RNA–Protein interactions for RNA: ENST00000278412.6

SSRP1-201, Transcript of structure specific recognition protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSRP1, Length 2,819 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSRP1-201ENST00000278412 NISCHQ9Y2I1 1504 aa26.62■■□□□ 1.85
SSRP1-201ENST00000278412 CCDC180Q9P1Z9 1646 aa23.03■■□□□ 1.28
SSRP1-201ENST00000278412 DCAF8L2P0C7V8 631 aa22.37■■□□□ 1.17
SSRP1-201ENST00000278412 ZCCHC6Q5VYS8 1495 aaKnown RBP22.34■■□□□ 1.17
SSRP1-201ENST00000278412 ABCC9O60706 1549 aa22.24■■□□□ 1.15
SSRP1-201ENST00000278412 SHROOM4Q9ULL8 1493 aa22.11■■□□□ 1.13
SSRP1-201ENST00000278412 DCAF1Q9Y4B6 1507 aa21.78■■□□□ 1.08
SSRP1-201ENST00000278412 SCRIBQ14160 1630 aa21.52■■□□□ 1.04
SSRP1-201ENST00000278412 NACADO15069 1562 aa21.5■■□□□ 1.03
SSRP1-201ENST00000278412 MYO15BQ96JP2 1530 aa21.48■■□□□ 1.03
SSRP1-201ENST00000278412 RB1CC1Q8TDY2 1594 aa21.37■■□□□ 1.01
SSRP1-201ENST00000278412 SUPT5HO00267 1087 aaKnown RBP21.19■□□□□ 0.98
SSRP1-201ENST00000278412 UNC13AQ9UPW8 1703 aa21.13■□□□□ 0.97
SSRP1-201ENST00000278412 PABPN1Q86U42 306 aaKnown RBP eCLIP21.08■□□□□ 0.97
SSRP1-201ENST00000278412 CECR2Q9BXF3 1484 aa20.91■□□□□ 0.94
SSRP1-201ENST00000278412 BICRAQ9NZM4 1560 aa20.91■□□□□ 0.94
SSRP1-201ENST00000278412 RSF1Q96T23 1441 aaPredicted RBP20.72■□□□□ 0.91
SSRP1-201ENST00000278412 MROH2BQ7Z745 1585 aa20.71■□□□□ 0.91
SSRP1-201ENST00000278412 WIZO95785 1651 aa20.55■□□□□ 0.88
SSRP1-201ENST00000278412 BAZ1AQ9NRL2 1556 aaPredicted RBP20.48■□□□□ 0.87
SSRP1-201ENST00000278412 SMARCA4P51532 1647 aa20.48■□□□□ 0.87
SSRP1-201ENST00000278412 EIF4G1Q04637 1599 aaKnown RBP20.24■□□□□ 0.83
SSRP1-201ENST00000278412 ATAD2BQ9ULI0 1458 aa20.18■□□□□ 0.82
SSRP1-201ENST00000278412 TOP2AP11388 1531 aaKnown RBP20.15■□□□□ 0.82
SSRP1-201ENST00000278412 CHIC1Q5VXU3 224 aa20.12■□□□□ 0.81
SSRP1-201ENST00000278412 PEG3Q9GZU2 1588 aa20.09■□□□□ 0.81
SSRP1-201ENST00000278412 CCDC88BA6NC98 1476 aa20.07■□□□□ 0.8
SSRP1-201ENST00000278412 BAZ1BQ9UIG0 1483 aaKnown RBP20.05■□□□□ 0.8
SSRP1-201ENST00000278412 SMARCA2P51531 1590 aa20.05■□□□□ 0.8
SSRP1-201ENST00000278412 CC2D2AQ9P2K1 1620 aa20■□□□□ 0.79
SSRP1-201ENST00000278412 NCAPD3P42695 1498 aa19.92■□□□□ 0.78
SSRP1-201ENST00000278412 DNAJC5BQ9UF47 199 aa19.92■□□□□ 0.78
SSRP1-201ENST00000278412 HMGXB3Q12766 1538 aa19.83■□□□□ 0.77
SSRP1-201ENST00000278412 ABCC8Q09428 1581 aa19.77■□□□□ 0.76
SSRP1-201ENST00000278412 TRIM41Q8WV44 630 aa19.73■□□□□ 0.75
SSRP1-201ENST00000278412 FAM9AQ8IZU1 332 aaPredicted RBP19.63■□□□□ 0.73
SSRP1-201ENST00000278412 EHMT2Q96KQ7 1210 aa19.56■□□□□ 0.72
SSRP1-201ENST00000278412 NESP48681 1621 aa19.55■□□□□ 0.72
SSRP1-201ENST00000278412 LOC105371045A0A1W2PR82 267 aa19.55■□□□□ 0.72
SSRP1-201ENST00000278412 CFTRP13569 1480 aa19.51■□□□□ 0.71
SSRP1-201ENST00000278412 CADPSQ9ULU8 1353 aa19.47■□□□□ 0.71
SSRP1-201ENST00000278412 SYNJ1O43426 1573 aa19.47■□□□□ 0.71
SSRP1-201ENST00000278412 WRNQ14191 1432 aaPredicted RBP eCLIP19.46■□□□□ 0.71
SSRP1-201ENST00000278412 SOGA1O94964 1423 aa19.38■□□□□ 0.69
SSRP1-201ENST00000278412 RUSC2Q8N2Y8 1516 aa19.38■□□□□ 0.69
SSRP1-201ENST00000278412 CUX1P39880 1505 aa19.33■□□□□ 0.69
SSRP1-201ENST00000278412 FANCD2Q9BXW9 1451 aa19.3■□□□□ 0.68
SSRP1-201ENST00000278412 PRDM2Q13029 1718 aa19.29■□□□□ 0.68
SSRP1-201ENST00000278412 TOP2BQ02880 1626 aa19.25■□□□□ 0.67
SSRP1-201ENST00000278412 LAMC3Q9Y6N6 1575 aa19.2■□□□□ 0.66
SSRP1-201ENST00000278412 BIVM-ERCC5R4GMW8 1640 aa19.19■□□□□ 0.66
SSRP1-201ENST00000278412 KIF21AQ7Z4S6 1674 aa19.18■□□□□ 0.66
SSRP1-201ENST00000278412 CEP164Q9UPV0 1460 aa19.13■□□□□ 0.65
SSRP1-201ENST00000278412 URB2Q14146 1524 aaKnown RBP19.12■□□□□ 0.65
SSRP1-201ENST00000278412 FGD5Q6ZNL6 1462 aa19.11■□□□□ 0.65
SSRP1-201ENST00000278412 CSRNP3Q8WYN3 585 aa19.09■□□□□ 0.65
SSRP1-201ENST00000278412 PDS5BQ9NTI5 1447 aa19.09■□□□□ 0.65
SSRP1-201ENST00000278412 TOPBP1Q92547 1522 aa19.09■□□□□ 0.65
SSRP1-201ENST00000278412 RAD54L2Q9Y4B4 1467 aa19.08■□□□□ 0.64
SSRP1-201ENST00000278412 DNMBPQ6XZF7 1577 aa19.03■□□□□ 0.64
SSRP1-201ENST00000278412 POLA1P09884 1462 aaPredicted RBP19.02■□□□□ 0.64
SSRP1-201ENST00000278412 CUX2O14529 1486 aa18.99■□□□□ 0.63
SSRP1-201ENST00000278412 ERCC6Q03468 1493 aa18.94■□□□□ 0.62
SSRP1-201ENST00000278412 UBTFP17480 764 aaKnown RBP18.94■□□□□ 0.62
SSRP1-201ENST00000278412 EEA1Q15075 1411 aa18.94■□□□□ 0.62
SSRP1-201ENST00000278412 RAPGEF2Q9Y4G8 1499 aa18.93■□□□□ 0.62
SSRP1-201ENST00000278412 RANGAP1P46060 587 aaPredicted RBP18.93■□□□□ 0.62
SSRP1-201ENST00000278412 KIF27Q86VH2 1401 aa18.91■□□□□ 0.62
SSRP1-201ENST00000278412 TDRD9Q8NDG6 1382 aaKnown RBP18.9■□□□□ 0.62
SSRP1-201ENST00000278412 MRC2Q9UBG0 1479 aa18.89■□□□□ 0.62
SSRP1-201ENST00000278412 IGF1RP08069 1367 aa18.85■□□□□ 0.61
SSRP1-201ENST00000278412 GOLGA3Q08378 1498 aa18.84■□□□□ 0.61
SSRP1-201ENST00000278412 ABCA10Q8WWZ4 1543 aa18.83■□□□□ 0.6
SSRP1-201ENST00000278412 PRXQ9BXM0 1461 aa18.81■□□□□ 0.6
SSRP1-201ENST00000278412 KIF21BO75037 1637 aa18.81■□□□□ 0.6
SSRP1-201ENST00000278412 THOC2Q8NI27 1593 aaKnown RBP18.8■□□□□ 0.6
SSRP1-201ENST00000278412 PPARGC1BQ86YN6 1023 aaKnown RBP18.78■□□□□ 0.6
SSRP1-201ENST00000278412 TARBP1Q13395 1621 aaKnown RBP18.78■□□□□ 0.6
SSRP1-201ENST00000278412 CEP162Q5TB80 1403 aa18.78■□□□□ 0.6
SSRP1-201ENST00000278412 WDR62O43379 1518 aa18.78■□□□□ 0.6
SSRP1-201ENST00000278412 WDR97A6NE52 1622 aa18.78■□□□□ 0.6
SSRP1-201ENST00000278412 AQRO60306 1485 aaKnown RBP eCLIP18.78■□□□□ 0.68e-8■■■■■ 33.8
SSRP1-201ENST00000278412 ZNF608Q9ULD9 1512 aaPredicted RBP18.78■□□□□ 0.6
SSRP1-201ENST00000278412 TNIKQ9UKE5 1360 aa18.77■□□□□ 0.59
SSRP1-201ENST00000278412 CARMIL1Q5VZK9 1371 aa18.73■□□□□ 0.59
SSRP1-201ENST00000278412 GAPVD1Q14C86 1478 aa18.7■□□□□ 0.58
SSRP1-201ENST00000278412 ABCA5Q8WWZ7 1642 aa18.7■□□□□ 0.58
SSRP1-201ENST00000278412 TTBK1Q5TCY1 1321 aaPredicted RBP18.66■□□□□ 0.58
SSRP1-201ENST00000278412 ERICH3Q5RHP9 1530 aa18.65■□□□□ 0.58
SSRP1-201ENST00000278412 CLIP1P30622 1438 aa18.62■□□□□ 0.57
SSRP1-201ENST00000278412 IFT140Q96RY7 1462 aa18.61■□□□□ 0.57
SSRP1-201ENST00000278412 PBRM1Q86U86 1689 aa18.58■□□□□ 0.56
SSRP1-201ENST00000278412 EIF4G3O43432 1585 aaKnown RBP18.57■□□□□ 0.56
SSRP1-201ENST00000278412 P3H3Q8IVL6 736 aa18.55■□□□□ 0.56
SSRP1-201ENST00000278412 PCGF6Q9BYE7 350 aa18.54■□□□□ 0.56
SSRP1-201ENST00000278412 CUL7Q14999 1698 aa18.52■□□□□ 0.55
SSRP1-201ENST00000278412 SNAPC4Q5SXM2 1469 aa18.51■□□□□ 0.55
SSRP1-201ENST00000278412 GRIN2BQ13224 1484 aa18.5■□□□□ 0.55
SSRP1-201ENST00000278412 ARAP1Q96P48 1450 aa18.5■□□□□ 0.55
SSRP1-201ENST00000278412 FBLN2P98095 1184 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 98.3 ms