHGA-202ENST00000334654 NUP160Q12769 1436 aa28.79■■■□□ 2.2
CHGA-202ENST00000334654 CEP170Q5SW79 1584 aa28.78■■■□□ 2.2
CHGA-202ENST00000334654 OSCARQ8IYS5 282 aa28.75■■■□□ 2.19
CHGA-202ENST00000334654 GOLGA3Q08378 1498 aa28.71■■■□□ 2.19
CHGA-202ENST00000334654 EHMT2Q96KQ7 1210 aa28.69■■■□□ 2.18
CHGA-202ENST00000334654 CLASP1Q7Z460 1538 aa28.67■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms