RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 NISCHQ9Y2I1 1504 aa37.27■■■■□ 3.56
CCDC88B-201ENST00000301897 ABCC9O60706 1549 aa33.66■■■□□ 2.98
CCDC88B-201ENST00000301897 CCDC180Q9P1Z9 1646 aa33.59■■■□□ 2.97
CCDC88B-201ENST00000301897 RB1CC1Q8TDY2 1594 aa32.06■■■□□ 2.72
CCDC88B-201ENST00000301897 NACADO15069 1562 aa31.8■■■□□ 2.68
CCDC88B-201ENST00000301897 DNAJC5BQ9UF47 199 aa31.67■■■□□ 2.66
CCDC88B-201ENST00000301897 DCAF8L2P0C7V8 631 aa31.48■■■□□ 2.63
CCDC88B-201ENST00000301897 MYO15BQ96JP2 1530 aa31.34■■■□□ 2.61
CCDC88B-201ENST00000301897 PABPN1Q86U42 306 aaKnown RBP eCLIP31.27■■■□□ 2.6
CCDC88B-201ENST00000301897 UNC13AQ9UPW8 1703 aa31.24■■■□□ 2.59
CCDC88B-201ENST00000301897 BICRAQ9NZM4 1560 aa31.05■■■□□ 2.56
CCDC88B-201ENST00000301897 DCAF1Q9Y4B6 1507 aa30.84■■■□□ 2.53
CCDC88B-201ENST00000301897 ZCCHC6Q5VYS8 1495 aaKnown RBP30.84■■■□□ 2.53
CCDC88B-201ENST00000301897 SHROOM4Q9ULL8 1493 aa30.77■■■□□ 2.52
CCDC88B-201ENST00000301897 SCRIBQ14160 1630 aa30.49■■■□□ 2.47
CCDC88B-201ENST00000301897 CC2D2AQ9P2K1 1620 aa30.43■■■□□ 2.46
CCDC88B-201ENST00000301897 CECR2Q9BXF3 1484 aa30.38■■■□□ 2.45
CCDC88B-201ENST00000301897 EIF4G1Q04637 1599 aaKnown RBP30.32■■■□□ 2.45
CCDC88B-201ENST00000301897 DNAJC5Q9H3Z4 198 aa29.35■■■□□ 2.29
CCDC88B-201ENST00000301897 NCAPD3P42695 1498 aa29.33■■■□□ 2.29
CCDC88B-201ENST00000301897 CUX2O14529 1486 aa29.2■■■□□ 2.26
CCDC88B-201ENST00000301897 ATAD2BQ9ULI0 1458 aa29.18■■■□□ 2.26
CCDC88B-201ENST00000301897 SMARCA2P51531 1590 aa29.16■■■□□ 2.26
CCDC88B-201ENST00000301897 ERCC6Q03468 1493 aa29.15■■■□□ 2.26
CCDC88B-201ENST00000301897 HMGXB3Q12766 1538 aa29.12■■■□□ 2.25
CCDC88B-201ENST00000301897 SMARCA4P51532 1647 aa29.11■■■□□ 2.25
CCDC88B-201ENST00000301897 BAZ1AQ9NRL2 1556 aaPredicted RBP28.98■■■□□ 2.23
CCDC88B-201ENST00000301897 BAZ1BQ9UIG0 1483 aaKnown RBP28.91■■■□□ 2.22
CCDC88B-201ENST00000301897 PEG3Q9GZU2 1588 aa28.87■■■□□ 2.21
CCDC88B-201ENST00000301897 NESP48681 1621 aa28.83■■■□□ 2.21
CCDC88B-201ENST00000301897 LAMC3Q9Y6N6 1575 aa28.72■■■□□ 2.19
CCDC88B-201ENST00000301897 MROH2BQ7Z745 1585 aa28.67■■■□□ 2.18
CCDC88B-201ENST00000301897 THOC2Q8NI27 1593 aaKnown RBP28.64■■■□□ 2.18
CCDC88B-201ENST00000301897 PDS5BQ9NTI5 1447 aa28.58■■■□□ 2.17
CCDC88B-201ENST00000301897 KIF21AQ7Z4S6 1674 aa28.5■■■□□ 2.15
CCDC88B-201ENST00000301897 CADPSQ9ULU8 1353 aa28.42■■■□□ 2.14
CCDC88B-201ENST00000301897 WIZO95785 1651 aa28.3■■■□□ 2.12
CCDC88B-201ENST00000301897 MRC2Q9UBG0 1479 aa28.3■■■□□ 2.12
CCDC88B-201ENST00000301897 WDR62O43379 1518 aa28.23■■■□□ 2.11
CCDC88B-201ENST00000301897 CEP164Q9UPV0 1460 aa28.16■■■□□ 2.1
CCDC88B-201ENST00000301897 FANCD2Q9BXW9 1451 aa28.08■■■□□ 2.09
CCDC88B-201ENST00000301897 CFTRP13569 1480 aa28.06■■■□□ 2.08
CCDC88B-201ENST00000301897 RSF1Q96T23 1441 aaPredicted RBP28.02■■■□□ 2.08
CCDC88B-201ENST00000301897 TOP2AP11388 1531 aaKnown RBP28■■■□□ 2.07
CCDC88B-201ENST00000301897 TRIM41Q8WV44 630 aa27.92■■■□□ 2.06
CCDC88B-201ENST00000301897 URB2Q14146 1524 aaKnown RBP27.83■■■□□ 2.05
CCDC88B-201ENST00000301897 OSCARQ8IYS5 282 aa27.81■■■□□ 2.04
CCDC88B-201ENST00000301897 PRDM2Q13029 1718 aa27.8■■■□□ 2.04
CCDC88B-201ENST00000301897 CCDC88BA6NC98 1476 aa27.64■■■□□ 2.02
CCDC88B-201ENST00000301897 IFT140Q96RY7 1462 aa27.62■■■□□ 2.01
CCDC88B-201ENST00000301897 ABCC8Q09428 1581 aa27.55■■■□□ 2
CCDC88B-201ENST00000301897 TOPBP1Q92547 1522 aa27.53■■■□□ 2
CCDC88B-201ENST00000301897 ZNF608Q9ULD9 1512 aaPredicted RBP27.5■■□□□ 1.99
CCDC88B-201ENST00000301897 DNMBPQ6XZF7 1577 aa27.43■■□□□ 1.98
CCDC88B-201ENST00000301897 RIMBP3CA6NJZ7 1639 aa27.41■■□□□ 1.98
CCDC88B-201ENST00000301897 RIMBP3BA6NNM3 1639 aa27.41■■□□□ 1.98
CCDC88B-201ENST00000301897 RIMBP3Q9UFD9 1639 aa27.41■■□□□ 1.98
CCDC88B-201ENST00000301897 EIF4G3O43432 1585 aaKnown RBP27.38■■□□□ 1.97
CCDC88B-201ENST00000301897 ARHGEF11O15085 1522 aa27.32■■□□□ 1.96
CCDC88B-201ENST00000301897 TARBP1Q13395 1621 aaKnown RBP27.29■■□□□ 1.96
CCDC88B-201ENST00000301897 AQRO60306 1485 aaKnown RBP eCLIP27.24■■□□□ 1.95
CCDC88B-201ENST00000301897 POLA1P09884 1462 aaPredicted RBP27.23■■□□□ 1.95
CCDC88B-201ENST00000301897 CHD1O14646 1710 aa27.21■■□□□ 1.95
CCDC88B-201ENST00000301897 FBLN2P98095 1184 aa27.12■■□□□ 1.93
CCDC88B-201ENST00000301897 SOGA1O94964 1423 aa27.12■■□□□ 1.93
CCDC88B-201ENST00000301897 WDR97A6NE52 1622 aa27.12■■□□□ 1.93
CCDC88B-201ENST00000301897 CYB5RLQ6IPT4 315 aa27.11■■□□□ 1.93
CCDC88B-201ENST00000301897 RAD54L2Q9Y4B4 1467 aa27.08■■□□□ 1.93
CCDC88B-201ENST00000301897 TDRD9Q8NDG6 1382 aaKnown RBP27.05■■□□□ 1.92
CCDC88B-201ENST00000301897 FGD5Q6ZNL6 1462 aa27.02■■□□□ 1.92
CCDC88B-201ENST00000301897 ARAP1Q96P48 1450 aa27.02■■□□□ 1.92
CCDC88B-201ENST00000301897 SNAPC4Q5SXM2 1469 aa26.98■■□□□ 1.91
CCDC88B-201ENST00000301897 MAGI1Q96QZ7 1491 aaPredicted RBP26.97■■□□□ 1.91
CCDC88B-201ENST00000301897 CUX1P39880 1505 aa26.95■■□□□ 1.91
CCDC88B-201ENST00000301897 GRIN2BQ13224 1484 aa26.93■■□□□ 1.9
CCDC88B-201ENST00000301897 CHMP7Q8WUX9 453 aaPredicted RBP26.93■■□□□ 1.9
CCDC88B-201ENST00000301897 SYNJ1O43426 1573 aa26.92■■□□□ 1.9
CCDC88B-201ENST00000301897 CLASP1Q7Z460 1538 aa26.9■■□□□ 1.9
CCDC88B-201ENST00000301897 TRHP20396 242 aaPredicted RBP26.89■■□□□ 1.9
CCDC88B-201ENST00000301897 SYNJ2O15056 1496 aa26.87■■□□□ 1.89
CCDC88B-201ENST00000301897 GAPVD1Q14C86 1478 aa26.8■■□□□ 1.88
CCDC88B-201ENST00000301897 PBRM1Q86U86 1689 aa26.78■■□□□ 1.88
CCDC88B-201ENST00000301897 ABCA10Q8WWZ4 1543 aa26.75■■□□□ 1.87
CCDC88B-201ENST00000301897 ABCA5Q8WWZ7 1642 aa26.7■■□□□ 1.86
CCDC88B-201ENST00000301897 WRNQ14191 1432 aaPredicted RBP eCLIP26.63■■□□□ 1.85
CCDC88B-201ENST00000301897 SUPT5HO00267 1087 aaKnown RBP26.6■■□□□ 1.85
CCDC88B-201ENST00000301897 GRIN2AQ12879 1464 aa26.55■■□□□ 1.84
CCDC88B-201ENST00000301897 TOP2BQ02880 1626 aa26.52■■□□□ 1.84
CCDC88B-201ENST00000301897 BIVM-ERCC5R4GMW8 1640 aa26.52■■□□□ 1.84
CCDC88B-201ENST00000301897 ADAMTS12P58397 1594 aa26.51■■□□□ 1.83
CCDC88B-201ENST00000301897 NUP160Q12769 1436 aa26.48■■□□□ 1.83
CCDC88B-201ENST00000301897 FHAD1B1AJZ9 1412 aa26.47■■□□□ 1.83
CCDC88B-201ENST00000301897 CEP170Q5SW79 1584 aa26.44■■□□□ 1.82
CCDC88B-201ENST00000301897 ERICH3Q5RHP9 1530 aa26.43■■□□□ 1.82
CCDC88B-201ENST00000301897 ERCC6L2Q5T890 1561 aa26.39■■□□□ 1.82
CCDC88B-201ENST00000301897 SHROOM2Q13796 1616 aa26.39■■□□□ 1.81
CCDC88B-201ENST00000301897 AEBP2Q6ZN18 517 aaPredicted RBP26.3■■□□□ 1.8
CCDC88B-201ENST00000301897 PRG4Q92954 1404 aaPredicted RBP26.23■■□□□ 1.79
CCDC88B-201ENST00000301897 JPH4Q96JJ6 628 aa26.21■■□□□ 1.79
CCDC88B-201ENST00000301897 RUSC2Q8N2Y8 1516 aa26.14■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms