RNA–Protein interactions for RNA: ENST00000309615.7

APTX-201, Transcript of aprataxin, humanhuman

TSL 1 (best) BASIC

Gene APTX, Length 1,859 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APTX-201ENST00000309615 NISCHQ9Y2I1 1504 aa30.74■■■□□ 2.51
APTX-201ENST00000309615 CCDC180Q9P1Z9 1646 aa27.14■■□□□ 1.93
APTX-201ENST00000309615 ABCC9O60706 1549 aa26.33■■□□□ 1.81
APTX-201ENST00000309615 ZCCHC6Q5VYS8 1495 aaKnown RBP25.68■■□□□ 1.7
APTX-201ENST00000309615 DCAF8L2P0C7V8 631 aa25.62■■□□□ 1.69
APTX-201ENST00000309615 NACADO15069 1562 aa25.45■■□□□ 1.67
APTX-201ENST00000309615 DCAF1Q9Y4B6 1507 aa25.41■■□□□ 1.66
APTX-201ENST00000309615 RB1CC1Q8TDY2 1594 aa25.41■■□□□ 1.66
APTX-201ENST00000309615 MYO15BQ96JP2 1530 aa25.39■■□□□ 1.66
APTX-201ENST00000309615 SCRIBQ14160 1630 aa24.85■■□□□ 1.57
APTX-201ENST00000309615 UNC13AQ9UPW8 1703 aa24.84■■□□□ 1.57
APTX-201ENST00000309615 PABPN1Q86U42 306 aaKnown RBP eCLIP24.68■■□□□ 1.54
APTX-201ENST00000309615 BICRAQ9NZM4 1560 aa24.66■■□□□ 1.54
APTX-201ENST00000309615 SHROOM4Q9ULL8 1493 aa24.55■■□□□ 1.52
APTX-201ENST00000309615 EIF4G1Q04637 1599 aaKnown RBP23.98■■□□□ 1.43
APTX-201ENST00000309615 CECR2Q9BXF3 1484 aa23.95■■□□□ 1.42
APTX-201ENST00000309615 DNAJC5BQ9UF47 199 aa23.91■■□□□ 1.42
APTX-201ENST00000309615 CC2D2AQ9P2K1 1620 aa23.81■■□□□ 1.4
APTX-201ENST00000309615 BAZ1AQ9NRL2 1556 aaPredicted RBP23.79■■□□□ 1.4
APTX-201ENST00000309615 SMARCA4P51532 1647 aa23.77■■□□□ 1.4
APTX-201ENST00000309615 MROH2BQ7Z745 1585 aa23.71■■□□□ 1.39
APTX-201ENST00000309615 ATAD2BQ9ULI0 1458 aa23.58■■□□□ 1.37
APTX-201ENST00000309615 RSF1Q96T23 1441 aaPredicted RBP23.56■■□□□ 1.36
APTX-201ENST00000309615 SMARCA2P51531 1590 aa23.54■■□□□ 1.36
APTX-201ENST00000309615 PEG3Q9GZU2 1588 aa23.52■■□□□ 1.36
APTX-201ENST00000309615 NCAPD3P42695 1498 aa23.51■■□□□ 1.35
APTX-201ENST00000309615 WIZO95785 1651 aa23.47■■□□□ 1.35
APTX-201ENST00000309615 HMGXB3Q12766 1538 aa23.41■■□□□ 1.34
APTX-201ENST00000309615 BAZ1BQ9UIG0 1483 aaKnown RBP23.4■■□□□ 1.34
APTX-201ENST00000309615 SUPT5HO00267 1087 aaKnown RBP23.25■■□□□ 1.31
APTX-201ENST00000309615 TOP2AP11388 1531 aaKnown RBP23.22■■□□□ 1.31
APTX-201ENST00000309615 CCDC88BA6NC98 1476 aa22.97■■□□□ 1.27
APTX-201ENST00000309615 NESP48681 1621 aa22.88■■□□□ 1.25
APTX-201ENST00000309615 CADPSQ9ULU8 1353 aa22.85■■□□□ 1.25
APTX-201ENST00000309615 LAMC3Q9Y6N6 1575 aa22.81■■□□□ 1.24
APTX-201ENST00000309615 CFTRP13569 1480 aa22.78■■□□□ 1.24
APTX-201ENST00000309615 PDS5BQ9NTI5 1447 aa22.66■■□□□ 1.22
APTX-201ENST00000309615 ERCC6Q03468 1493 aa22.65■■□□□ 1.22
APTX-201ENST00000309615 FANCD2Q9BXW9 1451 aa22.59■■□□□ 1.21
APTX-201ENST00000309615 KIF21AQ7Z4S6 1674 aa22.58■■□□□ 1.21
APTX-201ENST00000309615 PRDM2Q13029 1718 aa22.57■■□□□ 1.2
APTX-201ENST00000309615 CEP164Q9UPV0 1460 aa22.52■■□□□ 1.2
APTX-201ENST00000309615 THOC2Q8NI27 1593 aaKnown RBP22.43■■□□□ 1.18
APTX-201ENST00000309615 MRC2Q9UBG0 1479 aa22.42■■□□□ 1.18
APTX-201ENST00000309615 URB2Q14146 1524 aaKnown RBP22.35■■□□□ 1.17
APTX-201ENST00000309615 WDR62O43379 1518 aa22.33■■□□□ 1.17
APTX-201ENST00000309615 TOPBP1Q92547 1522 aa22.26■■□□□ 1.15
APTX-201ENST00000309615 CUX2O14529 1486 aa22.26■■□□□ 1.15
APTX-201ENST00000309615 ABCC8Q09428 1581 aa22.24■■□□□ 1.15
APTX-201ENST00000309615 DNMBPQ6XZF7 1577 aa22.24■■□□□ 1.15
APTX-201ENST00000309615 CUX1P39880 1505 aa22.23■■□□□ 1.15
APTX-201ENST00000309615 WRNQ14191 1432 aaPredicted RBP eCLIP22.2■■□□□ 1.14
APTX-201ENST00000309615 SYNJ1O43426 1573 aa22.13■■□□□ 1.13
APTX-201ENST00000309615 POLA1P09884 1462 aaPredicted RBP22.1■■□□□ 1.13
APTX-201ENST00000309615 FGD5Q6ZNL6 1462 aa22.1■■□□□ 1.13
APTX-201ENST00000309615 TOP2BQ02880 1626 aa22.09■■□□□ 1.13
APTX-201ENST00000309615 BIVM-ERCC5R4GMW8 1640 aa22.08■■□□□ 1.12
APTX-201ENST00000309615 IFT140Q96RY7 1462 aa22.02■■□□□ 1.12
APTX-201ENST00000309615 RAD54L2Q9Y4B4 1467 aa22.02■■□□□ 1.12
APTX-201ENST00000309615 SOGA1O94964 1423 aa22.02■■□□□ 1.12
APTX-201ENST00000309615 TARBP1Q13395 1621 aaKnown RBP21.99■■□□□ 1.11
APTX-201ENST00000309615 ZNF608Q9ULD9 1512 aaPredicted RBP21.95■■□□□ 1.1
APTX-201ENST00000309615 TRIM41Q8WV44 630 aa21.92■■□□□ 1.1
APTX-201ENST00000309615 ABCA10Q8WWZ4 1543 aa21.88■■□□□ 1.09
APTX-201ENST00000309615 TDRD9Q8NDG6 1382 aaKnown RBP21.88■■□□□ 1.09
APTX-201ENST00000309615 AQRO60306 1485 aaKnown RBP eCLIP21.87■■□□□ 1.09
APTX-201ENST00000309615 WDR97A6NE52 1622 aa21.86■■□□□ 1.09
APTX-201ENST00000309615 CHIC1Q5VXU3 224 aa21.86■■□□□ 1.09
APTX-201ENST00000309615 EIF4G3O43432 1585 aaKnown RBP21.84■■□□□ 1.09
APTX-201ENST00000309615 GAPVD1Q14C86 1478 aa21.77■■□□□ 1.07
APTX-201ENST00000309615 ABCA5Q8WWZ7 1642 aa21.76■■□□□ 1.07
APTX-201ENST00000309615 GRIN2BQ13224 1484 aa21.71■■□□□ 1.07
APTX-201ENST00000309615 KIF27Q86VH2 1401 aa21.7■■□□□ 1.06
APTX-201ENST00000309615 PBRM1Q86U86 1689 aa21.67■■□□□ 1.06
APTX-201ENST00000309615 SNAPC4Q5SXM2 1469 aa21.65■■□□□ 1.06
APTX-201ENST00000309615 RUSC2Q8N2Y8 1516 aa21.64■■□□□ 1.06
APTX-201ENST00000309615 ERICH3Q5RHP9 1530 aa21.62■■□□□ 1.05
APTX-201ENST00000309615 MAGI1Q96QZ7 1491 aaPredicted RBP21.61■■□□□ 1.05
APTX-201ENST00000309615 IGF1RP08069 1367 aa21.6■■□□□ 1.05
APTX-201ENST00000309615 FBLN2P98095 1184 aa21.55■■□□□ 1.04
APTX-201ENST00000309615 SYNJ2O15056 1496 aa21.53■■□□□ 1.04
APTX-201ENST00000309615 ADAMTS12P58397 1594 aa21.53■■□□□ 1.04
APTX-201ENST00000309615 CHMP7Q8WUX9 453 aaPredicted RBP21.52■■□□□ 1.03
APTX-201ENST00000309615 FHAD1B1AJZ9 1412 aa21.51■■□□□ 1.03
APTX-201ENST00000309615 CHD1O14646 1710 aa21.49■■□□□ 1.03
APTX-201ENST00000309615 FAM9AQ8IZU1 332 aaPredicted RBP21.49■■□□□ 1.03
APTX-201ENST00000309615 CUL7Q14999 1698 aa21.47■■□□□ 1.03
APTX-201ENST00000309615 EEA1Q15075 1411 aa21.47■■□□□ 1.03
APTX-201ENST00000309615 CARMIL1Q5VZK9 1371 aa21.46■■□□□ 1.03
APTX-201ENST00000309615 GRIN2AQ12879 1464 aa21.44■■□□□ 1.02
APTX-201ENST00000309615 OSCARQ8IYS5 282 aa21.43■■□□□ 1.02
APTX-201ENST00000309615 CSRNP3Q8WYN3 585 aa21.43■■□□□ 1.02
APTX-201ENST00000309615 PRXQ9BXM0 1461 aa21.37■■□□□ 1.01
APTX-201ENST00000309615 RAPGEF2Q9Y4G8 1499 aa21.36■■□□□ 1.01
APTX-201ENST00000309615 NUP160Q12769 1436 aa21.33■■□□□ 1
APTX-201ENST00000309615 CEP170Q5SW79 1584 aa21.32■■□□□ 1
APTX-201ENST00000309615 CLASP1Q7Z460 1538 aa21.27■■□□□ 1
APTX-201ENST00000309615 DNAJC5Q9H3Z4 198 aa21.24■□□□□ 0.99
APTX-201ENST00000309615 KIF21BO75037 1637 aa21.23■□□□□ 0.99
APTX-201ENST00000309615 EHMT2Q96KQ7 1210 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms