RNA–Protein interactions for RNA: ENST00000319533.9

RPP40-201, Transcript of ribonuclease P/MRP subunit p40, humanhuman

TSL 1 (best) BASIC

Gene RPP40, Length 1,088 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPP40-201ENST00000319533 NISCHQ9Y2I1 1504 aa35.94■■■■□ 3.34
RPP40-201ENST00000319533 ABCC9O60706 1549 aa32.3■■■□□ 2.76
RPP40-201ENST00000319533 CCDC180Q9P1Z9 1646 aa32.29■■■□□ 2.76
RPP40-201ENST00000319533 RB1CC1Q8TDY2 1594 aa30.75■■■□□ 2.51
RPP40-201ENST00000319533 NACADO15069 1562 aa30.55■■■□□ 2.48
RPP40-201ENST00000319533 DNAJC5BQ9UF47 199 aa30.42■■■□□ 2.46
RPP40-201ENST00000319533 DCAF8L2P0C7V8 631 aa30.22■■■□□ 2.43
RPP40-201ENST00000319533 MYO15BQ96JP2 1530 aa30.17■■■□□ 2.42
RPP40-201ENST00000319533 PABPN1Q86U42 306 aaKnown RBP eCLIP30.04■■■□□ 2.4
RPP40-201ENST00000319533 UNC13AQ9UPW8 1703 aa30.03■■■□□ 2.4
RPP40-201ENST00000319533 BICRAQ9NZM4 1560 aa29.89■■■□□ 2.38
RPP40-201ENST00000319533 ZCCHC6Q5VYS8 1495 aaKnown RBP29.77■■■□□ 2.36
RPP40-201ENST00000319533 DCAF1Q9Y4B6 1507 aa29.74■■■□□ 2.35
RPP40-201ENST00000319533 SHROOM4Q9ULL8 1493 aa29.53■■■□□ 2.32
RPP40-201ENST00000319533 AEBP2Q6ZN18 517 aaPredicted RBP29.33■■■□□ 2.29
RPP40-201ENST00000319533 SCRIBQ14160 1630 aa29.33■■■□□ 2.29
RPP40-201ENST00000319533 CC2D2AQ9P2K1 1620 aa29.2■■■□□ 2.26
RPP40-201ENST00000319533 EIF4G1Q04637 1599 aaKnown RBP29.13■■■□□ 2.25
RPP40-201ENST00000319533 CECR2Q9BXF3 1484 aa29.13■■■□□ 2.25
RPP40-201ENST00000319533 CHIC1Q5VXU3 224 aa28.47■■■□□ 2.15
RPP40-201ENST00000319533 NCAPD3P42695 1498 aa28.23■■■□□ 2.11
RPP40-201ENST00000319533 ATAD2BQ9ULI0 1458 aa28.1■■■□□ 2.09
RPP40-201ENST00000319533 SMARCA4P51532 1647 aa28.03■■■□□ 2.08
RPP40-201ENST00000319533 DNAJC5Q9H3Z4 198 aa28.01■■■□□ 2.07
RPP40-201ENST00000319533 SMARCA2P51531 1590 aa28.01■■■□□ 2.07
RPP40-201ENST00000319533 HMGXB3Q12766 1538 aa27.99■■■□□ 2.07
RPP40-201ENST00000319533 CUX2O14529 1486 aa27.94■■■□□ 2.06
RPP40-201ENST00000319533 BAZ1AQ9NRL2 1556 aaPredicted RBP27.89■■■□□ 2.05
RPP40-201ENST00000319533 ERCC6Q03468 1493 aa27.88■■■□□ 2.05
RPP40-201ENST00000319533 PEG3Q9GZU2 1588 aa27.82■■■□□ 2.04
RPP40-201ENST00000319533 BAZ1BQ9UIG0 1483 aaKnown RBP27.78■■■□□ 2.04
RPP40-201ENST00000319533 NESP48681 1621 aa27.73■■■□□ 2.03
RPP40-201ENST00000319533 MROH2BQ7Z745 1585 aa27.67■■■□□ 2.02
RPP40-201ENST00000319533 LAMC3Q9Y6N6 1575 aa27.57■■■□□ 2
RPP40-201ENST00000319533 THOC2Q8NI27 1593 aaKnown RBP27.5■■□□□ 1.99
RPP40-201ENST00000319533 PDS5BQ9NTI5 1447 aa27.41■■□□□ 1.98
RPP40-201ENST00000319533 KIF21AQ7Z4S6 1674 aa27.36■■□□□ 1.97
RPP40-201ENST00000319533 CADPSQ9ULU8 1353 aa27.34■■□□□ 1.97
RPP40-201ENST00000319533 WIZO95785 1651 aa27.3■■□□□ 1.96
RPP40-201ENST00000319533 MRC2Q9UBG0 1479 aa27.17■■□□□ 1.94
RPP40-201ENST00000319533 WDR62O43379 1518 aa27.12■■□□□ 1.93
RPP40-201ENST00000319533 RSF1Q96T23 1441 aaPredicted RBP27.08■■□□□ 1.93
RPP40-201ENST00000319533 CFTRP13569 1480 aa27.03■■□□□ 1.92
RPP40-201ENST00000319533 CEP164Q9UPV0 1460 aa27.03■■□□□ 1.92
RPP40-201ENST00000319533 FANCD2Q9BXW9 1451 aa27■■□□□ 1.91
RPP40-201ENST00000319533 TOP2AP11388 1531 aaKnown RBP26.99■■□□□ 1.91
RPP40-201ENST00000319533 URB2Q14146 1524 aaKnown RBP26.8■■□□□ 1.88
RPP40-201ENST00000319533 PRDM2Q13029 1718 aa26.69■■□□□ 1.86
RPP40-201ENST00000319533 CCDC88BA6NC98 1476 aa26.68■■□□□ 1.86
RPP40-201ENST00000319533 TRIM41Q8WV44 630 aa26.63■■□□□ 1.85
RPP40-201ENST00000319533 OSCARQ8IYS5 282 aa26.61■■□□□ 1.85
RPP40-201ENST00000319533 IFT140Q96RY7 1462 aa26.52■■□□□ 1.84
RPP40-201ENST00000319533 TOPBP1Q92547 1522 aa26.49■■□□□ 1.83
RPP40-201ENST00000319533 ZNF608Q9ULD9 1512 aaPredicted RBP26.46■■□□□ 1.83
RPP40-201ENST00000319533 ABCC8Q09428 1581 aa26.46■■□□□ 1.83
RPP40-201ENST00000319533 DNMBPQ6XZF7 1577 aa26.38■■□□□ 1.81
RPP40-201ENST00000319533 EIF4G3O43432 1585 aaKnown RBP26.3■■□□□ 1.8
RPP40-201ENST00000319533 TARBP1Q13395 1621 aaKnown RBP26.28■■□□□ 1.8
RPP40-201ENST00000319533 RIMBP3CA6NJZ7 1639 aa26.26■■□□□ 1.79
RPP40-201ENST00000319533 RIMBP3BA6NNM3 1639 aa26.26■■□□□ 1.79
RPP40-201ENST00000319533 RIMBP3Q9UFD9 1639 aa26.26■■□□□ 1.79
RPP40-201ENST00000319533 POLA1P09884 1462 aaPredicted RBP26.22■■□□□ 1.79
RPP40-201ENST00000319533 AQRO60306 1485 aaKnown RBP eCLIP26.2■■□□□ 1.78
RPP40-201ENST00000319533 ARHGEF11O15085 1522 aa26.19■■□□□ 1.78
RPP40-201ENST00000319533 CHD1O14646 1710 aa26.09■■□□□ 1.77
RPP40-201ENST00000319533 RAD54L2Q9Y4B4 1467 aa26.09■■□□□ 1.77
RPP40-201ENST00000319533 SOGA1O94964 1423 aa26.08■■□□□ 1.77
RPP40-201ENST00000319533 WDR97A6NE52 1622 aa26.03■■□□□ 1.76
RPP40-201ENST00000319533 TDRD9Q8NDG6 1382 aaKnown RBP26.03■■□□□ 1.76
RPP40-201ENST00000319533 FGD5Q6ZNL6 1462 aa26.02■■□□□ 1.76
RPP40-201ENST00000319533 CUX1P39880 1505 aa25.99■■□□□ 1.75
RPP40-201ENST00000319533 FBLN2P98095 1184 aa25.98■■□□□ 1.75
RPP40-201ENST00000319533 CYB5RLQ6IPT4 315 aa25.96■■□□□ 1.75
RPP40-201ENST00000319533 SNAPC4Q5SXM2 1469 aa25.93■■□□□ 1.74
RPP40-201ENST00000319533 ARAP1Q96P48 1450 aa25.93■■□□□ 1.74
RPP40-201ENST00000319533 MAGI1Q96QZ7 1491 aaPredicted RBP25.9■■□□□ 1.74
RPP40-201ENST00000319533 GRIN2BQ13224 1484 aa25.88■■□□□ 1.73
RPP40-201ENST00000319533 CLASP1Q7Z460 1538 aa25.86■■□□□ 1.73
RPP40-201ENST00000319533 CHMP7Q8WUX9 453 aaPredicted RBP25.83■■□□□ 1.73
RPP40-201ENST00000319533 SYNJ2O15056 1496 aa25.81■■□□□ 1.72
RPP40-201ENST00000319533 SYNJ1O43426 1573 aa25.81■■□□□ 1.72
RPP40-201ENST00000319533 GAPVD1Q14C86 1478 aa25.76■■□□□ 1.71
RPP40-201ENST00000319533 ABCA10Q8WWZ4 1543 aa25.76■■□□□ 1.71
RPP40-201ENST00000319533 PBRM1Q86U86 1689 aa25.72■■□□□ 1.71
RPP40-201ENST00000319533 ABCA5Q8WWZ7 1642 aa25.71■■□□□ 1.71
RPP40-201ENST00000319533 SUPT5HO00267 1087 aaKnown RBP25.71■■□□□ 1.71
RPP40-201ENST00000319533 TRHP20396 242 aaPredicted RBP25.65■■□□□ 1.7
RPP40-201ENST00000319533 WRNQ14191 1432 aaPredicted RBP eCLIP25.62■■□□□ 1.69
RPP40-201ENST00000319533 TOP2BQ02880 1626 aa25.57■■□□□ 1.68
RPP40-201ENST00000319533 BIVM-ERCC5R4GMW8 1640 aa25.57■■□□□ 1.68
RPP40-201ENST00000319533 GRIN2AQ12879 1464 aa25.54■■□□□ 1.68
RPP40-201ENST00000319533 ADAMTS12P58397 1594 aa25.51■■□□□ 1.67
RPP40-201ENST00000319533 NUP160Q12769 1436 aa25.49■■□□□ 1.67
RPP40-201ENST00000319533 FHAD1B1AJZ9 1412 aa25.46■■□□□ 1.67
RPP40-201ENST00000319533 CEP170Q5SW79 1584 aa25.44■■□□□ 1.66
RPP40-201ENST00000319533 ERICH3Q5RHP9 1530 aa25.43■■□□□ 1.66
RPP40-201ENST00000319533 ERCC6L2Q5T890 1561 aa25.41■■□□□ 1.66
RPP40-201ENST00000319533 SHROOM2Q13796 1616 aa25.38■■□□□ 1.65
RPP40-201ENST00000319533 PRG4Q92954 1404 aaPredicted RBP25.2■■□□□ 1.63
RPP40-201ENST00000319533 JPH4Q96JJ6 628 aa25.2■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms