RNA–Protein interactions for RNA: ENST00000262396.10

TRAF4-202, Transcript of TNF receptor associated factor 4, humanhuman

TSL 1 (best) BASIC

Gene TRAF4, Length 683 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-202ENST00000262396 NISCHQ9Y2I1 1504 aa30.12■■■□□ 2.41
TRAF4-202ENST00000262396 ABCC9O60706 1549 aa27.06■■□□□ 1.92
TRAF4-202ENST00000262396 CCDC180Q9P1Z9 1646 aa26.95■■□□□ 1.91
TRAF4-202ENST00000262396 DCAF8L2P0C7V8 631 aa25.76■■□□□ 1.71
TRAF4-202ENST00000262396 RB1CC1Q8TDY2 1594 aa25.74■■□□□ 1.71
TRAF4-202ENST00000262396 NACADO15069 1562 aa25.54■■□□□ 1.68
TRAF4-202ENST00000262396 PABPN1Q86U42 306 aaKnown RBP eCLIP25.27■■□□□ 1.64
TRAF4-202ENST00000262396 DNAJC5BQ9UF47 199 aa25.24■■□□□ 1.63
TRAF4-202ENST00000262396 MYO15BQ96JP2 1530 aa25.12■■□□□ 1.61
TRAF4-202ENST00000262396 UNC13AQ9UPW8 1703 aa24.97■■□□□ 1.59
TRAF4-202ENST00000262396 ZCCHC6Q5VYS8 1495 aaKnown RBP24.95■■□□□ 1.58
TRAF4-202ENST00000262396 DCAF1Q9Y4B6 1507 aa24.83■■□□□ 1.57
TRAF4-202ENST00000262396 BICRAQ9NZM4 1560 aa24.83■■□□□ 1.57
TRAF4-202ENST00000262396 SCRIBQ14160 1630 aa24.68■■□□□ 1.54
TRAF4-202ENST00000262396 SHROOM4Q9ULL8 1493 aa24.59■■□□□ 1.53
TRAF4-202ENST00000262396 CECR2Q9BXF3 1484 aa24.37■■□□□ 1.49
TRAF4-202ENST00000262396 CC2D2AQ9P2K1 1620 aa24.36■■□□□ 1.49
TRAF4-202ENST00000262396 EIF4G1Q04637 1599 aaKnown RBP24.32■■□□□ 1.48
TRAF4-202ENST00000262396 NCAPD3P42695 1498 aa23.56■■□□□ 1.36
TRAF4-202ENST00000262396 ATAD2BQ9ULI0 1458 aa23.51■■□□□ 1.35
TRAF4-202ENST00000262396 SMARCA2P51531 1590 aa23.49■■□□□ 1.35
TRAF4-202ENST00000262396 SMARCA4P51532 1647 aa23.48■■□□□ 1.35
TRAF4-202ENST00000262396 ERCC6Q03468 1493 aa23.47■■□□□ 1.35
TRAF4-202ENST00000262396 BAZ1AQ9NRL2 1556 aaPredicted RBP23.42■■□□□ 1.34
TRAF4-202ENST00000262396 HMGXB3Q12766 1538 aa23.38■■□□□ 1.33
TRAF4-202ENST00000262396 BAZ1BQ9UIG0 1483 aaKnown RBP23.37■■□□□ 1.33
TRAF4-202ENST00000262396 CUX2O14529 1486 aa23.26■■□□□ 1.31
TRAF4-202ENST00000262396 DNAJC5Q9H3Z4 198 aa23.22■■□□□ 1.31
TRAF4-202ENST00000262396 MROH2BQ7Z745 1585 aa23.21■■□□□ 1.31
TRAF4-202ENST00000262396 NESP48681 1621 aa23.19■■□□□ 1.3
TRAF4-202ENST00000262396 PEG3Q9GZU2 1588 aa23.17■■□□□ 1.3
TRAF4-202ENST00000262396 LAMC3Q9Y6N6 1575 aa23.04■■□□□ 1.28
TRAF4-202ENST00000262396 PDS5BQ9NTI5 1447 aa23.02■■□□□ 1.28
TRAF4-202ENST00000262396 WIZO95785 1651 aa22.93■■□□□ 1.26
TRAF4-202ENST00000262396 CADPSQ9ULU8 1353 aa22.92■■□□□ 1.26
TRAF4-202ENST00000262396 THOC2Q8NI27 1593 aaKnown RBP22.86■■□□□ 1.25
TRAF4-202ENST00000262396 KIF21AQ7Z4S6 1674 aa22.84■■□□□ 1.25
TRAF4-202ENST00000262396 RSF1Q96T23 1441 aaPredicted RBP22.77■■□□□ 1.24
TRAF4-202ENST00000262396 MRC2Q9UBG0 1479 aa22.75■■□□□ 1.23
TRAF4-202ENST00000262396 CEP164Q9UPV0 1460 aa22.71■■□□□ 1.23
TRAF4-202ENST00000262396 TOP2AP11388 1531 aaKnown RBP22.67■■□□□ 1.22
TRAF4-202ENST00000262396 FANCD2Q9BXW9 1451 aa22.66■■□□□ 1.22
TRAF4-202ENST00000262396 WDR62O43379 1518 aa22.62■■□□□ 1.21
TRAF4-202ENST00000262396 CFTRP13569 1480 aa22.6■■□□□ 1.21
TRAF4-202ENST00000262396 CCDC88BA6NC98 1476 aa22.43■■□□□ 1.18
TRAF4-202ENST00000262396 TRIM41Q8WV44 630 aa22.41■■□□□ 1.18
TRAF4-202ENST00000262396 URB2Q14146 1524 aaKnown RBP22.4■■□□□ 1.18
TRAF4-202ENST00000262396 OSCARQ8IYS5 282 aa22.35■■□□□ 1.17
TRAF4-202ENST00000262396 PRDM2Q13029 1718 aa22.29■■□□□ 1.16
TRAF4-202ENST00000262396 IFT140Q96RY7 1462 aa22.23■■□□□ 1.15
TRAF4-202ENST00000262396 ABCC8Q09428 1581 aa22.22■■□□□ 1.15
TRAF4-202ENST00000262396 TOPBP1Q92547 1522 aa22.2■■□□□ 1.14
TRAF4-202ENST00000262396 ZNF608Q9ULD9 1512 aaPredicted RBP22.14■■□□□ 1.13
TRAF4-202ENST00000262396 DNMBPQ6XZF7 1577 aa22.12■■□□□ 1.13
TRAF4-202ENST00000262396 SUPT5HO00267 1087 aaKnown RBP22.06■■□□□ 1.12
TRAF4-202ENST00000262396 FBLN2P98095 1184 aa22.06■■□□□ 1.12
TRAF4-202ENST00000262396 EIF4G3O43432 1585 aaKnown RBP22■■□□□ 1.11
TRAF4-202ENST00000262396 AQRO60306 1485 aaKnown RBP eCLIP22■■□□□ 1.114e-8■■■■■ 48.2
TRAF4-202ENST00000262396 POLA1P09884 1462 aaPredicted RBP21.97■■□□□ 1.11
TRAF4-202ENST00000262396 SOGA1O94964 1423 aa21.97■■□□□ 1.11
TRAF4-202ENST00000262396 RAD54L2Q9Y4B4 1467 aa21.92■■□□□ 1.1
TRAF4-202ENST00000262396 TARBP1Q13395 1621 aaKnown RBP21.91■■□□□ 1.1
TRAF4-202ENST00000262396 TDRD9Q8NDG6 1382 aaKnown RBP21.91■■□□□ 1.1
TRAF4-202ENST00000262396 RIMBP3CA6NJZ7 1639 aa21.88■■□□□ 1.09
TRAF4-202ENST00000262396 RIMBP3BA6NNM3 1639 aa21.88■■□□□ 1.09
TRAF4-202ENST00000262396 RIMBP3Q9UFD9 1639 aa21.88■■□□□ 1.09
TRAF4-202ENST00000262396 FGD5Q6ZNL6 1462 aa21.87■■□□□ 1.09
TRAF4-202ENST00000262396 CHMP7Q8WUX9 453 aaPredicted RBP21.85■■□□□ 1.09
TRAF4-202ENST00000262396 ARHGEF11O15085 1522 aa21.85■■□□□ 1.09
TRAF4-202ENST00000262396 CYB5RLQ6IPT4 315 aa21.84■■□□□ 1.09
TRAF4-202ENST00000262396 CHD1O14646 1710 aa21.8■■□□□ 1.08
TRAF4-202ENST00000262396 CUX1P39880 1505 aa21.8■■□□□ 1.08
TRAF4-202ENST00000262396 SNAPC4Q5SXM2 1469 aa21.78■■□□□ 1.08
TRAF4-202ENST00000262396 WDR97A6NE52 1622 aa21.74■■□□□ 1.07
TRAF4-202ENST00000262396 GRIN2BQ13224 1484 aa21.74■■□□□ 1.07
TRAF4-202ENST00000262396 MAGI1Q96QZ7 1491 aaPredicted RBP21.71■■□□□ 1.07
TRAF4-202ENST00000262396 TRHP20396 242 aaPredicted RBP21.69■■□□□ 1.06
TRAF4-202ENST00000262396 GAPVD1Q14C86 1478 aa21.67■■□□□ 1.06
TRAF4-202ENST00000262396 SYNJ1O43426 1573 aa21.65■■□□□ 1.06
TRAF4-202ENST00000262396 SYNJ2O15056 1496 aa21.64■■□□□ 1.05
TRAF4-202ENST00000262396 WRNQ14191 1432 aaPredicted RBP eCLIP21.62■■□□□ 1.05
TRAF4-202ENST00000262396 ARAP1Q96P48 1450 aa21.61■■□□□ 1.05
TRAF4-202ENST00000262396 ABCA10Q8WWZ4 1543 aa21.59■■□□□ 1.05
TRAF4-202ENST00000262396 PBRM1Q86U86 1689 aa21.56■■□□□ 1.04
TRAF4-202ENST00000262396 CLASP1Q7Z460 1538 aa21.54■■□□□ 1.04
TRAF4-202ENST00000262396 ABCA5Q8WWZ7 1642 aa21.49■■□□□ 1.03
TRAF4-202ENST00000262396 TOP2BQ02880 1626 aa21.47■■□□□ 1.03
TRAF4-202ENST00000262396 BIVM-ERCC5R4GMW8 1640 aa21.43■■□□□ 1.02
TRAF4-202ENST00000262396 GRIN2AQ12879 1464 aa21.42■■□□□ 1.02
TRAF4-202ENST00000262396 FHAD1B1AJZ9 1412 aa21.4■■□□□ 1.02
TRAF4-202ENST00000262396 ADAMTS12P58397 1594 aa21.37■■□□□ 1.01
TRAF4-202ENST00000262396 ERICH3Q5RHP9 1530 aa21.33■■□□□ 1
TRAF4-202ENST00000262396 NUP160Q12769 1436 aa21.29■■□□□ 1
TRAF4-202ENST00000262396 CEP170Q5SW79 1584 aa21.28■■□□□ 1
TRAF4-202ENST00000262396 JPH4Q96JJ6 628 aa21.23■□□□□ 0.99
TRAF4-202ENST00000262396 ERCC6L2Q5T890 1561 aa21.22■□□□□ 0.99
TRAF4-202ENST00000262396 PRG4Q92954 1404 aaPredicted RBP21.21■□□□□ 0.99
TRAF4-202ENST00000262396 KIF27Q86VH2 1401 aa21.19■□□□□ 0.98
TRAF4-202ENST00000262396 NPM1P06748 294 aaKnown RBP eCLIP21.17■□□□□ 0.98
TRAF4-202ENST00000262396 SHROOM2Q13796 1616 aa21.13■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms