RNA–Protein interactions for RNA: ENST00000263897.9

USE1-201, Transcript of unconventional SNARE in the ER 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USE1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-201ENST00000263897 NISCHQ9Y2I1 1504 aa39.6■■■■□ 3.93
USE1-201ENST00000263897 CCDC180Q9P1Z9 1646 aa35.32■■■■□ 3.24
USE1-201ENST00000263897 ABCC9O60706 1549 aa34.97■■■■□ 3.19
USE1-201ENST00000263897 RB1CC1Q8TDY2 1594 aa33.45■■■□□ 2.95
USE1-201ENST00000263897 DCAF8L2P0C7V8 631 aa33.34■■■□□ 2.93
USE1-201ENST00000263897 NACADO15069 1562 aa33.34■■■□□ 2.93
USE1-201ENST00000263897 MYO15BQ96JP2 1530 aa33.02■■■□□ 2.88
USE1-201ENST00000263897 ZCCHC6Q5VYS8 1495 aaKnown RBP32.86■■■□□ 2.85
USE1-201ENST00000263897 DCAF1Q9Y4B6 1507 aa32.73■■■□□ 2.83
USE1-201ENST00000263897 PABPN1Q86U42 306 aaKnown RBP eCLIP32.68■■■□□ 2.82
USE1-201ENST00000263897 UNC13AQ9UPW8 1703 aa32.67■■■□□ 2.82
USE1-201ENST00000263897 DNAJC5BQ9UF47 199 aa32.54■■■□□ 2.8
USE1-201ENST00000263897 BICRAQ9NZM4 1560 aa32.47■■■□□ 2.79
USE1-201ENST00000263897 SCRIBQ14160 1630 aa32.19■■■□□ 2.74
USE1-201ENST00000263897 SHROOM4Q9ULL8 1493 aa32.05■■■□□ 2.72
USE1-201ENST00000263897 EIF4G1Q04637 1599 aaKnown RBP31.62■■■□□ 2.65
USE1-201ENST00000263897 CC2D2AQ9P2K1 1620 aa31.6■■■□□ 2.65
USE1-201ENST00000263897 CECR2Q9BXF3 1484 aa31.46■■■□□ 2.63
USE1-201ENST00000263897 NCAPD3P42695 1498 aa30.8■■■□□ 2.52
USE1-201ENST00000263897 SMARCA4P51532 1647 aa30.77■■■□□ 2.52
USE1-201ENST00000263897 ATAD2BQ9ULI0 1458 aa30.74■■■□□ 2.51
USE1-201ENST00000263897 BAZ1AQ9NRL2 1556 aaPredicted RBP30.7■■■□□ 2.5
USE1-201ENST00000263897 SMARCA2P51531 1590 aa30.66■■■□□ 2.5
USE1-201ENST00000263897 HMGXB3Q12766 1538 aa30.55■■■□□ 2.48
USE1-201ENST00000263897 MROH2BQ7Z745 1585 aa30.52■■■□□ 2.48
USE1-201ENST00000263897 PEG3Q9GZU2 1588 aa30.49■■■□□ 2.47
USE1-201ENST00000263897 BAZ1BQ9UIG0 1483 aaKnown RBP30.44■■■□□ 2.46
USE1-201ENST00000263897 NESP48681 1621 aa30.16■■■□□ 2.42
USE1-201ENST00000263897 ERCC6Q03468 1493 aa30.16■■■□□ 2.42
USE1-201ENST00000263897 WIZO95785 1651 aa30.15■■■□□ 2.42
USE1-201ENST00000263897 RSF1Q96T23 1441 aaPredicted RBP30.05■■■□□ 2.4
USE1-201ENST00000263897 LAMC3Q9Y6N6 1575 aa30■■■□□ 2.39
USE1-201ENST00000263897 CUX2O14529 1486 aa29.97■■■□□ 2.39
USE1-201ENST00000263897 CADPSQ9ULU8 1353 aa29.9■■■□□ 2.38
USE1-201ENST00000263897 PDS5BQ9NTI5 1447 aa29.85■■■□□ 2.37
USE1-201ENST00000263897 TOP2AP11388 1531 aaKnown RBP29.79■■■□□ 2.36
USE1-201ENST00000263897 KIF21AQ7Z4S6 1674 aa29.74■■■□□ 2.35
USE1-201ENST00000263897 THOC2Q8NI27 1593 aaKnown RBP29.72■■■□□ 2.35
USE1-201ENST00000263897 CFTRP13569 1480 aa29.61■■■□□ 2.33
USE1-201ENST00000263897 DNAJC5Q9H3Z4 198 aa29.6■■■□□ 2.33
USE1-201ENST00000263897 MRC2Q9UBG0 1479 aa29.53■■■□□ 2.32
USE1-201ENST00000263897 FANCD2Q9BXW9 1451 aa29.51■■■□□ 2.31
USE1-201ENST00000263897 CCDC88BA6NC98 1476 aa29.49■■■□□ 2.31
USE1-201ENST00000263897 CEP164Q9UPV0 1460 aa29.49■■■□□ 2.31
USE1-201ENST00000263897 WDR62O43379 1518 aa29.43■■■□□ 2.3
USE1-201ENST00000263897 PRDM2Q13029 1718 aa29.28■■■□□ 2.28
USE1-201ENST00000263897 URB2Q14146 1524 aaKnown RBP29.24■■■□□ 2.27
USE1-201ENST00000263897 SUPT5HO00267 1087 aaKnown RBP29.06■■■□□ 2.24
USE1-201ENST00000263897 TOPBP1Q92547 1522 aa28.99■■■□□ 2.23
USE1-201ENST00000263897 ABCC8Q09428 1581 aa28.99■■■□□ 2.23
USE1-201ENST00000263897 DNMBPQ6XZF7 1577 aa28.91■■■□□ 2.22
USE1-201ENST00000263897 IFT140Q96RY7 1462 aa28.91■■■□□ 2.22
USE1-201ENST00000263897 ZNF608Q9ULD9 1512 aaPredicted RBP28.82■■■□□ 2.2
USE1-201ENST00000263897 OSCARQ8IYS5 282 aa28.76■■■□□ 2.19
USE1-201ENST00000263897 POLA1P09884 1462 aaPredicted RBP28.72■■■□□ 2.19
USE1-201ENST00000263897 TARBP1Q13395 1621 aaKnown RBP28.7■■■□□ 2.19
USE1-201ENST00000263897 SOGA1O94964 1423 aa28.65■■■□□ 2.18
USE1-201ENST00000263897 AQRO60306 1485 aaKnown RBP eCLIP28.64■■■□□ 2.179e-7■■■■■ 33.4
USE1-201ENST00000263897 CUX1P39880 1505 aa28.64■■■□□ 2.17
USE1-201ENST00000263897 RAD54L2Q9Y4B4 1467 aa28.63■■■□□ 2.17
USE1-201ENST00000263897 EIF4G3O43432 1585 aaKnown RBP28.62■■■□□ 2.17
USE1-201ENST00000263897 FGD5Q6ZNL6 1462 aa28.59■■■□□ 2.17
USE1-201ENST00000263897 TDRD9Q8NDG6 1382 aaKnown RBP28.54■■■□□ 2.16
USE1-201ENST00000263897 TRIM41Q8WV44 630 aa28.42■■■□□ 2.14
USE1-201ENST00000263897 WDR97A6NE52 1622 aa28.42■■■□□ 2.14
USE1-201ENST00000263897 FBLN2P98095 1184 aa28.4■■■□□ 2.14
USE1-201ENST00000263897 CHD1O14646 1710 aa28.35■■■□□ 2.13
USE1-201ENST00000263897 WRNQ14191 1432 aaPredicted RBP eCLIP28.34■■■□□ 2.13
USE1-201ENST00000263897 GRIN2BQ13224 1484 aa28.32■■■□□ 2.12
USE1-201ENST00000263897 SNAPC4Q5SXM2 1469 aa28.31■■■□□ 2.12
USE1-201ENST00000263897 ABCA10Q8WWZ4 1543 aa28.31■■■□□ 2.12
USE1-201ENST00000263897 TOP2BQ02880 1626 aa28.29■■■□□ 2.12
USE1-201ENST00000263897 GAPVD1Q14C86 1478 aa28.27■■■□□ 2.12
USE1-201ENST00000263897 MAGI1Q96QZ7 1491 aaPredicted RBP28.27■■■□□ 2.12
USE1-201ENST00000263897 BIVM-ERCC5R4GMW8 1640 aa28.26■■■□□ 2.11
USE1-201ENST00000263897 CHMP7Q8WUX9 453 aaPredicted RBP28.26■■■□□ 2.11
USE1-201ENST00000263897 SYNJ1O43426 1573 aa28.24■■■□□ 2.11
USE1-201ENST00000263897 RIMBP3CA6NJZ7 1639 aa28.24■■■□□ 2.11
USE1-201ENST00000263897 RIMBP3BA6NNM3 1639 aa28.24■■■□□ 2.11
USE1-201ENST00000263897 RIMBP3Q9UFD9 1639 aa28.24■■■□□ 2.11
USE1-201ENST00000263897 ARHGEF11O15085 1522 aa28.2■■■□□ 2.1
USE1-201ENST00000263897 ABCA5Q8WWZ7 1642 aa28.18■■■□□ 2.1
USE1-201ENST00000263897 PBRM1Q86U86 1689 aa28.17■■■□□ 2.1
USE1-201ENST00000263897 SYNJ2O15056 1496 aa28.17■■■□□ 2.1
USE1-201ENST00000263897 CYB5RLQ6IPT4 315 aa28.05■■■□□ 2.08
USE1-201ENST00000263897 CLASP1Q7Z460 1538 aa28.05■■■□□ 2.08
USE1-201ENST00000263897 ERICH3Q5RHP9 1530 aa27.95■■■□□ 2.06
USE1-201ENST00000263897 ARAP1Q96P48 1450 aa27.95■■■□□ 2.06
USE1-201ENST00000263897 GRIN2AQ12879 1464 aa27.94■■■□□ 2.06
USE1-201ENST00000263897 ADAMTS12P58397 1594 aa27.94■■■□□ 2.06
USE1-201ENST00000263897 FHAD1B1AJZ9 1412 aa27.93■■■□□ 2.06
USE1-201ENST00000263897 NUP160Q12769 1436 aa27.84■■■□□ 2.05
USE1-201ENST00000263897 CEP170Q5SW79 1584 aa27.81■■■□□ 2.04
USE1-201ENST00000263897 KIF27Q86VH2 1401 aa27.77■■■□□ 2.04
USE1-201ENST00000263897 IGF1RP08069 1367 aa27.75■■■□□ 2.03
USE1-201ENST00000263897 ERCC6L2Q5T890 1561 aa27.65■■■□□ 2.02
USE1-201ENST00000263897 SHROOM2Q13796 1616 aa27.65■■■□□ 2.02
USE1-201ENST00000263897 JPH4Q96JJ6 628 aa27.64■■■□□ 2.02
USE1-201ENST00000263897 TRHP20396 242 aaPredicted RBP27.6■■■□□ 2.01
USE1-201ENST00000263897 CUL7Q14999 1698 aa27.59■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms