RNA–Protein interactions for RNA: ENST00000331163.10

PDGFB-201, Transcript of platelet derived growth factor subunit B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFB, Length 3,497 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFB-201ENST00000331163 NISCHQ9Y2I1 1504 aa33.27■■■□□ 2.92
PDGFB-201ENST00000331163 DCAF8L2P0C7V8 631 aa30.4■■■□□ 2.46
PDGFB-201ENST00000331163 SHROOM4Q9ULL8 1493 aa29.34■■■□□ 2.29
PDGFB-201ENST00000331163 ABCC9O60706 1549 aa28.59■■■□□ 2.17
PDGFB-201ENST00000331163 SUPT5HO00267 1087 aaKnown RBP28.5■■■□□ 2.15
PDGFB-201ENST00000331163 CCDC180Q9P1Z9 1646 aa28.05■■■□□ 2.08
PDGFB-201ENST00000331163 ZCCHC6Q5VYS8 1495 aaKnown RBP27.7■■■□□ 2.03
PDGFB-201ENST00000331163 PABPN1Q86U42 306 aaKnown RBP eCLIP27.65■■■□□ 2.02
PDGFB-201ENST00000331163 SCRIBQ14160 1630 aa27.26■■□□□ 1.95
PDGFB-201ENST00000331163 EHMT2Q96KQ7 1210 aa27.02■■□□□ 1.92
PDGFB-201ENST00000331163 RB1CC1Q8TDY2 1594 aa26.72■■□□□ 1.87
PDGFB-201ENST00000331163 NACADO15069 1562 aa26.68■■□□□ 1.86
PDGFB-201ENST00000331163 FAM9AQ8IZU1 332 aaPredicted RBP26.66■■□□□ 1.86
PDGFB-201ENST00000331163 DCAF1Q9Y4B6 1507 aa26.6■■□□□ 1.85
PDGFB-201ENST00000331163 CECR2Q9BXF3 1484 aa26.45■■□□□ 1.82
PDGFB-201ENST00000331163 TRIM41Q8WV44 630 aa26.28■■□□□ 1.8
PDGFB-201ENST00000331163 CHIC1Q5VXU3 224 aa26.24■■□□□ 1.79
PDGFB-201ENST00000331163 RSF1Q96T23 1441 aaPredicted RBP26.2■■□□□ 1.78
PDGFB-201ENST00000331163 MYO15BQ96JP2 1530 aa26.11■■□□□ 1.77
PDGFB-201ENST00000331163 MROH2BQ7Z745 1585 aa26.02■■□□□ 1.76
PDGFB-201ENST00000331163 RANGAP1P46060 587 aaPredicted RBP26■■□□□ 1.75
PDGFB-201ENST00000331163 LOC105371045A0A1W2PR82 267 aa25.99■■□□□ 1.75
PDGFB-201ENST00000331163 TTBK1Q5TCY1 1321 aaPredicted RBP25.75■■□□□ 1.71
PDGFB-201ENST00000331163 WIZO95785 1651 aa25.74■■□□□ 1.71
PDGFB-201ENST00000331163 BAZ1AQ9NRL2 1556 aaPredicted RBP25.68■■□□□ 1.7
PDGFB-201ENST00000331163 BICRAQ9NZM4 1560 aa25.61■■□□□ 1.69
PDGFB-201ENST00000331163 UNC13AQ9UPW8 1703 aa25.57■■□□□ 1.68
PDGFB-201ENST00000331163 PPARGC1BQ86YN6 1023 aaKnown RBP25.56■■□□□ 1.68
PDGFB-201ENST00000331163 BAZ1BQ9UIG0 1483 aaKnown RBP25.53■■□□□ 1.68
PDGFB-201ENST00000331163 UBTFP17480 764 aaKnown RBP25.53■■□□□ 1.68
PDGFB-201ENST00000331163 DNAJC5BQ9UF47 199 aa25.52■■□□□ 1.68
PDGFB-201ENST00000331163 SMARCA4P51532 1647 aa25.43■■□□□ 1.66
PDGFB-201ENST00000331163 CCDC88BA6NC98 1476 aa25.38■■□□□ 1.65
PDGFB-201ENST00000331163 ATAD2BQ9ULI0 1458 aa25.36■■□□□ 1.65
PDGFB-201ENST00000331163 EIF4G1Q04637 1599 aaKnown RBP25.24■■□□□ 1.63
PDGFB-201ENST00000331163 ABCC8Q09428 1581 aa25.16■■□□□ 1.62
PDGFB-201ENST00000331163 ATP1B4Q9UN42 357 aaPredicted RBP25.15■■□□□ 1.62
PDGFB-201ENST00000331163 PCGF6Q9BYE7 350 aa25.13■■□□□ 1.61
PDGFB-201ENST00000331163 TOP2AP11388 1531 aaKnown RBP25.11■■□□□ 1.61
PDGFB-201ENST00000331163 SMARCA2P51531 1590 aa25.09■■□□□ 1.61
PDGFB-201ENST00000331163 HRCP23327 699 aa25■■□□□ 1.59
PDGFB-201ENST00000331163 CSRNP3Q8WYN3 585 aa24.97■■□□□ 1.59
PDGFB-201ENST00000331163 CC2D2AQ9P2K1 1620 aa24.97■■□□□ 1.59
PDGFB-201ENST00000331163 FBLN2P98095 1184 aa24.95■■□□□ 1.58
PDGFB-201ENST00000331163 WRNQ14191 1432 aaPredicted RBP eCLIP24.94■■□□□ 1.58
PDGFB-201ENST00000331163 SOGA1O94964 1423 aa24.87■■□□□ 1.57
PDGFB-201ENST00000331163 P3H3Q8IVL6 736 aa24.86■■□□□ 1.57
PDGFB-201ENST00000331163 NCAPD3P42695 1498 aa24.86■■□□□ 1.57
PDGFB-201ENST00000331163 APLP2Q06481 763 aa24.84■■□□□ 1.57
PDGFB-201ENST00000331163 NESP48681 1621 aa24.83■■□□□ 1.56
PDGFB-201ENST00000331163 CADPSQ9ULU8 1353 aa24.77■■□□□ 1.56
PDGFB-201ENST00000331163 RUSC2Q8N2Y8 1516 aa24.71■■□□□ 1.55
PDGFB-201ENST00000331163 ARID3CA6NKF2 412 aa24.69■■□□□ 1.54
PDGFB-201ENST00000331163 ERCC6Q03468 1493 aa24.62■■□□□ 1.53
PDGFB-201ENST00000331163 TDRD9Q8NDG6 1382 aaKnown RBP24.55■■□□□ 1.52
PDGFB-201ENST00000331163 FANCD2Q9BXW9 1451 aa24.52■■□□□ 1.52
PDGFB-201ENST00000331163 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.51■■□□□ 1.51
PDGFB-201ENST00000331163 ITGAEP38570 1179 aa24.51■■□□□ 1.51
PDGFB-201ENST00000331163 HNRNPUL2Q1KMD3 747 aaKnown RBP24.51■■□□□ 1.51
PDGFB-201ENST00000331163 CUX2O14529 1486 aa24.46■■□□□ 1.51
PDGFB-201ENST00000331163 HMGXB3Q12766 1538 aa24.45■■□□□ 1.51
PDGFB-201ENST00000331163 PEG3Q9GZU2 1588 aa24.43■■□□□ 1.5
PDGFB-201ENST00000331163 PDS5BQ9NTI5 1447 aa24.41■■□□□ 1.5
PDGFB-201ENST00000331163 CFTRP13569 1480 aa24.41■■□□□ 1.5
PDGFB-201ENST00000331163 RAD54L2Q9Y4B4 1467 aa24.38■■□□□ 1.49
PDGFB-201ENST00000331163 SYNJ1O43426 1573 aa24.36■■□□□ 1.49
PDGFB-201ENST00000331163 KIF27Q86VH2 1401 aa24.33■■□□□ 1.49
PDGFB-201ENST00000331163 CEP164Q9UPV0 1460 aa24.33■■□□□ 1.49
PDGFB-201ENST00000331163 CHMP7Q8WUX9 453 aaPredicted RBP24.29■■□□□ 1.48
PDGFB-201ENST00000331163 TRIM26Q12899 539 aaPredicted RBP24.29■■□□□ 1.48
PDGFB-201ENST00000331163 FGD5Q6ZNL6 1462 aa24.24■■□□□ 1.47
PDGFB-201ENST00000331163 CEP162Q5TB80 1403 aa24.22■■□□□ 1.47
PDGFB-201ENST00000331163 CUX1P39880 1505 aa24.21■■□□□ 1.47
PDGFB-201ENST00000331163 CARMIL1Q5VZK9 1371 aa24.19■■□□□ 1.46
PDGFB-201ENST00000331163 RAPGEF2Q9Y4G8 1499 aa24.18■■□□□ 1.46
PDGFB-201ENST00000331163 CLIP1P30622 1438 aa24.16■■□□□ 1.46
PDGFB-201ENST00000331163 GOLGA3Q08378 1498 aa24.15■■□□□ 1.46
PDGFB-201ENST00000331163 AQRO60306 1485 aaKnown RBP eCLIP24.12■■□□□ 1.45
PDGFB-201ENST00000331163 CCER1Q8TC90 406 aaPredicted RBP24.09■■□□□ 1.45
PDGFB-201ENST00000331163 EEA1Q15075 1411 aa24.09■■□□□ 1.45
PDGFB-201ENST00000331163 FAM50AQ14320 339 aaKnown RBP24.04■■□□□ 1.44
PDGFB-201ENST00000331163 IGF1RP08069 1367 aa24.03■■□□□ 1.44
PDGFB-201ENST00000331163 TNIKQ9UKE5 1360 aa24.03■■□□□ 1.44
PDGFB-201ENST00000331163 TOPBP1Q92547 1522 aa24.02■■□□□ 1.44
PDGFB-201ENST00000331163 POLA1P09884 1462 aaPredicted RBP24■■□□□ 1.43
PDGFB-201ENST00000331163 URB2Q14146 1524 aaKnown RBP23.95■■□□□ 1.42
PDGFB-201ENST00000331163 TOP2BQ02880 1626 aa23.92■■□□□ 1.42
PDGFB-201ENST00000331163 LAMC3Q9Y6N6 1575 aa23.85■■□□□ 1.41
PDGFB-201ENST00000331163 GAPVD1Q14C86 1478 aa23.85■■□□□ 1.41
PDGFB-201ENST00000331163 KANK4Q5T7N3 995 aaPredicted RBP23.85■■□□□ 1.41
PDGFB-201ENST00000331163 MRC2Q9UBG0 1479 aa23.81■■□□□ 1.4
PDGFB-201ENST00000331163 ZNF608Q9ULD9 1512 aaPredicted RBP23.8■■□□□ 1.4
PDGFB-201ENST00000331163 ZNF777Q9ULD5 760 aaPredicted RBP23.8■■□□□ 1.4
PDGFB-201ENST00000331163 FHOD3Q2V2M9 1422 aa23.75■■□□□ 1.39
PDGFB-201ENST00000331163 PELP1Q8IZL8 1130 aaKnown RBP23.75■■□□□ 1.39
PDGFB-201ENST00000331163 DNMBPQ6XZF7 1577 aa23.74■■□□□ 1.39
PDGFB-201ENST00000331163 MYT1LQ9UL68 1186 aa23.74■■□□□ 1.39
PDGFB-201ENST00000331163 KIF21AQ7Z4S6 1674 aa23.71■■□□□ 1.39
PDGFB-201ENST00000331163 SCAF1Q9H7N4 1312 aaKnown RBP23.71■■□□□ 1.39
PDGFB-201ENST00000331163 KCNH8Q96L42 1107 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 275.5 ms