RNA–Protein interactions for RNA: ENST00000275954.3

TMEM47-201, Transcript of transmembrane protein 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TMEM47, Length 4,054 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM47-201ENST00000275954 NISCHQ9Y2I1 1504 aa26.81■■□□□ 1.88
TMEM47-201ENST00000275954 DCAF8L2P0C7V8 631 aa26.57■■□□□ 1.84
TMEM47-201ENST00000275954 SHROOM4Q9ULL8 1493 aa24.98■■□□□ 1.59
TMEM47-201ENST00000275954 SUPT5HO00267 1087 aaKnown RBP24.77■■□□□ 1.56
TMEM47-201ENST00000275954 EHMT2Q96KQ7 1210 aa23.82■■□□□ 1.4
TMEM47-201ENST00000275954 ABCC9O60706 1549 aa23.77■■□□□ 1.4
TMEM47-201ENST00000275954 PABPN1Q86U42 306 aaKnown RBP eCLIP23.4■■□□□ 1.34
TMEM47-201ENST00000275954 FAM9AQ8IZU1 332 aaPredicted RBP23.23■■□□□ 1.31
TMEM47-201ENST00000275954 PCGF6Q9BYE7 350 aa23.08■■□□□ 1.29
TMEM47-201ENST00000275954 RANGAP1P46060 587 aaPredicted RBP22.86■■□□□ 1.25
TMEM47-201ENST00000275954 TRIM41Q8WV44 630 aa22.8■■□□□ 1.24
TMEM47-201ENST00000275954 TTBK1Q5TCY1 1321 aaPredicted RBP22.77■■□□□ 1.24
TMEM47-201ENST00000275954 CHIC1Q5VXU3 224 aa22.74■■□□□ 1.23
TMEM47-201ENST00000275954 LOC105371045A0A1W2PR82 267 aa22.65■■□□□ 1.22
TMEM47-201ENST00000275954 PPARGC1BQ86YN6 1023 aaKnown RBP22.47■■□□□ 1.19
TMEM47-201ENST00000275954 SCRIBQ14160 1630 aa22.28■■□□□ 1.16
TMEM47-201ENST00000275954 APLP2Q06481 763 aa22.25■■□□□ 1.15
TMEM47-201ENST00000275954 UBTFP17480 764 aaKnown RBP22.22■■□□□ 1.15
TMEM47-201ENST00000275954 ATP1B4Q9UN42 357 aaPredicted RBP22.2■■□□□ 1.14
TMEM47-201ENST00000275954 ZCCHC6Q5VYS8 1495 aaKnown RBP22.14■■□□□ 1.14
TMEM47-201ENST00000275954 HRCP23327 699 aa22.13■■□□□ 1.13
TMEM47-201ENST00000275954 CCER1Q8TC90 406 aaPredicted RBP22.1■■□□□ 1.13
TMEM47-201ENST00000275954 CCDC180Q9P1Z9 1646 aa22.08■■□□□ 1.13
TMEM47-201ENST00000275954 TRIM26Q12899 539 aaPredicted RBP22.08■■□□□ 1.13
TMEM47-201ENST00000275954 ZEB1P37275 1124 aaPredicted RBP21.9■■□□□ 1.1
TMEM47-201ENST00000275954 FBLN2P98095 1184 aa21.71■■□□□ 1.07
TMEM47-201ENST00000275954 RB1CC1Q8TDY2 1594 aa21.66■■□□□ 1.06
TMEM47-201ENST00000275954 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.65■■□□□ 1.06
TMEM47-201ENST00000275954 HNRNPUL2Q1KMD3 747 aaKnown RBP21.6■■□□□ 1.05
TMEM47-201ENST00000275954 MYO15BQ96JP2 1530 aa21.56■■□□□ 1.04
TMEM47-201ENST00000275954 CECR2Q9BXF3 1484 aa21.53■■□□□ 1.04
TMEM47-201ENST00000275954 ITGAEP38570 1179 aa21.52■■□□□ 1.04
TMEM47-201ENST00000275954 YTHDC1Q96MU7 727 aaKnown RBP21.51■■□□□ 1.03
TMEM47-201ENST00000275954 ARID3CA6NKF2 412 aa21.47■■□□□ 1.03
TMEM47-201ENST00000275954 NACADO15069 1562 aa21.44■■□□□ 1.02
TMEM47-201ENST00000275954 CENPBP07199 599 aaPredicted RBP21.4■■□□□ 1.02
TMEM47-201ENST00000275954 P3H3Q8IVL6 736 aa21.4■■□□□ 1.02
TMEM47-201ENST00000275954 RSF1Q96T23 1441 aaPredicted RBP21.32■■□□□ 1
TMEM47-201ENST00000275954 CSRNP3Q8WYN3 585 aa21.24■□□□□ 0.99
TMEM47-201ENST00000275954 MYT1LQ9UL68 1186 aa21.19■□□□□ 0.98
TMEM47-201ENST00000275954 DIEXFQ68CQ4 756 aaKnown RBP21.11■□□□□ 0.97
TMEM47-201ENST00000275954 DCAF1Q9Y4B6 1507 aa21.09■□□□□ 0.97
TMEM47-201ENST00000275954 PELP1Q8IZL8 1130 aaKnown RBP21.06■□□□□ 0.96
TMEM47-201ENST00000275954 MROH2BQ7Z745 1585 aa21.05■□□□□ 0.96
TMEM47-201ENST00000275954 BAZ1BQ9UIG0 1483 aaKnown RBP21.03■□□□□ 0.96
TMEM47-201ENST00000275954 DNAJC5BQ9UF47 199 aa21■□□□□ 0.95
TMEM47-201ENST00000275954 FAM50AQ14320 339 aaKnown RBP20.95■□□□□ 0.94
TMEM47-201ENST00000275954 NEUROD1Q13562 356 aa20.81■□□□□ 0.92
TMEM47-201ENST00000275954 BAZ1AQ9NRL2 1556 aaPredicted RBP20.81■□□□□ 0.92
TMEM47-201ENST00000275954 CNGB1Q14028 1251 aaPredicted RBP20.8■□□□□ 0.92
TMEM47-201ENST00000275954 CHMP7Q8WUX9 453 aaPredicted RBP20.78■□□□□ 0.92
TMEM47-201ENST00000275954 ERCC6Q03468 1493 aa20.77■□□□□ 0.92
TMEM47-201ENST00000275954 WIZO95785 1651 aa20.74■□□□□ 0.91
TMEM47-201ENST00000275954 POLR3GLQ9BT43 218 aa20.72■□□□□ 0.91
TMEM47-201ENST00000275954 ZNF316A6NFI3 1004 aaPredicted RBP20.72■□□□□ 0.91
TMEM47-201ENST00000275954 ZNF777Q9ULD5 760 aaPredicted RBP20.69■□□□□ 0.9
TMEM47-201ENST00000275954 GTF3C3Q9Y5Q9 886 aa20.68■□□□□ 0.9
TMEM47-201ENST00000275954 CCDC88BA6NC98 1476 aa20.66■□□□□ 0.9
TMEM47-201ENST00000275954 NEFLP07196 543 aa20.64■□□□□ 0.89
TMEM47-201ENST00000275954 PLPPR3Q6T4P5 718 aa20.64■□□□□ 0.89
TMEM47-201ENST00000275954 WRNQ14191 1432 aaPredicted RBP eCLIP20.62■□□□□ 0.89
TMEM47-201ENST00000275954 CEP162Q5TB80 1403 aa20.6■□□□□ 0.89
TMEM47-201ENST00000275954 TRIM52Q96A61 297 aa20.58■□□□□ 0.89
TMEM47-201ENST00000275954 ABCC8Q09428 1581 aa20.58■□□□□ 0.88
TMEM47-201ENST00000275954 ATAD2BQ9ULI0 1458 aa20.57■□□□□ 0.88
TMEM47-201ENST00000275954 TDRD9Q8NDG6 1382 aaKnown RBP20.56■□□□□ 0.88
TMEM47-201ENST00000275954 SOGA1O94964 1423 aa20.56■□□□□ 0.88
TMEM47-201ENST00000275954 CLIP1P30622 1438 aa20.53■□□□□ 0.88
TMEM47-201ENST00000275954 ACIN1Q9UKV3 1341 aaKnown RBP20.5■□□□□ 0.87
TMEM47-201ENST00000275954 KCNH8Q96L42 1107 aa20.5■□□□□ 0.87
TMEM47-201ENST00000275954 SENP3Q9H4L4 574 aaPredicted RBP20.41■□□□□ 0.86
TMEM47-201ENST00000275954 TNIKQ9UKE5 1360 aa20.41■□□□□ 0.86
TMEM47-201ENST00000275954 CHIC2Q9UKJ5 165 aa20.4■□□□□ 0.86
TMEM47-201ENST00000275954 GOLGA3Q08378 1498 aa20.39■□□□□ 0.85
TMEM47-201ENST00000275954 SMARCA4P51532 1647 aa20.39■□□□□ 0.85
TMEM47-201ENST00000275954 BCANQ96GW7 911 aa20.38■□□□□ 0.85
TMEM47-201ENST00000275954 CADPSQ9ULU8 1353 aa20.37■□□□□ 0.85
TMEM47-201ENST00000275954 SMARCA2P51531 1590 aa20.37■□□□□ 0.85
TMEM47-201ENST00000275954 ZNF326Q5BKZ1 582 aaKnown RBP20.36■□□□□ 0.85
TMEM47-201ENST00000275954 EIF4G1Q04637 1599 aaKnown RBP20.35■□□□□ 0.85
TMEM47-201ENST00000275954 EEA1Q15075 1411 aa20.35■□□□□ 0.85
TMEM47-201ENST00000275954 CUX2O14529 1486 aa20.34■□□□□ 0.85
TMEM47-201ENST00000275954 NESP48681 1621 aa20.33■□□□□ 0.85
TMEM47-201ENST00000275954 NPM1P06748 294 aaKnown RBP eCLIP20.32■□□□□ 0.84
TMEM47-201ENST00000275954 ERICH6Q7L0X2 663 aa20.31■□□□□ 0.84
TMEM47-201ENST00000275954 MIER1Q8N108 512 aa20.31■□□□□ 0.84
TMEM47-201ENST00000275954 SCAF1Q9H7N4 1312 aaKnown RBP20.3■□□□□ 0.84
TMEM47-201ENST00000275954 HIRIP3Q9BW71 556 aaPredicted RBP20.28■□□□□ 0.84
TMEM47-201ENST00000275954 DDX10Q13206 875 aaKnown RBP20.25■□□□□ 0.83
TMEM47-201ENST00000275954 PDS5BQ9NTI5 1447 aa20.25■□□□□ 0.83
TMEM47-201ENST00000275954 KIF27Q86VH2 1401 aa20.23■□□□□ 0.83
TMEM47-201ENST00000275954 ANP32CO43423 234 aa20.22■□□□□ 0.83
TMEM47-201ENST00000275954 CEP164Q9UPV0 1460 aa20.22■□□□□ 0.83
TMEM47-201ENST00000275954 BICRAQ9NZM4 1560 aa20.21■□□□□ 0.83
TMEM47-201ENST00000275954 RUSC2Q8N2Y8 1516 aa20.21■□□□□ 0.83
TMEM47-201ENST00000275954 TOP2AP11388 1531 aaKnown RBP20.2■□□□□ 0.82
TMEM47-201ENST00000275954 CC2D2AQ9P2K1 1620 aa20.17■□□□□ 0.82
TMEM47-201ENST00000275954 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.17■□□□□ 0.82
TMEM47-201ENST00000275954 CARMIL1Q5VZK9 1371 aa20.16■□□□□ 0.82
TMEM47-201ENST00000275954 CDK11AQ9UQ88 783 aaPredicted RBP20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 560.9 ms