RNA–Protein interactions for RNA: ENST00000318024.8

USH1C-202, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USH1C, Length 2,237 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-202ENST00000318024 NISCHQ9Y2I1 1504 aa34.85■■■■□ 3.17
USH1C-202ENST00000318024 CCDC180Q9P1Z9 1646 aa30.18■■■□□ 2.42
USH1C-202ENST00000318024 ZCCHC6Q5VYS8 1495 aaKnown RBP29.24■■■□□ 2.27
USH1C-202ENST00000318024 DCAF8L2P0C7V8 631 aa29.2■■■□□ 2.26
USH1C-202ENST00000318024 ABCC9O60706 1549 aa28.9■■■□□ 2.22
USH1C-202ENST00000318024 SHROOM4Q9ULL8 1493 aa28.79■■■□□ 2.2
USH1C-202ENST00000318024 DCAF1Q9Y4B6 1507 aa28.65■■■□□ 2.18
USH1C-202ENST00000318024 MYO15BQ96JP2 1530 aa28.28■■■□□ 2.12
USH1C-202ENST00000318024 NACADO15069 1562 aa28.19■■■□□ 2.1
USH1C-202ENST00000318024 SCRIBQ14160 1630 aa28.03■■■□□ 2.08
USH1C-202ENST00000318024 RB1CC1Q8TDY2 1594 aa27.98■■■□□ 2.07
USH1C-202ENST00000318024 SUPT5HO00267 1087 aaKnown RBP27.72■■■□□ 2.03
USH1C-202ENST00000318024 UNC13AQ9UPW8 1703 aa27.42■■□□□ 1.98
USH1C-202ENST00000318024 PABPN1Q86U42 306 aaKnown RBP eCLIP27.4■■□□□ 1.98
USH1C-202ENST00000318024 CECR2Q9BXF3 1484 aa27.22■■□□□ 1.95
USH1C-202ENST00000318024 BICRAQ9NZM4 1560 aa27.2■■□□□ 1.94
USH1C-202ENST00000318024 RSF1Q96T23 1441 aaPredicted RBP27.13■■□□□ 1.93
USH1C-202ENST00000318024 MROH2BQ7Z745 1585 aa27.01■■□□□ 1.91
USH1C-202ENST00000318024 BAZ1AQ9NRL2 1556 aaPredicted RBP26.87■■□□□ 1.89
USH1C-202ENST00000318024 WIZO95785 1651 aa26.77■■□□□ 1.88
USH1C-202ENST00000318024 SMARCA4P51532 1647 aa26.76■■□□□ 1.87
USH1C-202ENST00000318024 CHIC1Q5VXU3 224 aa26.42■■□□□ 1.82
USH1C-202ENST00000318024 EIF4G1Q04637 1599 aaKnown RBP26.39■■□□□ 1.82
USH1C-202ENST00000318024 TOP2AP11388 1531 aaKnown RBP26.39■■□□□ 1.81
USH1C-202ENST00000318024 ATAD2BQ9ULI0 1458 aa26.38■■□□□ 1.81
USH1C-202ENST00000318024 PEG3Q9GZU2 1588 aa26.34■■□□□ 1.81
USH1C-202ENST00000318024 HRCP23327 699 aa26.34■■□□□ 1.81
USH1C-202ENST00000318024 SMARCA2P51531 1590 aa26.27■■□□□ 1.8
USH1C-202ENST00000318024 CCDC88BA6NC98 1476 aa26.25■■□□□ 1.79
USH1C-202ENST00000318024 BAZ1BQ9UIG0 1483 aaKnown RBP26.24■■□□□ 1.79
USH1C-202ENST00000318024 NCAPD3P42695 1498 aa26.1■■□□□ 1.77
USH1C-202ENST00000318024 CC2D2AQ9P2K1 1620 aa26.02■■□□□ 1.76
USH1C-202ENST00000318024 HMGXB3Q12766 1538 aa25.98■■□□□ 1.75
USH1C-202ENST00000318024 TRIM41Q8WV44 630 aa25.95■■□□□ 1.75
USH1C-202ENST00000318024 PCGF6Q9BYE7 350 aa25.85■■□□□ 1.73
USH1C-202ENST00000318024 ABCC8Q09428 1581 aa25.75■■□□□ 1.71
USH1C-202ENST00000318024 DNAJC5BQ9UF47 199 aa25.68■■□□□ 1.7
USH1C-202ENST00000318024 PPARGC1BQ86YN6 1023 aaKnown RBP25.64■■□□□ 1.7
USH1C-202ENST00000318024 FAM9AQ8IZU1 332 aaPredicted RBP25.64■■□□□ 1.7
USH1C-202ENST00000318024 LOC105371045A0A1W2PR82 267 aa25.56■■□□□ 1.68
USH1C-202ENST00000318024 CFTRP13569 1480 aa25.55■■□□□ 1.68
USH1C-202ENST00000318024 WRNQ14191 1432 aaPredicted RBP eCLIP25.52■■□□□ 1.68
USH1C-202ENST00000318024 CADPSQ9ULU8 1353 aa25.51■■□□□ 1.67
USH1C-202ENST00000318024 EHMT2Q96KQ7 1210 aa25.42■■□□□ 1.66
USH1C-202ENST00000318024 SYNJ1O43426 1573 aa25.39■■□□□ 1.66
USH1C-202ENST00000318024 NESP48681 1621 aa25.38■■□□□ 1.65
USH1C-202ENST00000318024 SOGA1O94964 1423 aa25.31■■□□□ 1.64
USH1C-202ENST00000318024 TRIM26Q12899 539 aaPredicted RBP25.31■■□□□ 1.64
USH1C-202ENST00000318024 RUSC2Q8N2Y8 1516 aa25.23■■□□□ 1.63
USH1C-202ENST00000318024 FANCD2Q9BXW9 1451 aa25.23■■□□□ 1.63
USH1C-202ENST00000318024 CUX1P39880 1505 aa25.22■■□□□ 1.63
USH1C-202ENST00000318024 TOP2BQ02880 1626 aa25.21■■□□□ 1.63
USH1C-202ENST00000318024 PRDM2Q13029 1718 aa25.21■■□□□ 1.63
USH1C-202ENST00000318024 LAMC3Q9Y6N6 1575 aa25.15■■□□□ 1.62
USH1C-202ENST00000318024 BIVM-ERCC5R4GMW8 1640 aa25.12■■□□□ 1.61
USH1C-202ENST00000318024 CSRNP3Q8WYN3 585 aa25.11■■□□□ 1.61
USH1C-202ENST00000318024 PDS5BQ9NTI5 1447 aa25.06■■□□□ 1.6
USH1C-202ENST00000318024 EEA1Q15075 1411 aa25.03■■□□□ 1.6
USH1C-202ENST00000318024 CEP164Q9UPV0 1460 aa25.03■■□□□ 1.6
USH1C-202ENST00000318024 ZEB1P37275 1124 aaPredicted RBP24.97■■□□□ 1.59
USH1C-202ENST00000318024 FGD5Q6ZNL6 1462 aa24.96■■□□□ 1.59
USH1C-202ENST00000318024 TOPBP1Q92547 1522 aa24.93■■□□□ 1.58
USH1C-202ENST00000318024 KIF21AQ7Z4S6 1674 aa24.92■■□□□ 1.58
USH1C-202ENST00000318024 URB2Q14146 1524 aaKnown RBP24.91■■□□□ 1.58
USH1C-202ENST00000318024 DNMBPQ6XZF7 1577 aa24.9■■□□□ 1.58
USH1C-202ENST00000318024 UBTFP17480 764 aaKnown RBP24.89■■□□□ 1.57
USH1C-202ENST00000318024 KIF27Q86VH2 1401 aa24.86■■□□□ 1.57
USH1C-202ENST00000318024 RAD54L2Q9Y4B4 1467 aa24.85■■□□□ 1.57
USH1C-202ENST00000318024 CUX2O14529 1486 aa24.84■■□□□ 1.57
USH1C-202ENST00000318024 POLA1P09884 1462 aaPredicted RBP24.84■■□□□ 1.57
USH1C-202ENST00000318024 GOLGA3Q08378 1498 aa24.78■■□□□ 1.56
USH1C-202ENST00000318024 RAPGEF2Q9Y4G8 1499 aa24.75■■□□□ 1.55
USH1C-202ENST00000318024 ERCC6Q03468 1493 aa24.73■■□□□ 1.55
USH1C-202ENST00000318024 TNIKQ9UKE5 1360 aa24.72■■□□□ 1.55
USH1C-202ENST00000318024 MRC2Q9UBG0 1479 aa24.71■■□□□ 1.55
USH1C-202ENST00000318024 IGF1RP08069 1367 aa24.7■■□□□ 1.54
USH1C-202ENST00000318024 KIF21BO75037 1637 aa24.7■■□□□ 1.54
USH1C-202ENST00000318024 ABCA10Q8WWZ4 1543 aa24.67■■□□□ 1.54
USH1C-202ENST00000318024 PRXQ9BXM0 1461 aa24.67■■□□□ 1.54
USH1C-202ENST00000318024 RANGAP1P46060 587 aaPredicted RBP24.66■■□□□ 1.54
USH1C-202ENST00000318024 PELP1Q8IZL8 1130 aaKnown RBP24.65■■□□□ 1.54
USH1C-202ENST00000318024 TDRD9Q8NDG6 1382 aaKnown RBP24.65■■□□□ 1.54
USH1C-202ENST00000318024 CEP162Q5TB80 1403 aa24.65■■□□□ 1.54
USH1C-202ENST00000318024 SCAF1Q9H7N4 1312 aaKnown RBP24.59■■□□□ 1.53
USH1C-202ENST00000318024 CARMIL1Q5VZK9 1371 aa24.57■■□□□ 1.52
USH1C-202ENST00000318024 WDR62O43379 1518 aa24.53■■□□□ 1.52
USH1C-202ENST00000318024 ERICH3Q5RHP9 1530 aa24.53■■□□□ 1.52
USH1C-202ENST00000318024 TARBP1Q13395 1621 aaKnown RBP24.5■■□□□ 1.51
USH1C-202ENST00000318024 WDR97A6NE52 1622 aa24.49■■□□□ 1.51
USH1C-202ENST00000318024 GAPVD1Q14C86 1478 aa24.48■■□□□ 1.51
USH1C-202ENST00000318024 AQRO60306 1485 aaKnown RBP eCLIP24.47■■□□□ 1.51
USH1C-202ENST00000318024 CLIP1P30622 1438 aa24.45■■□□□ 1.5
USH1C-202ENST00000318024 THOC2Q8NI27 1593 aaKnown RBP24.45■■□□□ 1.5
USH1C-202ENST00000318024 ABCA5Q8WWZ7 1642 aa24.42■■□□□ 1.5
USH1C-202ENST00000318024 ZNF608Q9ULD9 1512 aaPredicted RBP24.41■■□□□ 1.5
USH1C-202ENST00000318024 IFT140Q96RY7 1462 aa24.4■■□□□ 1.5
USH1C-202ENST00000318024 CUL7Q14999 1698 aa24.3■■□□□ 1.48
USH1C-202ENST00000318024 TTBK1Q5TCY1 1321 aaPredicted RBP24.28■■□□□ 1.48
USH1C-202ENST00000318024 GRIN2BQ13224 1484 aa24.25■■□□□ 1.47
USH1C-202ENST00000318024 PBRM1Q86U86 1689 aa24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms