RNA–Protein interactions for RNA: ENST00000285398.6

ERCC3-201, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ERCC3, Length 2,750 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3-201ENST00000285398 NISCHQ9Y2I1 1504 aa22.55■■□□□ 1.2
ERCC3-201ENST00000285398 CCDC180Q9P1Z9 1646 aa19.64■□□□□ 0.73
ERCC3-201ENST00000285398 DCAF8L2P0C7V8 631 aa19.07■□□□□ 0.64
ERCC3-201ENST00000285398 ABCC9O60706 1549 aa18.99■□□□□ 0.63
ERCC3-201ENST00000285398 ZCCHC6Q5VYS8 1495 aaKnown RBP18.89■□□□□ 0.61
ERCC3-201ENST00000285398 SHROOM4Q9ULL8 1493 aa18.66■□□□□ 0.58
ERCC3-201ENST00000285398 DCAF1Q9Y4B6 1507 aa18.55■□□□□ 0.56
ERCC3-201ENST00000285398 MYO15BQ96JP2 1530 aa18.38■□□□□ 0.53
ERCC3-201ENST00000285398 NACADO15069 1562 aa18.37■□□□□ 0.53
ERCC3-201ENST00000285398 RB1CC1Q8TDY2 1594 aa18.28■□□□□ 0.52
ERCC3-201ENST00000285398 SCRIBQ14160 1630 aa18.24■□□□□ 0.51
ERCC3-201ENST00000285398 PABPN1Q86U42 306 aaKnown RBP eCLIP18■□□□□ 0.47
ERCC3-201ENST00000285398 UNC13AQ9UPW8 1703 aa17.94■□□□□ 0.46
ERCC3-201ENST00000285398 SUPT5HO00267 1087 aaKnown RBP17.86■□□□□ 0.45
ERCC3-201ENST00000285398 BICRAQ9NZM4 1560 aa17.79■□□□□ 0.44
ERCC3-201ENST00000285398 CECR2Q9BXF3 1484 aa17.69■□□□□ 0.42
ERCC3-201ENST00000285398 HRCP23327 699 aa17.55■□□□□ 0.4
ERCC3-201ENST00000285398 RSF1Q96T23 1441 aaPredicted RBP17.52■□□□□ 0.39
ERCC3-201ENST00000285398 MROH2BQ7Z745 1585 aa17.51■□□□□ 0.39
ERCC3-201ENST00000285398 BAZ1AQ9NRL2 1556 aaPredicted RBP17.4■□□□□ 0.38
ERCC3-201ENST00000285398 SMARCA4P51532 1647 aa17.36■□□□□ 0.37
ERCC3-201ENST00000285398 WIZO95785 1651 aa17.35■□□□□ 0.37
ERCC3-201ENST00000285398 EIF4G1Q04637 1599 aaKnown RBP17.27■□□□□ 0.36
ERCC3-201ENST00000285398 ATAD2BQ9ULI0 1458 aa17.15■□□□□ 0.34
ERCC3-201ENST00000285398 PELP1Q8IZL8 1130 aaKnown RBP17.15■□□□□ 0.34
ERCC3-201ENST00000285398 PEG3Q9GZU2 1588 aa17.11■□□□□ 0.33
ERCC3-201ENST00000285398 PCGF6Q9BYE7 350 aa17.1■□□□□ 0.33
ERCC3-201ENST00000285398 CHIC1Q5VXU3 224 aa17.09■□□□□ 0.33
ERCC3-201ENST00000285398 CC2D2AQ9P2K1 1620 aa17.07■□□□□ 0.32
ERCC3-201ENST00000285398 SMARCA2P51531 1590 aa17.07■□□□□ 0.32
ERCC3-201ENST00000285398 BAZ1BQ9UIG0 1483 aaKnown RBP17.05■□□□□ 0.32
ERCC3-201ENST00000285398 TOP2AP11388 1531 aaKnown RBP17.05■□□□□ 0.32
ERCC3-201ENST00000285398 PPARGC1BQ86YN6 1023 aaKnown RBP17.02■□□□□ 0.32
ERCC3-201ENST00000285398 NCAPD3P42695 1498 aa17.01■□□□□ 0.31
ERCC3-201ENST00000285398 DNAJC5BQ9UF47 199 aa17■□□□□ 0.31
ERCC3-201ENST00000285398 CCDC88BA6NC98 1476 aa16.98■□□□□ 0.31
ERCC3-201ENST00000285398 HMGXB3Q12766 1538 aa16.92■□□□□ 0.3
ERCC3-201ENST00000285398 TRIM41Q8WV44 630 aa16.68■□□□□ 0.26
ERCC3-201ENST00000285398 ABCC8Q09428 1581 aa16.66■□□□□ 0.26
ERCC3-201ENST00000285398 TRIM26Q12899 539 aaPredicted RBP16.66■□□□□ 0.26
ERCC3-201ENST00000285398 NESP48681 1621 aa16.63■□□□□ 0.25
ERCC3-201ENST00000285398 ZEB1P37275 1124 aaPredicted RBP16.62■□□□□ 0.25
ERCC3-201ENST00000285398 CADPSQ9ULU8 1353 aa16.59■□□□□ 0.25
ERCC3-201ENST00000285398 CFTRP13569 1480 aa16.59■□□□□ 0.25
ERCC3-201ENST00000285398 LOC105371045A0A1W2PR82 267 aa16.57■□□□□ 0.24
ERCC3-201ENST00000285398 FAM9AQ8IZU1 332 aaPredicted RBP16.56■□□□□ 0.24
ERCC3-201ENST00000285398 MYT1Q01538 1121 aa16.55■□□□□ 0.24
ERCC3-201ENST00000285398 SCAF1Q9H7N4 1312 aaKnown RBP16.55■□□□□ 0.24
ERCC3-201ENST00000285398 EHMT2Q96KQ7 1210 aa16.49■□□□□ 0.23
ERCC3-201ENST00000285398 WRNQ14191 1432 aaPredicted RBP eCLIP16.48■□□□□ 0.23
ERCC3-201ENST00000285398 SLC24A1O60721 1099 aa16.44■□□□□ 0.22
ERCC3-201ENST00000285398 LAMC3Q9Y6N6 1575 aa16.43■□□□□ 0.22
ERCC3-201ENST00000285398 FANCD2Q9BXW9 1451 aa16.43■□□□□ 0.22
ERCC3-201ENST00000285398 SYNJ1O43426 1573 aa16.42■□□□□ 0.22
ERCC3-201ENST00000285398 PRDM2Q13029 1718 aa16.39■□□□□ 0.21
ERCC3-201ENST00000285398 CUX1P39880 1505 aa16.35■□□□□ 0.21
ERCC3-201ENST00000285398 PDS5BQ9NTI5 1447 aa16.34■□□□□ 0.21
ERCC3-201ENST00000285398 SOGA1O94964 1423 aa16.34■□□□□ 0.21
ERCC3-201ENST00000285398 RUSC2Q8N2Y8 1516 aa16.31■□□□□ 0.2
ERCC3-201ENST00000285398 CEP164Q9UPV0 1460 aa16.3■□□□□ 0.2
ERCC3-201ENST00000285398 KIF21AQ7Z4S6 1674 aa16.3■□□□□ 0.2
ERCC3-201ENST00000285398 TOP2BQ02880 1626 aa16.27■□□□□ 0.2
ERCC3-201ENST00000285398 URB2Q14146 1524 aaKnown RBP16.24■□□□□ 0.19
ERCC3-201ENST00000285398 ERCC6Q03468 1493 aa16.24■□□□□ 0.19
ERCC3-201ENST00000285398 BIVM-ERCC5R4GMW8 1640 aa16.23■□□□□ 0.19
ERCC3-201ENST00000285398 ACIN1Q9UKV3 1341 aaKnown RBP16.21■□□□□ 0.19
ERCC3-201ENST00000285398 FGD5Q6ZNL6 1462 aa16.21■□□□□ 0.19
ERCC3-201ENST00000285398 TOPBP1Q92547 1522 aa16.21■□□□□ 0.19
ERCC3-201ENST00000285398 RAD54L2Q9Y4B4 1467 aa16.19■□□□□ 0.18
ERCC3-201ENST00000285398 DNMBPQ6XZF7 1577 aa16.18■□□□□ 0.18
ERCC3-201ENST00000285398 POLA1P09884 1462 aaPredicted RBP16.15■□□□□ 0.18
ERCC3-201ENST00000285398 CSRNP3Q8WYN3 585 aa16.15■□□□□ 0.18
ERCC3-201ENST00000285398 MRC2Q9UBG0 1479 aa16.14■□□□□ 0.17
ERCC3-201ENST00000285398 CUX2O14529 1486 aa16.11■□□□□ 0.17
ERCC3-201ENST00000285398 NEUROD1Q13562 356 aa16.09■□□□□ 0.17
ERCC3-201ENST00000285398 TDRD9Q8NDG6 1382 aaKnown RBP16.08■□□□□ 0.17
ERCC3-201ENST00000285398 CENPBP07199 599 aaPredicted RBP16.08■□□□□ 0.16
ERCC3-201ENST00000285398 THOC2Q8NI27 1593 aaKnown RBP16.06■□□□□ 0.16
ERCC3-201ENST00000285398 WDR62O43379 1518 aa16.05■□□□□ 0.16
ERCC3-201ENST00000285398 KIF27Q86VH2 1401 aa16.05■□□□□ 0.16
ERCC3-201ENST00000285398 UBTFP17480 764 aaKnown RBP16.04■□□□□ 0.16
ERCC3-201ENST00000285398 GTF3C3Q9Y5Q9 886 aa16.04■□□□□ 0.16
ERCC3-201ENST00000285398 RANGAP1P46060 587 aaPredicted RBP16.03■□□□□ 0.16
ERCC3-201ENST00000285398 EEA1Q15075 1411 aa16.01■□□□□ 0.15
ERCC3-201ENST00000285398 ABCA10Q8WWZ4 1543 aa15.98■□□□□ 0.15
ERCC3-201ENST00000285398 AQRO60306 1485 aaKnown RBP eCLIP15.98■□□□□ 0.153e-7■■■■■ 38
ERCC3-201ENST00000285398 IGF1RP08069 1367 aa15.98■□□□□ 0.15
ERCC3-201ENST00000285398 RAPGEF2Q9Y4G8 1499 aa15.97■□□□□ 0.15
ERCC3-201ENST00000285398 ZNF608Q9ULD9 1512 aaPredicted RBP15.97■□□□□ 0.15
ERCC3-201ENST00000285398 TARBP1Q13395 1621 aaKnown RBP15.96■□□□□ 0.15
ERCC3-201ENST00000285398 WDR97A6NE52 1622 aa15.92■□□□□ 0.14
ERCC3-201ENST00000285398 DIEXFQ68CQ4 756 aaKnown RBP15.91■□□□□ 0.14
ERCC3-201ENST00000285398 IFT140Q96RY7 1462 aa15.91■□□□□ 0.14
ERCC3-201ENST00000285398 GAPVD1Q14C86 1478 aa15.9■□□□□ 0.14
ERCC3-201ENST00000285398 CARMIL1Q5VZK9 1371 aa15.89■□□□□ 0.13
ERCC3-201ENST00000285398 GOLGA3Q08378 1498 aa15.89■□□□□ 0.13
ERCC3-201ENST00000285398 PRXQ9BXM0 1461 aa15.88■□□□□ 0.13
ERCC3-201ENST00000285398 CCER1Q8TC90 406 aaPredicted RBP15.87■□□□□ 0.13
ERCC3-201ENST00000285398 ABCA5Q8WWZ7 1642 aa15.86■□□□□ 0.13
ERCC3-201ENST00000285398 KIF21BO75037 1637 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms