RNA–Protein interactions for RNA: ENST00000265299.6

MINDY4-201, Transcript of MINDY lysine 48 deubiquitinase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MINDY4, Length 2,733 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MINDY4-201ENST00000265299 NISCHQ9Y2I1 1504 aa29.86■■■□□ 2.37
MINDY4-201ENST00000265299 CCDC180Q9P1Z9 1646 aa25.68■■□□□ 1.7
MINDY4-201ENST00000265299 DCAF8L2P0C7V8 631 aa25.19■■□□□ 1.62
MINDY4-201ENST00000265299 ZCCHC6Q5VYS8 1495 aaKnown RBP25.09■■□□□ 1.61
MINDY4-201ENST00000265299 SHROOM4Q9ULL8 1493 aa25.09■■□□□ 1.61
MINDY4-201ENST00000265299 ABCC9O60706 1549 aa24.69■■□□□ 1.54
MINDY4-201ENST00000265299 HRCP23327 699 aa24.41■■□□□ 1.5
MINDY4-201ENST00000265299 DCAF1Q9Y4B6 1507 aa24.39■■□□□ 1.5
MINDY4-201ENST00000265299 SUPT5HO00267 1087 aaKnown RBP24.32■■□□□ 1.48
MINDY4-201ENST00000265299 SCRIBQ14160 1630 aa24.11■■□□□ 1.45
MINDY4-201ENST00000265299 PCGF6Q9BYE7 350 aa24.03■■□□□ 1.44
MINDY4-201ENST00000265299 PPARGC1BQ86YN6 1023 aaKnown RBP24.01■■□□□ 1.43
MINDY4-201ENST00000265299 MYO15BQ96JP2 1530 aa23.96■■□□□ 1.43
MINDY4-201ENST00000265299 NACADO15069 1562 aa23.94■■□□□ 1.42
MINDY4-201ENST00000265299 CHIC1Q5VXU3 224 aa23.83■■□□□ 1.4
MINDY4-201ENST00000265299 RB1CC1Q8TDY2 1594 aa23.77■■□□□ 1.4
MINDY4-201ENST00000265299 PABPN1Q86U42 306 aaKnown RBP eCLIP23.49■■□□□ 1.35
MINDY4-201ENST00000265299 UNC13AQ9UPW8 1703 aa23.46■■□□□ 1.35
MINDY4-201ENST00000265299 CECR2Q9BXF3 1484 aa23.45■■□□□ 1.35
MINDY4-201ENST00000265299 RSF1Q96T23 1441 aaPredicted RBP23.36■■□□□ 1.33
MINDY4-201ENST00000265299 LOC105371045A0A1W2PR82 267 aa23.33■■□□□ 1.33
MINDY4-201ENST00000265299 PELP1Q8IZL8 1130 aaKnown RBP23.31■■□□□ 1.32
MINDY4-201ENST00000265299 MROH2BQ7Z745 1585 aa23.25■■□□□ 1.31
MINDY4-201ENST00000265299 BICRAQ9NZM4 1560 aa23.21■■□□□ 1.31
MINDY4-201ENST00000265299 TRIM26Q12899 539 aaPredicted RBP23.19■■□□□ 1.3
MINDY4-201ENST00000265299 WIZO95785 1651 aa23.09■■□□□ 1.29
MINDY4-201ENST00000265299 SCAF1Q9H7N4 1312 aaKnown RBP23.07■■□□□ 1.28
MINDY4-201ENST00000265299 BAZ1AQ9NRL2 1556 aaPredicted RBP22.97■■□□□ 1.27
MINDY4-201ENST00000265299 ZEB1P37275 1124 aaPredicted RBP22.92■■□□□ 1.26
MINDY4-201ENST00000265299 SMARCA4P51532 1647 aa22.92■■□□□ 1.26
MINDY4-201ENST00000265299 TOP2AP11388 1531 aaKnown RBP22.62■■□□□ 1.21
MINDY4-201ENST00000265299 CCDC88BA6NC98 1476 aa22.57■■□□□ 1.2
MINDY4-201ENST00000265299 ATAD2BQ9ULI0 1458 aa22.54■■□□□ 1.2
MINDY4-201ENST00000265299 FAM9AQ8IZU1 332 aaPredicted RBP22.52■■□□□ 1.2
MINDY4-201ENST00000265299 SMARCA2P51531 1590 aa22.51■■□□□ 1.19
MINDY4-201ENST00000265299 ACIN1Q9UKV3 1341 aaKnown RBP22.51■■□□□ 1.19
MINDY4-201ENST00000265299 NEUROD1Q13562 356 aa22.49■■□□□ 1.19
MINDY4-201ENST00000265299 EIF4G1Q04637 1599 aaKnown RBP22.49■■□□□ 1.19
MINDY4-201ENST00000265299 TRIM41Q8WV44 630 aa22.49■■□□□ 1.19
MINDY4-201ENST00000265299 EHMT2Q96KQ7 1210 aa22.49■■□□□ 1.19
MINDY4-201ENST00000265299 PEG3Q9GZU2 1588 aa22.44■■□□□ 1.18
MINDY4-201ENST00000265299 BAZ1BQ9UIG0 1483 aaKnown RBP22.43■■□□□ 1.18
MINDY4-201ENST00000265299 GTF3C3Q9Y5Q9 886 aa22.37■■□□□ 1.17
MINDY4-201ENST00000265299 ABCC8Q09428 1581 aa22.32■■□□□ 1.16
MINDY4-201ENST00000265299 MYT1Q01538 1121 aa22.32■■□□□ 1.16
MINDY4-201ENST00000265299 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.31■■□□□ 1.16
MINDY4-201ENST00000265299 CCER1Q8TC90 406 aaPredicted RBP22.24■■□□□ 1.15
MINDY4-201ENST00000265299 CENPBP07199 599 aaPredicted RBP22.22■■□□□ 1.15
MINDY4-201ENST00000265299 DIEXFQ68CQ4 756 aaKnown RBP22.2■■□□□ 1.14
MINDY4-201ENST00000265299 NCAPD3P42695 1498 aa22.19■■□□□ 1.14
MINDY4-201ENST00000265299 CC2D2AQ9P2K1 1620 aa22.16■■□□□ 1.14
MINDY4-201ENST00000265299 HMGXB3Q12766 1538 aa22.1■■□□□ 1.13
MINDY4-201ENST00000265299 DNAJC5BQ9UF47 199 aa22.05■■□□□ 1.12
MINDY4-201ENST00000265299 WRNQ14191 1432 aaPredicted RBP eCLIP21.95■■□□□ 1.19e-6■■■■■ 50.1
MINDY4-201ENST00000265299 SOGA1O94964 1423 aa21.94■■□□□ 1.1
MINDY4-201ENST00000265299 TTBK1Q5TCY1 1321 aaPredicted RBP21.94■■□□□ 1.1
MINDY4-201ENST00000265299 YTHDC1Q96MU7 727 aaKnown RBP21.92■■□□□ 1.1
MINDY4-201ENST00000265299 SYNJ1O43426 1573 aa21.92■■□□□ 1.1
MINDY4-201ENST00000265299 RUSC2Q8N2Y8 1516 aa21.91■■□□□ 1.1
MINDY4-201ENST00000265299 CFTRP13569 1480 aa21.81■■□□□ 1.08
MINDY4-201ENST00000265299 NESP48681 1621 aa21.77■■□□□ 1.07
MINDY4-201ENST00000265299 ZNF316A6NFI3 1004 aaPredicted RBP21.76■■□□□ 1.07
MINDY4-201ENST00000265299 CADPSQ9ULU8 1353 aa21.75■■□□□ 1.07
MINDY4-201ENST00000265299 CUX1P39880 1505 aa21.68■■□□□ 1.06
MINDY4-201ENST00000265299 CSRNP3Q8WYN3 585 aa21.66■■□□□ 1.06
MINDY4-201ENST00000265299 MIER1Q8N108 512 aa21.65■■□□□ 1.06
MINDY4-201ENST00000265299 TOP2BQ02880 1626 aa21.64■■□□□ 1.05
MINDY4-201ENST00000265299 UBTFP17480 764 aaKnown RBP21.57■■□□□ 1.04
MINDY4-201ENST00000265299 FANCD2Q9BXW9 1451 aa21.56■■□□□ 1.04
MINDY4-201ENST00000265299 BIVM-ERCC5R4GMW8 1640 aa21.55■■□□□ 1.04
MINDY4-201ENST00000265299 RANGAP1P46060 587 aaPredicted RBP21.52■■□□□ 1.04
MINDY4-201ENST00000265299 PRDM2Q13029 1718 aa21.52■■□□□ 1.04
MINDY4-201ENST00000265299 CEP162Q5TB80 1403 aa21.48■■□□□ 1.03
MINDY4-201ENST00000265299 EEA1Q15075 1411 aa21.46■■□□□ 1.03
MINDY4-201ENST00000265299 FGD5Q6ZNL6 1462 aa21.42■■□□□ 1.02
MINDY4-201ENST00000265299 RAPGEF2Q9Y4G8 1499 aa21.42■■□□□ 1.02
MINDY4-201ENST00000265299 HNRNPUL2Q1KMD3 747 aaKnown RBP21.39■■□□□ 1.01
MINDY4-201ENST00000265299 GOLGA3Q08378 1498 aa21.38■■□□□ 1.01
MINDY4-201ENST00000265299 RAD54L2Q9Y4B4 1467 aa21.36■■□□□ 1.01
MINDY4-201ENST00000265299 LAMC3Q9Y6N6 1575 aa21.36■■□□□ 1.01
MINDY4-201ENST00000265299 CUX2O14529 1486 aa21.35■■□□□ 1.01
MINDY4-201ENST00000265299 CEP164Q9UPV0 1460 aa21.35■■□□□ 1.01
MINDY4-201ENST00000265299 TNIKQ9UKE5 1360 aa21.33■■□□□ 1.01
MINDY4-201ENST00000265299 TOPBP1Q92547 1522 aa21.32■■□□□ 1
MINDY4-201ENST00000265299 KIF21AQ7Z4S6 1674 aa21.32■■□□□ 1
MINDY4-201ENST00000265299 URB2Q14146 1524 aaKnown RBP21.32■■□□□ 1
MINDY4-201ENST00000265299 KIF27Q86VH2 1401 aa21.31■■□□□ 1
MINDY4-201ENST00000265299 SUPT16HQ9Y5B9 1047 aaKnown RBP21.28■■□□□ 1
MINDY4-201ENST00000265299 KIF21BO75037 1637 aa21.27■■□□□ 1
MINDY4-201ENST00000265299 POLA1P09884 1462 aaPredicted RBP21.27■■□□□ 1
MINDY4-201ENST00000265299 PDS5BQ9NTI5 1447 aa21.27■■□□□ 1
MINDY4-201ENST00000265299 DNMBPQ6XZF7 1577 aa21.26■□□□□ 0.99
MINDY4-201ENST00000265299 PRXQ9BXM0 1461 aa21.21■□□□□ 0.99
MINDY4-201ENST00000265299 IGF1RP08069 1367 aa21.21■□□□□ 0.99
MINDY4-201ENST00000265299 TDRD9Q8NDG6 1382 aaKnown RBP21.17■□□□□ 0.98
MINDY4-201ENST00000265299 TSHZ2Q9NRE2 1034 aa21.17■□□□□ 0.98
MINDY4-201ENST00000265299 CLIP1P30622 1438 aa21.15■□□□□ 0.98
MINDY4-201ENST00000265299 ANP32EQ9BTT0 268 aa21.14■□□□□ 0.97
MINDY4-201ENST00000265299 CLSPNQ9HAW4 1339 aa21.11■□□□□ 0.97
MINDY4-201ENST00000265299 CARMIL1Q5VZK9 1371 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms