RNA–Protein interactions for RNA: ENST00000334271.7

AP1S3-201, Transcript of adaptor related protein complex 1 subunit sigma 3, humanhuman

TSL 2

Gene AP1S3, Length 2,201 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3-201ENST00000334271 NISCHQ9Y2I1 1504 aa23.66■■□□□ 1.38
AP1S3-201ENST00000334271 CCDC180Q9P1Z9 1646 aa20.85■□□□□ 0.93
AP1S3-201ENST00000334271 ZCCHC6Q5VYS8 1495 aaKnown RBP19.89■□□□□ 0.78
AP1S3-201ENST00000334271 DCAF1Q9Y4B6 1507 aa19.79■□□□□ 0.76
AP1S3-201ENST00000334271 MYO15BQ96JP2 1530 aa19.63■□□□□ 0.73
AP1S3-201ENST00000334271 SLC24A1O60721 1099 aa19.55■□□□□ 0.72
AP1S3-201ENST00000334271 NACADO15069 1562 aa19.38■□□□□ 0.69
AP1S3-201ENST00000334271 ABCC9O60706 1549 aa19.33■□□□□ 0.68
AP1S3-201ENST00000334271 RB1CC1Q8TDY2 1594 aa19.17■□□□□ 0.66
AP1S3-201ENST00000334271 DCAF8L2P0C7V8 631 aa19.14■□□□□ 0.65
AP1S3-201ENST00000334271 SHROOM4Q9ULL8 1493 aa18.84■□□□□ 0.61
AP1S3-201ENST00000334271 SCRIBQ14160 1630 aa18.82■□□□□ 0.6
AP1S3-201ENST00000334271 UNC13AQ9UPW8 1703 aa18.66■□□□□ 0.58
AP1S3-201ENST00000334271 BICRAQ9NZM4 1560 aa18.46■□□□□ 0.55
AP1S3-201ENST00000334271 BAZ1AQ9NRL2 1556 aaPredicted RBP18.34■□□□□ 0.53
AP1S3-201ENST00000334271 RSF1Q96T23 1441 aaPredicted RBP18.26■□□□□ 0.51
AP1S3-201ENST00000334271 SMARCA4P51532 1647 aa18.2■□□□□ 0.5
AP1S3-201ENST00000334271 CECR2Q9BXF3 1484 aa18.19■□□□□ 0.5
AP1S3-201ENST00000334271 SUPT5HO00267 1087 aaKnown RBP18.16■□□□□ 0.5
AP1S3-201ENST00000334271 MROH2BQ7Z745 1585 aa18.16■□□□□ 0.5
AP1S3-201ENST00000334271 PEG3Q9GZU2 1588 aa18.12■□□□□ 0.49
AP1S3-201ENST00000334271 PABPN1Q86U42 306 aaKnown RBP eCLIP18.1■□□□□ 0.49
AP1S3-201ENST00000334271 MYT1Q01538 1121 aa18.07■□□□□ 0.48
AP1S3-201ENST00000334271 DAXXQ9UER7 740 aaPredicted RBP18■□□□□ 0.47
AP1S3-201ENST00000334271 SMARCA2P51531 1590 aa17.99■□□□□ 0.47
AP1S3-201ENST00000334271 WIZO95785 1651 aa17.99■□□□□ 0.47
AP1S3-201ENST00000334271 TOP2AP11388 1531 aaKnown RBP17.97■□□□□ 0.47
AP1S3-201ENST00000334271 TTBK1Q5TCY1 1321 aaPredicted RBP17.94■□□□□ 0.46
AP1S3-201ENST00000334271 EIF4G1Q04637 1599 aaKnown RBP17.92■□□□□ 0.46
AP1S3-201ENST00000334271 ATAD2BQ9ULI0 1458 aa17.88■□□□□ 0.45
AP1S3-201ENST00000334271 HMGXB3Q12766 1538 aa17.85■□□□□ 0.45
AP1S3-201ENST00000334271 NCAPD3P42695 1498 aa17.82■□□□□ 0.44
AP1S3-201ENST00000334271 BAZ1BQ9UIG0 1483 aaKnown RBP17.77■□□□□ 0.44
AP1S3-201ENST00000334271 PELP1Q8IZL8 1130 aaKnown RBP17.76■□□□□ 0.43
AP1S3-201ENST00000334271 CCDC88BA6NC98 1476 aa17.66■□□□□ 0.42
AP1S3-201ENST00000334271 CC2D2AQ9P2K1 1620 aa17.63■□□□□ 0.41
AP1S3-201ENST00000334271 APLP2Q06481 763 aa17.58■□□□□ 0.4
AP1S3-201ENST00000334271 PRKCSHP14314 528 aaPredicted RBP17.57■□□□□ 0.4
AP1S3-201ENST00000334271 CHIC1Q5VXU3 224 aa17.53■□□□□ 0.4
AP1S3-201ENST00000334271 EHMT2Q96KQ7 1210 aa17.52■□□□□ 0.39
AP1S3-201ENST00000334271 ERICH6Q7L0X2 663 aa17.43■□□□□ 0.38
AP1S3-201ENST00000334271 PRDM2Q13029 1718 aa17.42■□□□□ 0.38
AP1S3-201ENST00000334271 CFTRP13569 1480 aa17.38■□□□□ 0.37
AP1S3-201ENST00000334271 NCBP3Q53F19 620 aaKnown RBP17.36■□□□□ 0.37
AP1S3-201ENST00000334271 PLPPR3Q6T4P5 718 aa17.31■□□□□ 0.36
AP1S3-201ENST00000334271 CADPSQ9ULU8 1353 aa17.29■□□□□ 0.36
AP1S3-201ENST00000334271 TRIM41Q8WV44 630 aa17.26■□□□□ 0.35
AP1S3-201ENST00000334271 LAMC3Q9Y6N6 1575 aa17.26■□□□□ 0.35
AP1S3-201ENST00000334271 RTN4Q9NQC3 1192 aaKnown RBP17.25■□□□□ 0.35
AP1S3-201ENST00000334271 WRNQ14191 1432 aaPredicted RBP eCLIP17.21■□□□□ 0.35
AP1S3-201ENST00000334271 BIVM-ERCC5R4GMW8 1640 aa17.18■□□□□ 0.34
AP1S3-201ENST00000334271 TOP2BQ02880 1626 aa17.16■□□□□ 0.34
AP1S3-201ENST00000334271 ABCC8Q09428 1581 aa17.15■□□□□ 0.34
AP1S3-201ENST00000334271 EEA1Q15075 1411 aa17.15■□□□□ 0.34
AP1S3-201ENST00000334271 SYNJ1O43426 1573 aa17.08■□□□□ 0.33
AP1S3-201ENST00000334271 PDS5BQ9NTI5 1447 aa17.07■□□□□ 0.32
AP1S3-201ENST00000334271 FANCD2Q9BXW9 1451 aa17.05■□□□□ 0.32
AP1S3-201ENST00000334271 CUX1P39880 1505 aa17.01■□□□□ 0.31
AP1S3-201ENST00000334271 DNMBPQ6XZF7 1577 aa16.99■□□□□ 0.31
AP1S3-201ENST00000334271 CEP164Q9UPV0 1460 aa16.99■□□□□ 0.31
AP1S3-201ENST00000334271 NESP48681 1621 aa16.93■□□□□ 0.3
AP1S3-201ENST00000334271 DNAJC5BQ9UF47 199 aa16.93■□□□□ 0.3
AP1S3-201ENST00000334271 TOPBP1Q92547 1522 aa16.88■□□□□ 0.29
AP1S3-201ENST00000334271 KIF21AQ7Z4S6 1674 aa16.87■□□□□ 0.29
AP1S3-201ENST00000334271 KIF21BO75037 1637 aa16.85■□□□□ 0.29
AP1S3-201ENST00000334271 SOGA1O94964 1423 aa16.84■□□□□ 0.29
AP1S3-201ENST00000334271 KIF27Q86VH2 1401 aa16.84■□□□□ 0.29
AP1S3-201ENST00000334271 FGD5Q6ZNL6 1462 aa16.83■□□□□ 0.28
AP1S3-201ENST00000334271 MRC2Q9UBG0 1479 aa16.82■□□□□ 0.28
AP1S3-201ENST00000334271 CSRNP3Q8WYN3 585 aa16.82■□□□□ 0.28
AP1S3-201ENST00000334271 URB2Q14146 1524 aaKnown RBP16.81■□□□□ 0.28
AP1S3-201ENST00000334271 ARXQ96QS3 562 aa16.8■□□□□ 0.28
AP1S3-201ENST00000334271 ABCA10Q8WWZ4 1543 aa16.8■□□□□ 0.28
AP1S3-201ENST00000334271 WDR97A6NE52 1622 aa16.79■□□□□ 0.28
AP1S3-201ENST00000334271 ERICH3Q5RHP9 1530 aa16.77■□□□□ 0.28
AP1S3-201ENST00000334271 AMER1Q5JTC6 1135 aaPredicted RBP16.77■□□□□ 0.28
AP1S3-201ENST00000334271 WDR62O43379 1518 aa16.77■□□□□ 0.27
AP1S3-201ENST00000334271 POLA1P09884 1462 aaPredicted RBP16.77■□□□□ 0.27
AP1S3-201ENST00000334271 GOLGA3Q08378 1498 aa16.76■□□□□ 0.27
AP1S3-201ENST00000334271 RUSC2Q8N2Y8 1516 aa16.72■□□□□ 0.27
AP1S3-201ENST00000334271 TNIKQ9UKE5 1360 aa16.71■□□□□ 0.27
AP1S3-201ENST00000334271 PRXQ9BXM0 1461 aa16.71■□□□□ 0.27
AP1S3-201ENST00000334271 CUX2O14529 1486 aa16.69■□□□□ 0.26
AP1S3-201ENST00000334271 FAM9AQ8IZU1 332 aaPredicted RBP16.68■□□□□ 0.26
AP1S3-201ENST00000334271 ERCC6Q03468 1493 aa16.67■□□□□ 0.26
AP1S3-201ENST00000334271 THOC2Q8NI27 1593 aaKnown RBP16.67■□□□□ 0.26
AP1S3-201ENST00000334271 TARBP1Q13395 1621 aaKnown RBP16.67■□□□□ 0.26
AP1S3-201ENST00000334271 CUL7Q14999 1698 aa16.67■□□□□ 0.26
AP1S3-201ENST00000334271 LOC105371045A0A1W2PR82 267 aa16.66■□□□□ 0.26
AP1S3-201ENST00000334271 ABCA5Q8WWZ7 1642 aa16.65■□□□□ 0.26
AP1S3-201ENST00000334271 IFT140Q96RY7 1462 aa16.65■□□□□ 0.26
AP1S3-201ENST00000334271 IGF1RP08069 1367 aa16.61■□□□□ 0.25
AP1S3-201ENST00000334271 RAD54L2Q9Y4B4 1467 aa16.59■□□□□ 0.25
AP1S3-201ENST00000334271 TIMELESSQ9UNS1 1208 aa16.58■□□□□ 0.25
AP1S3-201ENST00000334271 RAPGEF2Q9Y4G8 1499 aa16.57■□□□□ 0.24
AP1S3-201ENST00000334271 GAPVD1Q14C86 1478 aa16.56■□□□□ 0.24
AP1S3-201ENST00000334271 CARMIL1Q5VZK9 1371 aa16.54■□□□□ 0.24
AP1S3-201ENST00000334271 CEP162Q5TB80 1403 aa16.51■□□□□ 0.23
AP1S3-201ENST00000334271 PBRM1Q86U86 1689 aa16.51■□□□□ 0.23
AP1S3-201ENST00000334271 EIF5BO60841 1220 aaKnown RBP16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms