RNA–Protein interactions for RNA: ENST00000275560.3

SSC4D-201, Transcript of scavenger receptor cysteine rich family member with 4 domains, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSC4D, Length 2,801 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSC4D-201ENST00000275560 NISCHQ9Y2I1 1504 aa36.61■■■■□ 3.45
SSC4D-201ENST00000275560 SHROOM4Q9ULL8 1493 aa32.33■■■□□ 2.77
SSC4D-201ENST00000275560 SUPT5HO00267 1087 aaKnown RBP31.97■■■□□ 2.71
SSC4D-201ENST00000275560 HRCP23327 699 aa31.36■■■□□ 2.61
SSC4D-201ENST00000275560 MYO15BQ96JP2 1530 aa31.36■■■□□ 2.61
SSC4D-201ENST00000275560 CHIC1Q5VXU3 224 aa31.17■■■□□ 2.58
SSC4D-201ENST00000275560 PCGF6Q9BYE7 350 aa31.11■■■□□ 2.57
SSC4D-201ENST00000275560 ZCCHC6Q5VYS8 1495 aaKnown RBP31.05■■■□□ 2.56
SSC4D-201ENST00000275560 PPARGC1BQ86YN6 1023 aaKnown RBP30.98■■■□□ 2.55
SSC4D-201ENST00000275560 DCAF8L2P0C7V8 631 aa30.8■■■□□ 2.52
SSC4D-201ENST00000275560 LOC105371045A0A1W2PR82 267 aa30.55■■■□□ 2.48
SSC4D-201ENST00000275560 CCDC180Q9P1Z9 1646 aa30.53■■■□□ 2.48
SSC4D-201ENST00000275560 DCAF1Q9Y4B6 1507 aa30.31■■■□□ 2.44
SSC4D-201ENST00000275560 TRIM26Q12899 539 aaPredicted RBP30.06■■■□□ 2.4
SSC4D-201ENST00000275560 FAM9AQ8IZU1 332 aaPredicted RBP29.63■■■□□ 2.33
SSC4D-201ENST00000275560 EHMT2Q96KQ7 1210 aa29.62■■■□□ 2.33
SSC4D-201ENST00000275560 ZEB1P37275 1124 aaPredicted RBP29.51■■■□□ 2.31
SSC4D-201ENST00000275560 TRIM41Q8WV44 630 aa29.5■■■□□ 2.31
SSC4D-201ENST00000275560 SCAF1Q9H7N4 1312 aaKnown RBP29.5■■■□□ 2.31
SSC4D-201ENST00000275560 ABCC9O60706 1549 aa29.44■■■□□ 2.3
SSC4D-201ENST00000275560 RSF1Q96T23 1441 aaPredicted RBP29.35■■■□□ 2.29
SSC4D-201ENST00000275560 RB1CC1Q8TDY2 1594 aa29.24■■■□□ 2.27
SSC4D-201ENST00000275560 PELP1Q8IZL8 1130 aaKnown RBP29.24■■■□□ 2.27
SSC4D-201ENST00000275560 SCRIBQ14160 1630 aa29.23■■■□□ 2.27
SSC4D-201ENST00000275560 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.04■■■□□ 2.24
SSC4D-201ENST00000275560 NEUROD1Q13562 356 aa28.88■■■□□ 2.21
SSC4D-201ENST00000275560 CCER1Q8TC90 406 aaPredicted RBP28.87■■■□□ 2.21
SSC4D-201ENST00000275560 ACIN1Q9UKV3 1341 aaKnown RBP28.83■■■□□ 2.21
SSC4D-201ENST00000275560 TTBK1Q5TCY1 1321 aaPredicted RBP28.79■■■□□ 2.2
SSC4D-201ENST00000275560 CECR2Q9BXF3 1484 aa28.78■■■□□ 2.2
SSC4D-201ENST00000275560 MROH2BQ7Z745 1585 aa28.66■■■□□ 2.18
SSC4D-201ENST00000275560 GTF3C3Q9Y5Q9 886 aa28.65■■■□□ 2.18
SSC4D-201ENST00000275560 DIEXFQ68CQ4 756 aaKnown RBP28.65■■■□□ 2.18
SSC4D-201ENST00000275560 WIZO95785 1651 aa28.58■■■□□ 2.17
SSC4D-201ENST00000275560 CENPBP07199 599 aaPredicted RBP28.44■■■□□ 2.14
SSC4D-201ENST00000275560 ABCC8Q09428 1581 aa28.3■■■□□ 2.12
SSC4D-201ENST00000275560 YTHDC1Q96MU7 727 aaKnown RBP28.29■■■□□ 2.12
SSC4D-201ENST00000275560 EIF4G1Q04637 1599 aaKnown RBP28.27■■■□□ 2.12
SSC4D-201ENST00000275560 CCDC88BA6NC98 1476 aa28.26■■■□□ 2.11
SSC4D-201ENST00000275560 CEP162Q5TB80 1403 aa28.24■■■□□ 2.11
SSC4D-201ENST00000275560 BAZ1AQ9NRL2 1556 aaPredicted RBP28.22■■■□□ 2.11
SSC4D-201ENST00000275560 WRNQ14191 1432 aaPredicted RBP eCLIP28.17■■■□□ 2.1
SSC4D-201ENST00000275560 ZNF316A6NFI3 1004 aaPredicted RBP28.16■■■□□ 2.1
SSC4D-201ENST00000275560 SOGA1O94964 1423 aa28.15■■■□□ 2.1
SSC4D-201ENST00000275560 NACADO15069 1562 aa28.14■■■□□ 2.1
SSC4D-201ENST00000275560 UBTFP17480 764 aaKnown RBP28.08■■■□□ 2.09
SSC4D-201ENST00000275560 RUSC2Q8N2Y8 1516 aa28.04■■■□□ 2.08
SSC4D-201ENST00000275560 MIER1Q8N108 512 aa28.03■■■□□ 2.08
SSC4D-201ENST00000275560 TNIKQ9UKE5 1360 aa28■■■□□ 2.07
SSC4D-201ENST00000275560 HNRNPUL2Q1KMD3 747 aaKnown RBP27.99■■■□□ 2.07
SSC4D-201ENST00000275560 CSRNP3Q8WYN3 585 aa27.95■■■□□ 2.06
SSC4D-201ENST00000275560 TOP2AP11388 1531 aaKnown RBP27.9■■■□□ 2.06
SSC4D-201ENST00000275560 SMARCA2P51531 1590 aa27.87■■■□□ 2.05
SSC4D-201ENST00000275560 MYT1Q01538 1121 aa27.82■■■□□ 2.04
SSC4D-201ENST00000275560 SMARCA4P51532 1647 aa27.75■■■□□ 2.03
SSC4D-201ENST00000275560 GOLGA3Q08378 1498 aa27.73■■■□□ 2.03
SSC4D-201ENST00000275560 RANGAP1P46060 587 aaPredicted RBP27.7■■■□□ 2.02
SSC4D-201ENST00000275560 EEA1Q15075 1411 aa27.68■■■□□ 2.02
SSC4D-201ENST00000275560 CLIP1P30622 1438 aa27.55■■■□□ 2
SSC4D-201ENST00000275560 APLP2Q06481 763 aa27.47■■□□□ 1.99
SSC4D-201ENST00000275560 CEP164Q9UPV0 1460 aa27.47■■□□□ 1.99
SSC4D-201ENST00000275560 VPS8Q8N3P4 1428 aa27.44■■□□□ 1.98
SSC4D-201ENST00000275560 SYNJ1O43426 1573 aa27.43■■□□□ 1.98
SSC4D-201ENST00000275560 UNC13AQ9UPW8 1703 aa27.4■■□□□ 1.98
SSC4D-201ENST00000275560 PABPN1Q86U42 306 aaKnown RBP eCLIP27.39■■□□□ 1.97
SSC4D-201ENST00000275560 RAPGEF2Q9Y4G8 1499 aa27.37■■□□□ 1.97
SSC4D-201ENST00000275560 KIF21BO75037 1637 aa27.36■■□□□ 1.97
SSC4D-201ENST00000275560 SUPT16HQ9Y5B9 1047 aaKnown RBP27.35■■□□□ 1.97
SSC4D-201ENST00000275560 DHX57Q6P158 1386 aaKnown RBP27.27■■□□□ 1.96
SSC4D-201ENST00000275560 KANK4Q5T7N3 995 aaPredicted RBP27.18■■□□□ 1.94
SSC4D-201ENST00000275560 BAZ1BQ9UIG0 1483 aaKnown RBP27.16■■□□□ 1.94
SSC4D-201ENST00000275560 KCNH8Q96L42 1107 aa27.13■■□□□ 1.93
SSC4D-201ENST00000275560 TSHZ2Q9NRE2 1034 aa27.11■■□□□ 1.93
SSC4D-201ENST00000275560 ITGAEP38570 1179 aa27.07■■□□□ 1.92
SSC4D-201ENST00000275560 CLSPNQ9HAW4 1339 aa27.06■■□□□ 1.92
SSC4D-201ENST00000275560 ARAP1Q96P48 1450 aa27.01■■□□□ 1.91
SSC4D-201ENST00000275560 BCANQ96GW7 911 aa27■■□□□ 1.91
SSC4D-201ENST00000275560 BICRAQ9NZM4 1560 aa27■■□□□ 1.91
SSC4D-201ENST00000275560 PEG3Q9GZU2 1588 aa26.97■■□□□ 1.91
SSC4D-201ENST00000275560 ATAD2BQ9ULI0 1458 aa26.91■■□□□ 1.9
SSC4D-201ENST00000275560 TOP2BQ02880 1626 aa26.86■■□□□ 1.89
SSC4D-201ENST00000275560 RRBP1Q9P2E9 1410 aaKnown RBP26.85■■□□□ 1.89
SSC4D-201ENST00000275560 ANP32EQ9BTT0 268 aa26.84■■□□□ 1.89
SSC4D-201ENST00000275560 PRXQ9BXM0 1461 aa26.83■■□□□ 1.89
SSC4D-201ENST00000275560 CCNB3Q8WWL7 1395 aa26.81■■□□□ 1.88
SSC4D-201ENST00000275560 FKBP8Q14318 412 aa26.78■■□□□ 1.88
SSC4D-201ENST00000275560 DDX10Q13206 875 aaKnown RBP26.77■■□□□ 1.88
SSC4D-201ENST00000275560 ERICH3Q5RHP9 1530 aa26.76■■□□□ 1.87
SSC4D-201ENST00000275560 RAB3GAP2Q9H2M9 1393 aa26.75■■□□□ 1.87
SSC4D-201ENST00000275560 HIRIP3Q9BW71 556 aaPredicted RBP26.72■■□□□ 1.87
SSC4D-201ENST00000275560 CUX2O14529 1486 aa26.72■■□□□ 1.87
SSC4D-201ENST00000275560 SIN3AQ96ST3 1273 aa26.71■■□□□ 1.87
SSC4D-201ENST00000275560 MAPKBP1O60336 1514 aa26.7■■□□□ 1.86
SSC4D-201ENST00000275560 BIVM-ERCC5R4GMW8 1640 aa26.69■■□□□ 1.86
SSC4D-201ENST00000275560 ARHGAP35Q9NRY4 1499 aa26.67■■□□□ 1.86
SSC4D-201ENST00000275560 WDR97A6NE52 1622 aa26.62■■□□□ 1.85
SSC4D-201ENST00000275560 TRIM52Q96A61 297 aa26.61■■□□□ 1.85
SSC4D-201ENST00000275560 CUX1P39880 1505 aa26.59■■□□□ 1.85
SSC4D-201ENST00000275560 KIF27Q86VH2 1401 aa26.56■■□□□ 1.84
SSC4D-201ENST00000275560 FAM50AQ14320 339 aaKnown RBP26.54■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms