RNA–Protein interactions for RNA: ENST00000298317.8

RPUSD4-201, Transcript of RNA pseudouridylate synthase domain containing 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RPUSD4, Length 2,512 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4-201ENST00000298317 NISCHQ9Y2I1 1504 aa26.09■■□□□ 1.77
RPUSD4-201ENST00000298317 HRCP23327 699 aa22.84■■□□□ 1.25
RPUSD4-201ENST00000298317 SHROOM4Q9ULL8 1493 aa22.69■■□□□ 1.22
RPUSD4-201ENST00000298317 SUPT5HO00267 1087 aaKnown RBP22.55■■□□□ 1.2
RPUSD4-201ENST00000298317 MYO15BQ96JP2 1530 aa22.48■■□□□ 1.19
RPUSD4-201ENST00000298317 PELP1Q8IZL8 1130 aaKnown RBP22.38■■□□□ 1.17
RPUSD4-201ENST00000298317 CHIC1Q5VXU3 224 aa22.31■■□□□ 1.16
RPUSD4-201ENST00000298317 PCGF6Q9BYE7 350 aa22.29■■□□□ 1.16
RPUSD4-201ENST00000298317 ZCCHC6Q5VYS8 1495 aaKnown RBP22.23■■□□□ 1.15
RPUSD4-201ENST00000298317 PPARGC1BQ86YN6 1023 aaKnown RBP22.22■■□□□ 1.15
RPUSD4-201ENST00000298317 DCAF1Q9Y4B6 1507 aa22.1■■□□□ 1.13
RPUSD4-201ENST00000298317 CCDC180Q9P1Z9 1646 aa21.87■■□□□ 1.09
RPUSD4-201ENST00000298317 MYT1Q01538 1121 aa21.76■■□□□ 1.07
RPUSD4-201ENST00000298317 TRIM26Q12899 539 aaPredicted RBP21.73■■□□□ 1.07
RPUSD4-201ENST00000298317 LOC105371045A0A1W2PR82 267 aa21.65■■□□□ 1.06
RPUSD4-201ENST00000298317 ZEB1P37275 1124 aaPredicted RBP21.57■■□□□ 1.04
RPUSD4-201ENST00000298317 SCAF1Q9H7N4 1312 aaKnown RBP21.49■■□□□ 1.03
RPUSD4-201ENST00000298317 DCAF8L2P0C7V8 631 aa21.29■■□□□ 1
RPUSD4-201ENST00000298317 ABCC9O60706 1549 aa21.13■□□□□ 0.97
RPUSD4-201ENST00000298317 ACIN1Q9UKV3 1341 aaKnown RBP21.03■□□□□ 0.96
RPUSD4-201ENST00000298317 TRIM41Q8WV44 630 aa20.96■□□□□ 0.95
RPUSD4-201ENST00000298317 NEUROD1Q13562 356 aa20.93■□□□□ 0.94
RPUSD4-201ENST00000298317 RSF1Q96T23 1441 aaPredicted RBP20.91■□□□□ 0.94
RPUSD4-201ENST00000298317 RB1CC1Q8TDY2 1594 aa20.83■□□□□ 0.93
RPUSD4-201ENST00000298317 FAM9AQ8IZU1 332 aaPredicted RBP20.8■□□□□ 0.92
RPUSD4-201ENST00000298317 GTF3C3Q9Y5Q9 886 aa20.78■□□□□ 0.92
RPUSD4-201ENST00000298317 CENPBP07199 599 aaPredicted RBP20.76■□□□□ 0.91
RPUSD4-201ENST00000298317 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.7■□□□□ 0.9
RPUSD4-201ENST00000298317 DIEXFQ68CQ4 756 aaKnown RBP20.69■□□□□ 0.9
RPUSD4-201ENST00000298317 CCER1Q8TC90 406 aaPredicted RBP20.68■□□□□ 0.9
RPUSD4-201ENST00000298317 TTBK1Q5TCY1 1321 aaPredicted RBP20.67■□□□□ 0.9
RPUSD4-201ENST00000298317 SCRIBQ14160 1630 aa20.6■□□□□ 0.89
RPUSD4-201ENST00000298317 EHMT2Q96KQ7 1210 aa20.58■□□□□ 0.89
RPUSD4-201ENST00000298317 WRNQ14191 1432 aaPredicted RBP eCLIP20.44■□□□□ 0.86
RPUSD4-201ENST00000298317 EIF4G1Q04637 1599 aaKnown RBP20.36■□□□□ 0.85
RPUSD4-201ENST00000298317 ZNF316A6NFI3 1004 aaPredicted RBP20.36■□□□□ 0.85
RPUSD4-201ENST00000298317 MROH2BQ7Z745 1585 aa20.32■□□□□ 0.84
RPUSD4-201ENST00000298317 CECR2Q9BXF3 1484 aa20.31■□□□□ 0.84
RPUSD4-201ENST00000298317 WIZO95785 1651 aa20.26■□□□□ 0.83
RPUSD4-201ENST00000298317 CEP162Q5TB80 1403 aa20.23■□□□□ 0.83
RPUSD4-201ENST00000298317 BAZ1AQ9NRL2 1556 aaPredicted RBP20.22■□□□□ 0.83
RPUSD4-201ENST00000298317 YTHDC1Q96MU7 727 aaKnown RBP20.21■□□□□ 0.83
RPUSD4-201ENST00000298317 MIER1Q8N108 512 aa20.16■□□□□ 0.82
RPUSD4-201ENST00000298317 BCL11AQ9H165 835 aa20.16■□□□□ 0.82
RPUSD4-201ENST00000298317 TNIKQ9UKE5 1360 aa20.14■□□□□ 0.82
RPUSD4-201ENST00000298317 CCDC88BA6NC98 1476 aa20.09■□□□□ 0.81
RPUSD4-201ENST00000298317 ABCC8Q09428 1581 aa20.05■□□□□ 0.8
RPUSD4-201ENST00000298317 NACADO15069 1562 aa20.03■□□□□ 0.8
RPUSD4-201ENST00000298317 EEA1Q15075 1411 aa20.01■□□□□ 0.79
RPUSD4-201ENST00000298317 CLSPNQ9HAW4 1339 aa20■□□□□ 0.79
RPUSD4-201ENST00000298317 SOGA1O94964 1423 aa19.99■□□□□ 0.79
RPUSD4-201ENST00000298317 TOP2AP11388 1531 aaKnown RBP19.95■□□□□ 0.78
RPUSD4-201ENST00000298317 PRKCSHP14314 528 aaPredicted RBP19.93■□□□□ 0.78
RPUSD4-201ENST00000298317 GOLGA3Q08378 1498 aa19.91■□□□□ 0.78
RPUSD4-201ENST00000298317 CSRNP3Q8WYN3 585 aa19.9■□□□□ 0.78
RPUSD4-201ENST00000298317 SMARCA2P51531 1590 aa19.87■□□□□ 0.77
RPUSD4-201ENST00000298317 SUPT16HQ9Y5B9 1047 aaKnown RBP19.87■□□□□ 0.77
RPUSD4-201ENST00000298317 RUSC2Q8N2Y8 1516 aa19.86■□□□□ 0.77
RPUSD4-201ENST00000298317 UBTFP17480 764 aaKnown RBP19.84■□□□□ 0.77
RPUSD4-201ENST00000298317 HNRNPUL2Q1KMD3 747 aaKnown RBP19.83■□□□□ 0.76
RPUSD4-201ENST00000298317 ANP32EQ9BTT0 268 aa19.75■□□□□ 0.75
RPUSD4-201ENST00000298317 TSHZ2Q9NRE2 1034 aa19.75■□□□□ 0.75
RPUSD4-201ENST00000298317 KIF21BO75037 1637 aa19.74■□□□□ 0.75
RPUSD4-201ENST00000298317 SMARCA4P51532 1647 aa19.74■□□□□ 0.75
RPUSD4-201ENST00000298317 VPS8Q8N3P4 1428 aa19.73■□□□□ 0.75
RPUSD4-201ENST00000298317 CEP164Q9UPV0 1460 aa19.72■□□□□ 0.75
RPUSD4-201ENST00000298317 CLIP1P30622 1438 aa19.69■□□□□ 0.74
RPUSD4-201ENST00000298317 DHX57Q6P158 1386 aaKnown RBP19.64■□□□□ 0.73
RPUSD4-201ENST00000298317 BAZ1BQ9UIG0 1483 aaKnown RBP19.62■□□□□ 0.73
RPUSD4-201ENST00000298317 APLP2Q06481 763 aa19.54■□□□□ 0.72
RPUSD4-201ENST00000298317 SYNJ1O43426 1573 aa19.53■□□□□ 0.72
RPUSD4-201ENST00000298317 ERICH6Q7L0X2 663 aa19.52■□□□□ 0.71
RPUSD4-201ENST00000298317 RAPGEF2Q9Y4G8 1499 aa19.48■□□□□ 0.71
RPUSD4-201ENST00000298317 CUX2O14529 1486 aa19.43■□□□□ 0.7
RPUSD4-201ENST00000298317 RRBP1Q9P2E9 1410 aaKnown RBP19.39■□□□□ 0.69
RPUSD4-201ENST00000298317 KCNH8Q96L42 1107 aa19.35■□□□□ 0.69
RPUSD4-201ENST00000298317 PEG3Q9GZU2 1588 aa19.34■□□□□ 0.69
RPUSD4-201ENST00000298317 UNC13AQ9UPW8 1703 aa19.34■□□□□ 0.69
RPUSD4-201ENST00000298317 ARAP1Q96P48 1450 aa19.34■□□□□ 0.69
RPUSD4-201ENST00000298317 BCANQ96GW7 911 aa19.31■□□□□ 0.68
RPUSD4-201ENST00000298317 FKBP8Q14318 412 aa19.3■□□□□ 0.68
RPUSD4-201ENST00000298317 ERICH3Q5RHP9 1530 aa19.29■□□□□ 0.68
RPUSD4-201ENST00000298317 RBM19Q9Y4C8 960 aaKnown RBP19.28■□□□□ 0.68
RPUSD4-201ENST00000298317 KANK4Q5T7N3 995 aaPredicted RBP19.27■□□□□ 0.68
RPUSD4-201ENST00000298317 MAPKBP1O60336 1514 aa19.25■□□□□ 0.67
RPUSD4-201ENST00000298317 RANGAP1P46060 587 aaPredicted RBP19.24■□□□□ 0.67
RPUSD4-201ENST00000298317 PRXQ9BXM0 1461 aa19.22■□□□□ 0.67
RPUSD4-201ENST00000298317 CCNB3Q8WWL7 1395 aa19.22■□□□□ 0.67
RPUSD4-201ENST00000298317 TOP2BQ02880 1626 aa19.22■□□□□ 0.67
RPUSD4-201ENST00000298317 NEFLP07196 543 aa19.17■□□□□ 0.66
RPUSD4-201ENST00000298317 BIVM-ERCC5R4GMW8 1640 aa19.15■□□□□ 0.66
RPUSD4-201ENST00000298317 RAB3GAP2Q9H2M9 1393 aa19.15■□□□□ 0.66
RPUSD4-201ENST00000298317 WDR97A6NE52 1622 aa19.12■□□□□ 0.65
RPUSD4-201ENST00000298317 PPP1R15AO75807 674 aaPredicted RBP19.12■□□□□ 0.65
RPUSD4-201ENST00000298317 CCER2I3L3R5 266 aa19.11■□□□□ 0.65
RPUSD4-201ENST00000298317 MSH5O43196 834 aa19.11■□□□□ 0.65
RPUSD4-201ENST00000298317 DDX10Q13206 875 aaKnown RBP19.11■□□□□ 0.65
RPUSD4-201ENST00000298317 FANCIQ9NVI1 1328 aa19.05■□□□□ 0.64
RPUSD4-201ENST00000298317 BICRAQ9NZM4 1560 aa19.05■□□□□ 0.64
RPUSD4-201ENST00000298317 ITGAEP38570 1179 aa19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 125.7 ms