RNA–Protein interactions for RNA: ENST00000262570.9

CHCHD3-201, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHCHD3, Length 1,598 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-201ENST00000262570 NISCHQ9Y2I1 1504 aa39.57■■■■□ 3.92
CHCHD3-201ENST00000262570 CCDC180Q9P1Z9 1646 aa34.92■■■■□ 3.18
CHCHD3-201ENST00000262570 ABCC9O60706 1549 aa33.79■■■■□ 3
CHCHD3-201ENST00000262570 ZCCHC6Q5VYS8 1495 aaKnown RBP33.05■■■□□ 2.88
CHCHD3-201ENST00000262570 DCAF8L2P0C7V8 631 aa32.92■■■□□ 2.86
CHCHD3-201ENST00000262570 NACADO15069 1562 aa32.77■■■□□ 2.84
CHCHD3-201ENST00000262570 DCAF1Q9Y4B6 1507 aa32.76■■■□□ 2.83
CHCHD3-201ENST00000262570 MYO15BQ96JP2 1530 aa32.74■■■□□ 2.83
CHCHD3-201ENST00000262570 RB1CC1Q8TDY2 1594 aa32.67■■■□□ 2.82
CHCHD3-201ENST00000262570 SCRIBQ14160 1630 aa31.92■■■□□ 2.7
CHCHD3-201ENST00000262570 UNC13AQ9UPW8 1703 aa31.89■■■□□ 2.7
CHCHD3-201ENST00000262570 PABPN1Q86U42 306 aaKnown RBP eCLIP31.69■■■□□ 2.66
CHCHD3-201ENST00000262570 BICRAQ9NZM4 1560 aa31.69■■■□□ 2.66
CHCHD3-201ENST00000262570 SHROOM4Q9ULL8 1493 aa31.53■■■□□ 2.64
CHCHD3-201ENST00000262570 EIF4G1Q04637 1599 aaKnown RBP30.81■■■□□ 2.52
CHCHD3-201ENST00000262570 CECR2Q9BXF3 1484 aa30.8■■■□□ 2.52
CHCHD3-201ENST00000262570 DNAJC5BQ9UF47 199 aa30.67■■■□□ 2.5
CHCHD3-201ENST00000262570 BAZ1AQ9NRL2 1556 aaPredicted RBP30.62■■■□□ 2.49
CHCHD3-201ENST00000262570 SMARCA4P51532 1647 aa30.58■■■□□ 2.49
CHCHD3-201ENST00000262570 CC2D2AQ9P2K1 1620 aa30.57■■■□□ 2.48
CHCHD3-201ENST00000262570 MROH2BQ7Z745 1585 aa30.51■■■□□ 2.47
CHCHD3-201ENST00000262570 ATAD2BQ9ULI0 1458 aa30.34■■■□□ 2.45
CHCHD3-201ENST00000262570 RSF1Q96T23 1441 aaPredicted RBP30.34■■■□□ 2.45
CHCHD3-201ENST00000262570 SMARCA2P51531 1590 aa30.3■■■□□ 2.44
CHCHD3-201ENST00000262570 PEG3Q9GZU2 1588 aa30.3■■■□□ 2.44
CHCHD3-201ENST00000262570 NCAPD3P42695 1498 aa30.26■■■□□ 2.44
CHCHD3-201ENST00000262570 WIZO95785 1651 aa30.17■■■□□ 2.42
CHCHD3-201ENST00000262570 HMGXB3Q12766 1538 aa30.12■■■□□ 2.41
CHCHD3-201ENST00000262570 BAZ1BQ9UIG0 1483 aaKnown RBP30.1■■■□□ 2.41
CHCHD3-201ENST00000262570 SUPT5HO00267 1087 aaKnown RBP29.92■■■□□ 2.38
CHCHD3-201ENST00000262570 TOP2AP11388 1531 aaKnown RBP29.87■■■□□ 2.37
CHCHD3-201ENST00000262570 CCDC88BA6NC98 1476 aa29.56■■■□□ 2.32
CHCHD3-201ENST00000262570 CADPSQ9ULU8 1353 aa29.42■■■□□ 2.3
CHCHD3-201ENST00000262570 NESP48681 1621 aa29.38■■■□□ 2.29
CHCHD3-201ENST00000262570 LAMC3Q9Y6N6 1575 aa29.35■■■□□ 2.29
CHCHD3-201ENST00000262570 CFTRP13569 1480 aa29.33■■■□□ 2.29
CHCHD3-201ENST00000262570 PDS5BQ9NTI5 1447 aa29.17■■■□□ 2.26
CHCHD3-201ENST00000262570 ERCC6Q03468 1493 aa29.07■■■□□ 2.24
CHCHD3-201ENST00000262570 FANCD2Q9BXW9 1451 aa29.05■■■□□ 2.24
CHCHD3-201ENST00000262570 PRDM2Q13029 1718 aa29.02■■■□□ 2.24
CHCHD3-201ENST00000262570 KIF21AQ7Z4S6 1674 aa28.99■■■□□ 2.23
CHCHD3-201ENST00000262570 CEP164Q9UPV0 1460 aa28.95■■■□□ 2.22
CHCHD3-201ENST00000262570 MRC2Q9UBG0 1479 aa28.82■■■□□ 2.2
CHCHD3-201ENST00000262570 THOC2Q8NI27 1593 aaKnown RBP28.8■■■□□ 2.2
CHCHD3-201ENST00000262570 URB2Q14146 1524 aaKnown RBP28.73■■■□□ 2.19
CHCHD3-201ENST00000262570 WDR62O43379 1518 aa28.71■■■□□ 2.19
CHCHD3-201ENST00000262570 ABCC8Q09428 1581 aa28.65■■■□□ 2.18
CHCHD3-201ENST00000262570 TOPBP1Q92547 1522 aa28.63■■■□□ 2.17
CHCHD3-201ENST00000262570 DNMBPQ6XZF7 1577 aa28.62■■■□□ 2.17
CHCHD3-201ENST00000262570 CUX2O14529 1486 aa28.61■■■□□ 2.17
CHCHD3-201ENST00000262570 CUX1P39880 1505 aa28.58■■■□□ 2.17
CHCHD3-201ENST00000262570 WRNQ14191 1432 aaPredicted RBP eCLIP28.58■■■□□ 2.17
CHCHD3-201ENST00000262570 SYNJ1O43426 1573 aa28.45■■■□□ 2.15
CHCHD3-201ENST00000262570 TOP2BQ02880 1626 aa28.44■■■□□ 2.14
CHCHD3-201ENST00000262570 POLA1P09884 1462 aaPredicted RBP28.43■■■□□ 2.14
CHCHD3-201ENST00000262570 BIVM-ERCC5R4GMW8 1640 aa28.42■■■□□ 2.14
CHCHD3-201ENST00000262570 FGD5Q6ZNL6 1462 aa28.41■■■□□ 2.14
CHCHD3-201ENST00000262570 IFT140Q96RY7 1462 aa28.34■■■□□ 2.13
CHCHD3-201ENST00000262570 SOGA1O94964 1423 aa28.34■■■□□ 2.13
CHCHD3-201ENST00000262570 RAD54L2Q9Y4B4 1467 aa28.31■■■□□ 2.12
CHCHD3-201ENST00000262570 TARBP1Q13395 1621 aaKnown RBP28.27■■■□□ 2.12
CHCHD3-201ENST00000262570 TRIM41Q8WV44 630 aa28.24■■■□□ 2.11
CHCHD3-201ENST00000262570 CHIC1Q5VXU3 224 aa28.2■■■□□ 2.11
CHCHD3-201ENST00000262570 ZNF608Q9ULD9 1512 aaPredicted RBP28.19■■■□□ 2.1
CHCHD3-201ENST00000262570 ABCA10Q8WWZ4 1543 aa28.18■■■□□ 2.1
CHCHD3-201ENST00000262570 TDRD9Q8NDG6 1382 aaKnown RBP28.13■■■□□ 2.09
CHCHD3-201ENST00000262570 WDR97A6NE52 1622 aa28.11■■■□□ 2.09
CHCHD3-201ENST00000262570 AQRO60306 1485 aaKnown RBP eCLIP28.1■■■□□ 2.09
CHCHD3-201ENST00000262570 EIF4G3O43432 1585 aaKnown RBP28.05■■■□□ 2.08
CHCHD3-201ENST00000262570 GAPVD1Q14C86 1478 aa28■■■□□ 2.07
CHCHD3-201ENST00000262570 ABCA5Q8WWZ7 1642 aa27.99■■■□□ 2.07
CHCHD3-201ENST00000262570 KIF27Q86VH2 1401 aa27.94■■■□□ 2.06
CHCHD3-201ENST00000262570 GRIN2BQ13224 1484 aa27.93■■■□□ 2.06
CHCHD3-201ENST00000262570 RUSC2Q8N2Y8 1516 aa27.84■■■□□ 2.05
CHCHD3-201ENST00000262570 PBRM1Q86U86 1689 aa27.83■■■□□ 2.05
CHCHD3-201ENST00000262570 ERICH3Q5RHP9 1530 aa27.83■■■□□ 2.05
CHCHD3-201ENST00000262570 SNAPC4Q5SXM2 1469 aa27.82■■■□□ 2.04
CHCHD3-201ENST00000262570 IGF1RP08069 1367 aa27.82■■■□□ 2.04
CHCHD3-201ENST00000262570 MAGI1Q96QZ7 1491 aaPredicted RBP27.8■■■□□ 2.04
CHCHD3-201ENST00000262570 EEA1Q15075 1411 aa27.7■■■□□ 2.03
CHCHD3-201ENST00000262570 FHAD1B1AJZ9 1412 aa27.7■■■□□ 2.02
CHCHD3-201ENST00000262570 SYNJ2O15056 1496 aa27.7■■■□□ 2.02
CHCHD3-201ENST00000262570 ADAMTS12P58397 1594 aa27.68■■■□□ 2.02
CHCHD3-201ENST00000262570 FBLN2P98095 1184 aa27.68■■■□□ 2.02
CHCHD3-201ENST00000262570 CHMP7Q8WUX9 453 aaPredicted RBP27.68■■■□□ 2.02
CHCHD3-201ENST00000262570 CARMIL1Q5VZK9 1371 aa27.65■■■□□ 2.02
CHCHD3-201ENST00000262570 CSRNP3Q8WYN3 585 aa27.65■■■□□ 2.02
CHCHD3-201ENST00000262570 FAM9AQ8IZU1 332 aaPredicted RBP27.63■■■□□ 2.01
CHCHD3-201ENST00000262570 CUL7Q14999 1698 aa27.62■■■□□ 2.01
CHCHD3-201ENST00000262570 CHD1O14646 1710 aa27.58■■■□□ 2.01
CHCHD3-201ENST00000262570 GRIN2AQ12879 1464 aa27.57■■■□□ 2
CHCHD3-201ENST00000262570 OSCARQ8IYS5 282 aa27.56■■■□□ 2
CHCHD3-201ENST00000262570 PRXQ9BXM0 1461 aa27.54■■■□□ 2
CHCHD3-201ENST00000262570 RAPGEF2Q9Y4G8 1499 aa27.51■■□□□ 1.99
CHCHD3-201ENST00000262570 NUP160Q12769 1436 aa27.44■■□□□ 1.98
CHCHD3-201ENST00000262570 CEP170Q5SW79 1584 aa27.39■■□□□ 1.98
CHCHD3-201ENST00000262570 KIF21BO75037 1637 aa27.35■■□□□ 1.97
CHCHD3-201ENST00000262570 CLASP1Q7Z460 1538 aa27.34■■□□□ 1.97
CHCHD3-201ENST00000262570 KIAA0586Q9BVV6 1533 aa27.3■■□□□ 1.96
CHCHD3-201ENST00000262570 DNAJC5Q9H3Z4 198 aa27.26■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms