RNA–Protein interactions for RNA: ENST00000261980.2

VSX2-201, Transcript of visual system homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VSX2, Length 2,995 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX2-201ENST00000261980 NISCHQ9Y2I1 1504 aa31.73■■■□□ 2.67
VSX2-201ENST00000261980 HRCP23327 699 aa28■■■□□ 2.07
VSX2-201ENST00000261980 PPARGC1BQ86YN6 1023 aaKnown RBP27.99■■■□□ 2.07
VSX2-201ENST00000261980 SHROOM4Q9ULL8 1493 aa27.8■■■□□ 2.04
VSX2-201ENST00000261980 SUPT5HO00267 1087 aaKnown RBP27.79■■■□□ 2.04
VSX2-201ENST00000261980 PCGF6Q9BYE7 350 aa27.79■■■□□ 2.04
VSX2-201ENST00000261980 CCDC180Q9P1Z9 1646 aa27.28■■□□□ 1.96
VSX2-201ENST00000261980 MYO15BQ96JP2 1530 aa27.12■■□□□ 1.93
VSX2-201ENST00000261980 PELP1Q8IZL8 1130 aaKnown RBP26.94■■□□□ 1.9
VSX2-201ENST00000261980 CHIC1Q5VXU3 224 aa26.93■■□□□ 1.9
VSX2-201ENST00000261980 DCAF8L2P0C7V8 631 aa26.87■■□□□ 1.89
VSX2-201ENST00000261980 SCAF1Q9H7N4 1312 aaKnown RBP26.82■■□□□ 1.88
VSX2-201ENST00000261980 ABCC9O60706 1549 aa26.77■■□□□ 1.88
VSX2-201ENST00000261980 LOC105371045A0A1W2PR82 267 aa26.76■■□□□ 1.87
VSX2-201ENST00000261980 ZCCHC6Q5VYS8 1495 aaKnown RBP26.64■■□□□ 1.86
VSX2-201ENST00000261980 TRIM26Q12899 539 aaPredicted RBP26.36■■□□□ 1.81
VSX2-201ENST00000261980 EHMT2Q96KQ7 1210 aa26.19■■□□□ 1.78
VSX2-201ENST00000261980 DCAF1Q9Y4B6 1507 aa26.09■■□□□ 1.77
VSX2-201ENST00000261980 NEUROD1Q13562 356 aa26.07■■□□□ 1.76
VSX2-201ENST00000261980 GTF3C3Q9Y5Q9 886 aa25.99■■□□□ 1.75
VSX2-201ENST00000261980 ZEB1P37275 1124 aaPredicted RBP25.97■■□□□ 1.75
VSX2-201ENST00000261980 ACIN1Q9UKV3 1341 aaKnown RBP25.94■■□□□ 1.74
VSX2-201ENST00000261980 FAM9AQ8IZU1 332 aaPredicted RBP25.88■■□□□ 1.73
VSX2-201ENST00000261980 MYT1Q01538 1121 aa25.75■■□□□ 1.71
VSX2-201ENST00000261980 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.7■■□□□ 1.7
VSX2-201ENST00000261980 YTHDC1Q96MU7 727 aaKnown RBP25.62■■□□□ 1.69
VSX2-201ENST00000261980 SCRIBQ14160 1630 aa25.57■■□□□ 1.68
VSX2-201ENST00000261980 CENPBP07199 599 aaPredicted RBP25.55■■□□□ 1.68
VSX2-201ENST00000261980 CCER1Q8TC90 406 aaPredicted RBP25.53■■□□□ 1.68
VSX2-201ENST00000261980 DIEXFQ68CQ4 756 aaKnown RBP25.52■■□□□ 1.68
VSX2-201ENST00000261980 TTBK1Q5TCY1 1321 aaPredicted RBP25.51■■□□□ 1.67
VSX2-201ENST00000261980 PABPN1Q86U42 306 aaKnown RBP eCLIP25.47■■□□□ 1.67
VSX2-201ENST00000261980 NACADO15069 1562 aa25.47■■□□□ 1.67
VSX2-201ENST00000261980 TRIM41Q8WV44 630 aa25.35■■□□□ 1.65
VSX2-201ENST00000261980 RB1CC1Q8TDY2 1594 aa25.27■■□□□ 1.64
VSX2-201ENST00000261980 MIER1Q8N108 512 aa24.93■■□□□ 1.58
VSX2-201ENST00000261980 CECR2Q9BXF3 1484 aa24.87■■□□□ 1.57
VSX2-201ENST00000261980 RSF1Q96T23 1441 aaPredicted RBP24.82■■□□□ 1.56
VSX2-201ENST00000261980 ZNF316A6NFI3 1004 aaPredicted RBP24.82■■□□□ 1.56
VSX2-201ENST00000261980 UNC13AQ9UPW8 1703 aa24.82■■□□□ 1.56
VSX2-201ENST00000261980 BCL11AQ9H165 835 aa24.77■■□□□ 1.56
VSX2-201ENST00000261980 MROH2BQ7Z745 1585 aa24.66■■□□□ 1.54
VSX2-201ENST00000261980 BICRAQ9NZM4 1560 aa24.65■■□□□ 1.54
VSX2-201ENST00000261980 HNRNPUL2Q1KMD3 747 aaKnown RBP24.52■■□□□ 1.52
VSX2-201ENST00000261980 ANP32EQ9BTT0 268 aa24.51■■□□□ 1.51
VSX2-201ENST00000261980 SUPT16HQ9Y5B9 1047 aaKnown RBP24.51■■□□□ 1.51
VSX2-201ENST00000261980 CSRNP3Q8WYN3 585 aa24.51■■□□□ 1.51
VSX2-201ENST00000261980 BCANQ96GW7 911 aa24.48■■□□□ 1.51
VSX2-201ENST00000261980 WIZO95785 1651 aa24.47■■□□□ 1.51
VSX2-201ENST00000261980 TSHZ2Q9NRE2 1034 aa24.46■■□□□ 1.51
VSX2-201ENST00000261980 BAZ1AQ9NRL2 1556 aaPredicted RBP24.43■■□□□ 1.5
VSX2-201ENST00000261980 DNAJC5BQ9UF47 199 aa24.42■■□□□ 1.5
VSX2-201ENST00000261980 SMARCA4P51532 1647 aa24.32■■□□□ 1.48
VSX2-201ENST00000261980 UBTFP17480 764 aaKnown RBP24.19■■□□□ 1.46
VSX2-201ENST00000261980 RANGAP1P46060 587 aaPredicted RBP24.15■■□□□ 1.46
VSX2-201ENST00000261980 KCNH8Q96L42 1107 aa24.12■■□□□ 1.45
VSX2-201ENST00000261980 ITGAEP38570 1179 aa24.04■■□□□ 1.44
VSX2-201ENST00000261980 TOP2AP11388 1531 aaKnown RBP24.04■■□□□ 1.44
VSX2-201ENST00000261980 CEP162Q5TB80 1403 aa24.03■■□□□ 1.44
VSX2-201ENST00000261980 FKBP8Q14318 412 aa24.01■■□□□ 1.43
VSX2-201ENST00000261980 EIF4G1Q04637 1599 aaKnown RBP23.98■■□□□ 1.43
VSX2-201ENST00000261980 CCDC88BA6NC98 1476 aa23.97■■□□□ 1.43
VSX2-201ENST00000261980 ATAD2BQ9ULI0 1458 aa23.94■■□□□ 1.42
VSX2-201ENST00000261980 RBM19Q9Y4C8 960 aaKnown RBP23.9■■□□□ 1.42
VSX2-201ENST00000261980 SMARCA2P51531 1590 aa23.89■■□□□ 1.41
VSX2-201ENST00000261980 BAZ1BQ9UIG0 1483 aaKnown RBP23.86■■□□□ 1.41
VSX2-201ENST00000261980 CC2D2AQ9P2K1 1620 aa23.84■■□□□ 1.41
VSX2-201ENST00000261980 PEG3Q9GZU2 1588 aa23.83■■□□□ 1.4
VSX2-201ENST00000261980 PRKCSHP14314 528 aaPredicted RBP23.81■■□□□ 1.4
VSX2-201ENST00000261980 SOGA1O94964 1423 aa23.8■■□□□ 1.4
VSX2-201ENST00000261980 WRNQ14191 1432 aaPredicted RBP eCLIP23.8■■□□□ 1.4
VSX2-201ENST00000261980 CLSPNQ9HAW4 1339 aa23.79■■□□□ 1.4
VSX2-201ENST00000261980 MSH5O43196 834 aa23.74■■□□□ 1.39
VSX2-201ENST00000261980 TRIM52Q96A61 297 aa23.73■■□□□ 1.39
VSX2-201ENST00000261980 APLP2Q06481 763 aa23.72■■□□□ 1.39
VSX2-201ENST00000261980 ABCC8Q09428 1581 aa23.72■■□□□ 1.39
VSX2-201ENST00000261980 RUSC2Q8N2Y8 1516 aa23.67■■□□□ 1.38
VSX2-201ENST00000261980 ERICH6Q7L0X2 663 aa23.66■■□□□ 1.38
VSX2-201ENST00000261980 NEFLP07196 543 aa23.65■■□□□ 1.38
VSX2-201ENST00000261980 TNIKQ9UKE5 1360 aa23.64■■□□□ 1.37
VSX2-201ENST00000261980 IRX6P78412 446 aaPredicted RBP23.63■■□□□ 1.37
VSX2-201ENST00000261980 HIRIP3Q9BW71 556 aaPredicted RBP23.62■■□□□ 1.37
VSX2-201ENST00000261980 DDX10Q13206 875 aaKnown RBP23.61■■□□□ 1.37
VSX2-201ENST00000261980 NCAPD3P42695 1498 aa23.6■■□□□ 1.37
VSX2-201ENST00000261980 HMGXB3Q12766 1538 aa23.48■■□□□ 1.35
VSX2-201ENST00000261980 DHX57Q6P158 1386 aaKnown RBP23.47■■□□□ 1.35
VSX2-201ENST00000261980 ANO8Q9HCE9 1232 aaPredicted RBP23.42■■□□□ 1.34
VSX2-201ENST00000261980 NBR1Q14596 966 aa23.4■■□□□ 1.34
VSX2-201ENST00000261980 DEKP35659 375 aaKnown RBP23.38■■□□□ 1.33
VSX2-201ENST00000261980 CLIP1P30622 1438 aa23.36■■□□□ 1.33
VSX2-201ENST00000261980 NESP48681 1621 aa23.34■■□□□ 1.33
VSX2-201ENST00000261980 GOLGA3Q08378 1498 aa23.3■■□□□ 1.32
VSX2-201ENST00000261980 KANK4Q5T7N3 995 aaPredicted RBP23.29■■□□□ 1.32
VSX2-201ENST00000261980 CDK11AQ9UQ88 783 aaPredicted RBP23.28■■□□□ 1.32
VSX2-201ENST00000261980 CCDC136Q96JN2 1154 aa23.27■■□□□ 1.32
VSX2-201ENST00000261980 SIN3AQ96ST3 1273 aa23.25■■□□□ 1.31
VSX2-201ENST00000261980 SYNJ1O43426 1573 aa23.24■■□□□ 1.31
VSX2-201ENST00000261980 RTN4Q9NQC3 1192 aaKnown RBP23.22■■□□□ 1.31
VSX2-201ENST00000261980 VPS8Q8N3P4 1428 aa23.18■■□□□ 1.3
VSX2-201ENST00000261980 CFTRP13569 1480 aa23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 92.7 ms