RNA–Protein interactions for RNA: ENST00000334409.9

PDCD1-201, Transcript of programmed cell death 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDCD1, Length 2,114 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDCD1-201ENST00000334409 NISCHQ9Y2I1 1504 aa37.64■■■■□ 3.62
PDCD1-201ENST00000334409 CCDC180Q9P1Z9 1646 aa32.86■■■□□ 2.85
PDCD1-201ENST00000334409 ABCC9O60706 1549 aa31.66■■■□□ 2.66
PDCD1-201ENST00000334409 ZCCHC6Q5VYS8 1495 aaKnown RBP31.52■■■□□ 2.64
PDCD1-201ENST00000334409 DCAF8L2P0C7V8 631 aa31.52■■■□□ 2.64
PDCD1-201ENST00000334409 DCAF1Q9Y4B6 1507 aa30.98■■■□□ 2.55
PDCD1-201ENST00000334409 NACADO15069 1562 aa30.74■■■□□ 2.51
PDCD1-201ENST00000334409 SHROOM4Q9ULL8 1493 aa30.73■■■□□ 2.51
PDCD1-201ENST00000334409 MYO15BQ96JP2 1530 aa30.72■■■□□ 2.51
PDCD1-201ENST00000334409 RB1CC1Q8TDY2 1594 aa30.59■■■□□ 2.49
PDCD1-201ENST00000334409 SCRIBQ14160 1630 aa30.39■■■□□ 2.46
PDCD1-201ENST00000334409 UNC13AQ9UPW8 1703 aa30.03■■■□□ 2.4
PDCD1-201ENST00000334409 PABPN1Q86U42 306 aaKnown RBP eCLIP29.89■■■□□ 2.38
PDCD1-201ENST00000334409 BICRAQ9NZM4 1560 aa29.73■■■□□ 2.35
PDCD1-201ENST00000334409 CECR2Q9BXF3 1484 aa29.4■■■□□ 2.3
PDCD1-201ENST00000334409 SUPT5HO00267 1087 aaKnown RBP29.39■■■□□ 2.3
PDCD1-201ENST00000334409 MROH2BQ7Z745 1585 aa29.14■■■□□ 2.26
PDCD1-201ENST00000334409 RSF1Q96T23 1441 aaPredicted RBP29.12■■■□□ 2.25
PDCD1-201ENST00000334409 BAZ1AQ9NRL2 1556 aaPredicted RBP29.06■■■□□ 2.24
PDCD1-201ENST00000334409 SMARCA4P51532 1647 aa29.01■■■□□ 2.23
PDCD1-201ENST00000334409 WIZO95785 1651 aa28.9■■■□□ 2.22
PDCD1-201ENST00000334409 EIF4G1Q04637 1599 aaKnown RBP28.87■■■□□ 2.21
PDCD1-201ENST00000334409 ATAD2BQ9ULI0 1458 aa28.64■■■□□ 2.18
PDCD1-201ENST00000334409 PEG3Q9GZU2 1588 aa28.58■■■□□ 2.17
PDCD1-201ENST00000334409 CC2D2AQ9P2K1 1620 aa28.56■■■□□ 2.16
PDCD1-201ENST00000334409 SMARCA2P51531 1590 aa28.55■■■□□ 2.16
PDCD1-201ENST00000334409 TOP2AP11388 1531 aaKnown RBP28.48■■■□□ 2.15
PDCD1-201ENST00000334409 BAZ1BQ9UIG0 1483 aaKnown RBP28.47■■■□□ 2.15
PDCD1-201ENST00000334409 NCAPD3P42695 1498 aa28.41■■■□□ 2.14
PDCD1-201ENST00000334409 DNAJC5BQ9UF47 199 aa28.34■■■□□ 2.13
PDCD1-201ENST00000334409 HMGXB3Q12766 1538 aa28.29■■■□□ 2.12
PDCD1-201ENST00000334409 CCDC88BA6NC98 1476 aa28.28■■■□□ 2.12
PDCD1-201ENST00000334409 HRCP23327 699 aa27.97■■■□□ 2.07
PDCD1-201ENST00000334409 CHIC1Q5VXU3 224 aa27.83■■■□□ 2.05
PDCD1-201ENST00000334409 PELP1Q8IZL8 1130 aaKnown RBP27.8■■■□□ 2.04
PDCD1-201ENST00000334409 CADPSQ9ULU8 1353 aa27.71■■■□□ 2.03
PDCD1-201ENST00000334409 CFTRP13569 1480 aa27.7■■■□□ 2.02
PDCD1-201ENST00000334409 NESP48681 1621 aa27.7■■■□□ 2.02
PDCD1-201ENST00000334409 ABCC8Q09428 1581 aa27.63■■■□□ 2.01
PDCD1-201ENST00000334409 TRIM41Q8WV44 630 aa27.56■■■□□ 2
PDCD1-201ENST00000334409 LAMC3Q9Y6N6 1575 aa27.48■■□□□ 1.99
PDCD1-201ENST00000334409 PRDM2Q13029 1718 aa27.46■■□□□ 1.99
PDCD1-201ENST00000334409 FANCD2Q9BXW9 1451 aa27.42■■□□□ 1.98
PDCD1-201ENST00000334409 WRNQ14191 1432 aaPredicted RBP eCLIP27.41■■□□□ 1.98
PDCD1-201ENST00000334409 SYNJ1O43426 1573 aa27.33■■□□□ 1.97
PDCD1-201ENST00000334409 PDS5BQ9NTI5 1447 aa27.33■■□□□ 1.96
PDCD1-201ENST00000334409 KIF21AQ7Z4S6 1674 aa27.28■■□□□ 1.96
PDCD1-201ENST00000334409 CEP164Q9UPV0 1460 aa27.26■■□□□ 1.95
PDCD1-201ENST00000334409 CUX1P39880 1505 aa27.25■■□□□ 1.95
PDCD1-201ENST00000334409 FAM9AQ8IZU1 332 aaPredicted RBP27.19■■□□□ 1.94
PDCD1-201ENST00000334409 TOP2BQ02880 1626 aa27.17■■□□□ 1.94
PDCD1-201ENST00000334409 ERCC6Q03468 1493 aa27.15■■□□□ 1.94
PDCD1-201ENST00000334409 BIVM-ERCC5R4GMW8 1640 aa27.12■■□□□ 1.93
PDCD1-201ENST00000334409 URB2Q14146 1524 aaKnown RBP27.11■■□□□ 1.93
PDCD1-201ENST00000334409 TOPBP1Q92547 1522 aa27.07■■□□□ 1.92
PDCD1-201ENST00000334409 DNMBPQ6XZF7 1577 aa27.04■■□□□ 1.92
PDCD1-201ENST00000334409 SOGA1O94964 1423 aa27.04■■□□□ 1.92
PDCD1-201ENST00000334409 FGD5Q6ZNL6 1462 aa27.02■■□□□ 1.92
PDCD1-201ENST00000334409 MRC2Q9UBG0 1479 aa27■■□□□ 1.91
PDCD1-201ENST00000334409 RUSC2Q8N2Y8 1516 aa26.99■■□□□ 1.91
PDCD1-201ENST00000334409 MYT1Q01538 1121 aa26.98■■□□□ 1.91
PDCD1-201ENST00000334409 PCGF6Q9BYE7 350 aa26.96■■□□□ 1.91
PDCD1-201ENST00000334409 EHMT2Q96KQ7 1210 aa26.95■■□□□ 1.9
PDCD1-201ENST00000334409 POLA1P09884 1462 aaPredicted RBP26.93■■□□□ 1.9
PDCD1-201ENST00000334409 RAD54L2Q9Y4B4 1467 aa26.92■■□□□ 1.9
PDCD1-201ENST00000334409 LOC105371045A0A1W2PR82 267 aa26.89■■□□□ 1.9
PDCD1-201ENST00000334409 PPARGC1BQ86YN6 1023 aaKnown RBP26.89■■□□□ 1.9
PDCD1-201ENST00000334409 THOC2Q8NI27 1593 aaKnown RBP26.86■■□□□ 1.89
PDCD1-201ENST00000334409 WDR62O43379 1518 aa26.84■■□□□ 1.89
PDCD1-201ENST00000334409 CUX2O14529 1486 aa26.8■■□□□ 1.88
PDCD1-201ENST00000334409 CSRNP3Q8WYN3 585 aa26.77■■□□□ 1.88
PDCD1-201ENST00000334409 KIF27Q86VH2 1401 aa26.72■■□□□ 1.87
PDCD1-201ENST00000334409 TDRD9Q8NDG6 1382 aaKnown RBP26.71■■□□□ 1.87
PDCD1-201ENST00000334409 EEA1Q15075 1411 aa26.7■■□□□ 1.87
PDCD1-201ENST00000334409 ABCA10Q8WWZ4 1543 aa26.7■■□□□ 1.86
PDCD1-201ENST00000334409 TARBP1Q13395 1621 aaKnown RBP26.67■■□□□ 1.86
PDCD1-201ENST00000334409 WDR97A6NE52 1622 aa26.62■■□□□ 1.85
PDCD1-201ENST00000334409 IFT140Q96RY7 1462 aa26.6■■□□□ 1.85
PDCD1-201ENST00000334409 ZNF608Q9ULD9 1512 aaPredicted RBP26.59■■□□□ 1.85
PDCD1-201ENST00000334409 AQRO60306 1485 aaKnown RBP eCLIP26.59■■□□□ 1.85
PDCD1-201ENST00000334409 IGF1RP08069 1367 aa26.57■■□□□ 1.84
PDCD1-201ENST00000334409 GAPVD1Q14C86 1478 aa26.53■■□□□ 1.84
PDCD1-201ENST00000334409 ABCA5Q8WWZ7 1642 aa26.5■■□□□ 1.83
PDCD1-201ENST00000334409 ZEB1P37275 1124 aaPredicted RBP26.5■■□□□ 1.83
PDCD1-201ENST00000334409 UBTFP17480 764 aaKnown RBP26.48■■□□□ 1.83
PDCD1-201ENST00000334409 RAPGEF2Q9Y4G8 1499 aa26.48■■□□□ 1.83
PDCD1-201ENST00000334409 TRIM26Q12899 539 aaPredicted RBP26.45■■□□□ 1.83
PDCD1-201ENST00000334409 PRXQ9BXM0 1461 aa26.44■■□□□ 1.82
PDCD1-201ENST00000334409 CARMIL1Q5VZK9 1371 aa26.44■■□□□ 1.82
PDCD1-201ENST00000334409 KIF21BO75037 1637 aa26.41■■□□□ 1.82
PDCD1-201ENST00000334409 GOLGA3Q08378 1498 aa26.41■■□□□ 1.82
PDCD1-201ENST00000334409 SCAF1Q9H7N4 1312 aaKnown RBP26.41■■□□□ 1.82
PDCD1-201ENST00000334409 EIF4G3O43432 1585 aaKnown RBP26.41■■□□□ 1.82
PDCD1-201ENST00000334409 PBRM1Q86U86 1689 aa26.37■■□□□ 1.81
PDCD1-201ENST00000334409 ERICH3Q5RHP9 1530 aa26.36■■□□□ 1.81
PDCD1-201ENST00000334409 GRIN2BQ13224 1484 aa26.35■■□□□ 1.81
PDCD1-201ENST00000334409 RANGAP1P46060 587 aaPredicted RBP26.33■■□□□ 1.81
PDCD1-201ENST00000334409 CUL7Q14999 1698 aa26.28■■□□□ 1.8
PDCD1-201ENST00000334409 SNAPC4Q5SXM2 1469 aa26.27■■□□□ 1.8
PDCD1-201ENST00000334409 TNIKQ9UKE5 1360 aa26.26■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms