RNA–Protein interactions for RNA: ENST00000274327.11

TRIM23-202, Transcript of tripartite motif containing 23, humanhuman

TSL 1 (best) BASIC

Gene TRIM23, Length 1,829 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM23-202ENST00000274327 NISCHQ9Y2I1 1504 aa33.15■■■□□ 2.9
TRIM23-202ENST00000274327 CCDC180Q9P1Z9 1646 aa28.96■■■□□ 2.23
TRIM23-202ENST00000274327 ZCCHC6Q5VYS8 1495 aaKnown RBP27.85■■■□□ 2.05
TRIM23-202ENST00000274327 DCAF1Q9Y4B6 1507 aa27.45■■□□□ 1.98
TRIM23-202ENST00000274327 ABCC9O60706 1549 aa27.31■■□□□ 1.96
TRIM23-202ENST00000274327 DCAF8L2P0C7V8 631 aa27.22■■□□□ 1.95
TRIM23-202ENST00000274327 MYO15BQ96JP2 1530 aa27.14■■□□□ 1.94
TRIM23-202ENST00000274327 NACADO15069 1562 aa26.95■■□□□ 1.9
TRIM23-202ENST00000274327 SHROOM4Q9ULL8 1493 aa26.9■■□□□ 1.9
TRIM23-202ENST00000274327 RB1CC1Q8TDY2 1594 aa26.71■■□□□ 1.87
TRIM23-202ENST00000274327 SCRIBQ14160 1630 aa26.56■■□□□ 1.84
TRIM23-202ENST00000274327 UNC13AQ9UPW8 1703 aa26.23■■□□□ 1.79
TRIM23-202ENST00000274327 BICRAQ9NZM4 1560 aa25.94■■□□□ 1.74
TRIM23-202ENST00000274327 SUPT5HO00267 1087 aaKnown RBP25.86■■□□□ 1.73
TRIM23-202ENST00000274327 CECR2Q9BXF3 1484 aa25.73■■□□□ 1.71
TRIM23-202ENST00000274327 PABPN1Q86U42 306 aaKnown RBP eCLIP25.71■■□□□ 1.71
TRIM23-202ENST00000274327 RSF1Q96T23 1441 aaPredicted RBP25.69■■□□□ 1.7
TRIM23-202ENST00000274327 MROH2BQ7Z745 1585 aa25.6■■□□□ 1.69
TRIM23-202ENST00000274327 BAZ1AQ9NRL2 1556 aaPredicted RBP25.59■■□□□ 1.69
TRIM23-202ENST00000274327 SMARCA4P51532 1647 aa25.49■■□□□ 1.67
TRIM23-202ENST00000274327 WIZO95785 1651 aa25.39■■□□□ 1.66
TRIM23-202ENST00000274327 PEG3Q9GZU2 1588 aa25.22■■□□□ 1.63
TRIM23-202ENST00000274327 TOP2AP11388 1531 aaKnown RBP25.14■■□□□ 1.62
TRIM23-202ENST00000274327 EIF4G1Q04637 1599 aaKnown RBP25.13■■□□□ 1.61
TRIM23-202ENST00000274327 ATAD2BQ9ULI0 1458 aa25.07■■□□□ 1.6
TRIM23-202ENST00000274327 SMARCA2P51531 1590 aa25.05■■□□□ 1.6
TRIM23-202ENST00000274327 BAZ1BQ9UIG0 1483 aaKnown RBP24.9■■□□□ 1.58
TRIM23-202ENST00000274327 CCDC88BA6NC98 1476 aa24.86■■□□□ 1.57
TRIM23-202ENST00000274327 NCAPD3P42695 1498 aa24.86■■□□□ 1.57
TRIM23-202ENST00000274327 HMGXB3Q12766 1538 aa24.84■■□□□ 1.57
TRIM23-202ENST00000274327 CHIC1Q5VXU3 224 aa24.81■■□□□ 1.56
TRIM23-202ENST00000274327 CC2D2AQ9P2K1 1620 aa24.76■■□□□ 1.55
TRIM23-202ENST00000274327 TRIM41Q8WV44 630 aa24.34■■□□□ 1.49
TRIM23-202ENST00000274327 ABCC8Q09428 1581 aa24.31■■□□□ 1.48
TRIM23-202ENST00000274327 CFTRP13569 1480 aa24.29■■□□□ 1.48
TRIM23-202ENST00000274327 PRDM2Q13029 1718 aa24.24■■□□□ 1.47
TRIM23-202ENST00000274327 CADPSQ9ULU8 1353 aa24.2■■□□□ 1.46
TRIM23-202ENST00000274327 WRNQ14191 1432 aaPredicted RBP eCLIP24.16■■□□□ 1.46
TRIM23-202ENST00000274327 DNAJC5BQ9UF47 199 aa24.1■■□□□ 1.45
TRIM23-202ENST00000274327 SYNJ1O43426 1573 aa24.09■■□□□ 1.45
TRIM23-202ENST00000274327 LAMC3Q9Y6N6 1575 aa24.02■■□□□ 1.44
TRIM23-202ENST00000274327 TOP2BQ02880 1626 aa24.01■■□□□ 1.43
TRIM23-202ENST00000274327 BIVM-ERCC5R4GMW8 1640 aa24.01■■□□□ 1.43
TRIM23-202ENST00000274327 NESP48681 1621 aa23.98■■□□□ 1.43
TRIM23-202ENST00000274327 CUX1P39880 1505 aa23.94■■□□□ 1.42
TRIM23-202ENST00000274327 FANCD2Q9BXW9 1451 aa23.93■■□□□ 1.42
TRIM23-202ENST00000274327 FAM9AQ8IZU1 332 aaPredicted RBP23.85■■□□□ 1.41
TRIM23-202ENST00000274327 SOGA1O94964 1423 aa23.84■■□□□ 1.41
TRIM23-202ENST00000274327 EEA1Q15075 1411 aa23.82■■□□□ 1.4
TRIM23-202ENST00000274327 LOC105371045A0A1W2PR82 267 aa23.82■■□□□ 1.4
TRIM23-202ENST00000274327 PDS5BQ9NTI5 1447 aa23.8■■□□□ 1.4
TRIM23-202ENST00000274327 CEP164Q9UPV0 1460 aa23.78■■□□□ 1.4
TRIM23-202ENST00000274327 RUSC2Q8N2Y8 1516 aa23.77■■□□□ 1.4
TRIM23-202ENST00000274327 DNMBPQ6XZF7 1577 aa23.75■■□□□ 1.39
TRIM23-202ENST00000274327 KIF21AQ7Z4S6 1674 aa23.74■■□□□ 1.39
TRIM23-202ENST00000274327 TOPBP1Q92547 1522 aa23.69■■□□□ 1.38
TRIM23-202ENST00000274327 FGD5Q6ZNL6 1462 aa23.67■■□□□ 1.38
TRIM23-202ENST00000274327 URB2Q14146 1524 aaKnown RBP23.65■■□□□ 1.38
TRIM23-202ENST00000274327 CSRNP3Q8WYN3 585 aa23.65■■□□□ 1.38
TRIM23-202ENST00000274327 POLA1P09884 1462 aaPredicted RBP23.56■■□□□ 1.36
TRIM23-202ENST00000274327 KIF27Q86VH2 1401 aa23.55■■□□□ 1.36
TRIM23-202ENST00000274327 KIF21BO75037 1637 aa23.54■■□□□ 1.36
TRIM23-202ENST00000274327 MRC2Q9UBG0 1479 aa23.52■■□□□ 1.36
TRIM23-202ENST00000274327 CUX2O14529 1486 aa23.49■■□□□ 1.35
TRIM23-202ENST00000274327 ABCA10Q8WWZ4 1543 aa23.48■■□□□ 1.35
TRIM23-202ENST00000274327 GOLGA3Q08378 1498 aa23.48■■□□□ 1.35
TRIM23-202ENST00000274327 EHMT2Q96KQ7 1210 aa23.47■■□□□ 1.35
TRIM23-202ENST00000274327 RAD54L2Q9Y4B4 1467 aa23.47■■□□□ 1.35
TRIM23-202ENST00000274327 WDR97A6NE52 1622 aa23.45■■□□□ 1.34
TRIM23-202ENST00000274327 WDR62O43379 1518 aa23.42■■□□□ 1.34
TRIM23-202ENST00000274327 PRXQ9BXM0 1461 aa23.42■■□□□ 1.34
TRIM23-202ENST00000274327 TNIKQ9UKE5 1360 aa23.41■■□□□ 1.34
TRIM23-202ENST00000274327 ERCC6Q03468 1493 aa23.4■■□□□ 1.34
TRIM23-202ENST00000274327 ERICH3Q5RHP9 1530 aa23.38■■□□□ 1.33
TRIM23-202ENST00000274327 THOC2Q8NI27 1593 aaKnown RBP23.37■■□□□ 1.33
TRIM23-202ENST00000274327 RAPGEF2Q9Y4G8 1499 aa23.36■■□□□ 1.33
TRIM23-202ENST00000274327 TARBP1Q13395 1621 aaKnown RBP23.36■■□□□ 1.33
TRIM23-202ENST00000274327 IGF1RP08069 1367 aa23.35■■□□□ 1.33
TRIM23-202ENST00000274327 ABCA5Q8WWZ7 1642 aa23.31■■□□□ 1.32
TRIM23-202ENST00000274327 UBTFP17480 764 aaKnown RBP23.29■■□□□ 1.32
TRIM23-202ENST00000274327 CEP162Q5TB80 1403 aa23.25■■□□□ 1.31
TRIM23-202ENST00000274327 IFT140Q96RY7 1462 aa23.23■■□□□ 1.31
TRIM23-202ENST00000274327 CARMIL1Q5VZK9 1371 aa23.22■■□□□ 1.31
TRIM23-202ENST00000274327 GAPVD1Q14C86 1478 aa23.21■■□□□ 1.31
TRIM23-202ENST00000274327 CUL7Q14999 1698 aa23.21■■□□□ 1.31
TRIM23-202ENST00000274327 TDRD9Q8NDG6 1382 aaKnown RBP23.21■■□□□ 1.31
TRIM23-202ENST00000274327 PBRM1Q86U86 1689 aa23.14■■□□□ 1.29
TRIM23-202ENST00000274327 ZNF608Q9ULD9 1512 aaPredicted RBP23.09■■□□□ 1.29
TRIM23-202ENST00000274327 AQRO60306 1485 aaKnown RBP eCLIP23.09■■□□□ 1.29
TRIM23-202ENST00000274327 CLIP1P30622 1438 aa23.08■■□□□ 1.29
TRIM23-202ENST00000274327 GRIN2BQ13224 1484 aa23.04■■□□□ 1.28
TRIM23-202ENST00000274327 EIF4G3O43432 1585 aaKnown RBP23.04■■□□□ 1.28
TRIM23-202ENST00000274327 ADAMTS12P58397 1594 aa23■■□□□ 1.27
TRIM23-202ENST00000274327 FHAD1B1AJZ9 1412 aa22.97■■□□□ 1.27
TRIM23-202ENST00000274327 CTTNBP2Q8WZ74 1663 aa22.96■■□□□ 1.27
TRIM23-202ENST00000274327 ARAP1Q96P48 1450 aa22.9■■□□□ 1.26
TRIM23-202ENST00000274327 SNAPC4Q5SXM2 1469 aa22.89■■□□□ 1.26
TRIM23-202ENST00000274327 VPS8Q8N3P4 1428 aa22.89■■□□□ 1.25
TRIM23-202ENST00000274327 ARHGAP35Q9NRY4 1499 aa22.89■■□□□ 1.25
TRIM23-202ENST00000274327 RANGAP1P46060 587 aaPredicted RBP22.87■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms