RNA–Protein interactions for RNA: ENST00000310645.9

COL6A2-202, Transcript of collagen type VI alpha 2 chain, humanhuman

TSL 5 BASIC

Gene COL6A2, Length 3,446 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2-202ENST00000310645 NISCHQ9Y2I1 1504 aa28.12■■■□□ 2.09
COL6A2-202ENST00000310645 SHROOM4Q9ULL8 1493 aa25.13■■□□□ 1.61
COL6A2-202ENST00000310645 SUPT5HO00267 1087 aaKnown RBP24.98■■□□□ 1.59
COL6A2-202ENST00000310645 HRCP23327 699 aa24.64■■□□□ 1.53
COL6A2-202ENST00000310645 PCGF6Q9BYE7 350 aa24.45■■□□□ 1.51
COL6A2-202ENST00000310645 PPARGC1BQ86YN6 1023 aaKnown RBP24.33■■□□□ 1.49
COL6A2-202ENST00000310645 MYO15BQ96JP2 1530 aa24.3■■□□□ 1.48
COL6A2-202ENST00000310645 CHIC1Q5VXU3 224 aa24.29■■□□□ 1.48
COL6A2-202ENST00000310645 DCAF8L2P0C7V8 631 aa24.01■■□□□ 1.43
COL6A2-202ENST00000310645 LOC105371045A0A1W2PR82 267 aa23.86■■□□□ 1.41
COL6A2-202ENST00000310645 ZCCHC6Q5VYS8 1495 aaKnown RBP23.83■■□□□ 1.41
COL6A2-202ENST00000310645 DCAF1Q9Y4B6 1507 aa23.59■■□□□ 1.37
COL6A2-202ENST00000310645 TRIM26Q12899 539 aaPredicted RBP23.57■■□□□ 1.36
COL6A2-202ENST00000310645 PELP1Q8IZL8 1130 aaKnown RBP23.29■■□□□ 1.32
COL6A2-202ENST00000310645 CCDC180Q9P1Z9 1646 aa23.28■■□□□ 1.32
COL6A2-202ENST00000310645 ZEB1P37275 1124 aaPredicted RBP23.23■■□□□ 1.31
COL6A2-202ENST00000310645 SCAF1Q9H7N4 1312 aaKnown RBP23.22■■□□□ 1.31
COL6A2-202ENST00000310645 EHMT2Q96KQ7 1210 aa23.21■■□□□ 1.31
COL6A2-202ENST00000310645 FAM9AQ8IZU1 332 aaPredicted RBP23.17■■□□□ 1.3
COL6A2-202ENST00000310645 TRIM41Q8WV44 630 aa23.03■■□□□ 1.28
COL6A2-202ENST00000310645 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.76■■□□□ 1.23
COL6A2-202ENST00000310645 NEUROD1Q13562 356 aa22.72■■□□□ 1.23
COL6A2-202ENST00000310645 ACIN1Q9UKV3 1341 aaKnown RBP22.71■■□□□ 1.23
COL6A2-202ENST00000310645 CCER1Q8TC90 406 aaPredicted RBP22.7■■□□□ 1.22
COL6A2-202ENST00000310645 RSF1Q96T23 1441 aaPredicted RBP22.63■■□□□ 1.21
COL6A2-202ENST00000310645 GTF3C3Q9Y5Q9 886 aa22.61■■□□□ 1.21
COL6A2-202ENST00000310645 ABCC9O60706 1549 aa22.58■■□□□ 1.21
COL6A2-202ENST00000310645 TTBK1Q5TCY1 1321 aaPredicted RBP22.57■■□□□ 1.2
COL6A2-202ENST00000310645 DIEXFQ68CQ4 756 aaKnown RBP22.53■■□□□ 1.2
COL6A2-202ENST00000310645 CENPBP07199 599 aaPredicted RBP22.51■■□□□ 1.19
COL6A2-202ENST00000310645 RB1CC1Q8TDY2 1594 aa22.5■■□□□ 1.19
COL6A2-202ENST00000310645 SCRIBQ14160 1630 aa22.44■■□□□ 1.18
COL6A2-202ENST00000310645 YTHDC1Q96MU7 727 aaKnown RBP22.32■■□□□ 1.16
COL6A2-202ENST00000310645 MYT1Q01538 1121 aa22.24■■□□□ 1.15
COL6A2-202ENST00000310645 CECR2Q9BXF3 1484 aa22.13■■□□□ 1.13
COL6A2-202ENST00000310645 ZNF316A6NFI3 1004 aaPredicted RBP22.11■■□□□ 1.13
COL6A2-202ENST00000310645 MROH2BQ7Z745 1585 aa22.03■■□□□ 1.12
COL6A2-202ENST00000310645 MIER1Q8N108 512 aa21.99■■□□□ 1.11
COL6A2-202ENST00000310645 UBTFP17480 764 aaKnown RBP21.95■■□□□ 1.1
COL6A2-202ENST00000310645 WIZO95785 1651 aa21.94■■□□□ 1.1
COL6A2-202ENST00000310645 HNRNPUL2Q1KMD3 747 aaKnown RBP21.93■■□□□ 1.1
COL6A2-202ENST00000310645 CEP162Q5TB80 1403 aa21.91■■□□□ 1.1
COL6A2-202ENST00000310645 WRNQ14191 1432 aaPredicted RBP eCLIP21.82■■□□□ 1.08
COL6A2-202ENST00000310645 CCDC88BA6NC98 1476 aa21.82■■□□□ 1.08
COL6A2-202ENST00000310645 ABCC8Q09428 1581 aa21.81■■□□□ 1.08
COL6A2-202ENST00000310645 SOGA1O94964 1423 aa21.78■■□□□ 1.08
COL6A2-202ENST00000310645 CSRNP3Q8WYN3 585 aa21.74■■□□□ 1.07
COL6A2-202ENST00000310645 TNIKQ9UKE5 1360 aa21.72■■□□□ 1.07
COL6A2-202ENST00000310645 RANGAP1P46060 587 aaPredicted RBP21.67■■□□□ 1.06
COL6A2-202ENST00000310645 RUSC2Q8N2Y8 1516 aa21.65■■□□□ 1.06
COL6A2-202ENST00000310645 BAZ1AQ9NRL2 1556 aaPredicted RBP21.64■■□□□ 1.05
COL6A2-202ENST00000310645 EIF4G1Q04637 1599 aaKnown RBP21.61■■□□□ 1.05
COL6A2-202ENST00000310645 APLP2Q06481 763 aa21.57■■□□□ 1.04
COL6A2-202ENST00000310645 NACADO15069 1562 aa21.54■■□□□ 1.04
COL6A2-202ENST00000310645 SUPT16HQ9Y5B9 1047 aaKnown RBP21.5■■□□□ 1.03
COL6A2-202ENST00000310645 GOLGA3Q08378 1498 aa21.48■■□□□ 1.03
COL6A2-202ENST00000310645 EEA1Q15075 1411 aa21.44■■□□□ 1.02
COL6A2-202ENST00000310645 TOP2AP11388 1531 aaKnown RBP21.42■■□□□ 1.02
COL6A2-202ENST00000310645 CLIP1P30622 1438 aa21.39■■□□□ 1.01
COL6A2-202ENST00000310645 SMARCA2P51531 1590 aa21.38■■□□□ 1.01
COL6A2-202ENST00000310645 TSHZ2Q9NRE2 1034 aa21.34■■□□□ 1.01
COL6A2-202ENST00000310645 BCANQ96GW7 911 aa21.3■■□□□ 1
COL6A2-202ENST00000310645 VPS8Q8N3P4 1428 aa21.27■■□□□ 1
COL6A2-202ENST00000310645 CLSPNQ9HAW4 1339 aa21.27■■□□□ 1
COL6A2-202ENST00000310645 CEP164Q9UPV0 1460 aa21.26■□□□□ 0.99
COL6A2-202ENST00000310645 SMARCA4P51532 1647 aa21.25■□□□□ 0.99
COL6A2-202ENST00000310645 ANP32EQ9BTT0 268 aa21.24■□□□□ 0.99
COL6A2-202ENST00000310645 KCNH8Q96L42 1107 aa21.22■□□□□ 0.99
COL6A2-202ENST00000310645 DHX57Q6P158 1386 aaKnown RBP21.22■□□□□ 0.99
COL6A2-202ENST00000310645 ITGAEP38570 1179 aa21.2■□□□□ 0.98
COL6A2-202ENST00000310645 RAPGEF2Q9Y4G8 1499 aa21.15■□□□□ 0.98
COL6A2-202ENST00000310645 PABPN1Q86U42 306 aaKnown RBP eCLIP21.13■□□□□ 0.97
COL6A2-202ENST00000310645 KANK4Q5T7N3 995 aaPredicted RBP21.12■□□□□ 0.97
COL6A2-202ENST00000310645 FKBP8Q14318 412 aa21.1■□□□□ 0.97
COL6A2-202ENST00000310645 SYNJ1O43426 1573 aa21.07■□□□□ 0.96
COL6A2-202ENST00000310645 KIF21BO75037 1637 aa21.07■□□□□ 0.96
COL6A2-202ENST00000310645 BCL11AQ9H165 835 aa21.05■□□□□ 0.96
COL6A2-202ENST00000310645 DDX10Q13206 875 aaKnown RBP21.01■□□□□ 0.95
COL6A2-202ENST00000310645 BAZ1BQ9UIG0 1483 aaKnown RBP20.98■□□□□ 0.95
COL6A2-202ENST00000310645 NEFLP07196 543 aa20.94■□□□□ 0.94
COL6A2-202ENST00000310645 HIRIP3Q9BW71 556 aaPredicted RBP20.92■□□□□ 0.94
COL6A2-202ENST00000310645 TRIM52Q96A61 297 aa20.91■□□□□ 0.94
COL6A2-202ENST00000310645 RBM19Q9Y4C8 960 aaKnown RBP20.89■□□□□ 0.93
COL6A2-202ENST00000310645 SIN3AQ96ST3 1273 aa20.85■□□□□ 0.93
COL6A2-202ENST00000310645 CCNB3Q8WWL7 1395 aa20.85■□□□□ 0.93
COL6A2-202ENST00000310645 ARAP1Q96P48 1450 aa20.84■□□□□ 0.93
COL6A2-202ENST00000310645 RAB3GAP2Q9H2M9 1393 aa20.8■□□□□ 0.92
COL6A2-202ENST00000310645 RRBP1Q9P2E9 1410 aaKnown RBP20.79■□□□□ 0.92
COL6A2-202ENST00000310645 UNC13AQ9UPW8 1703 aa20.79■□□□□ 0.92
COL6A2-202ENST00000310645 FAM50AQ14320 339 aaKnown RBP20.75■□□□□ 0.91
COL6A2-202ENST00000310645 ANP32CO43423 234 aa20.72■□□□□ 0.91
COL6A2-202ENST00000310645 ATP1B4Q9UN42 357 aaPredicted RBP20.69■□□□□ 0.9
COL6A2-202ENST00000310645 IRX6P78412 446 aaPredicted RBP20.69■□□□□ 0.9
COL6A2-202ENST00000310645 PPP1R15AO75807 674 aaPredicted RBP20.68■□□□□ 0.9
COL6A2-202ENST00000310645 PRXQ9BXM0 1461 aa20.68■□□□□ 0.9
COL6A2-202ENST00000310645 WDR97A6NE52 1622 aa20.67■□□□□ 0.9
COL6A2-202ENST00000310645 MAPKBP1O60336 1514 aa20.66■□□□□ 0.9
COL6A2-202ENST00000310645 CUX2O14529 1486 aa20.65■□□□□ 0.9
COL6A2-202ENST00000310645 ATAD2BQ9ULI0 1458 aa20.65■□□□□ 0.9
COL6A2-202ENST00000310645 MSH5O43196 834 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms