RNA–Protein interactions for RNA: ENST00000258349.8

RC3H1-201, Transcript of ring finger and CCCH-type domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RC3H1, Length 10,988 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1-201ENST00000258349 DCAF8L2P0C7V8 631 aa7.85□□□□□ -1.15
RC3H1-201ENST00000258349 PELP1Q8IZL8 1130 aaKnown RBP7.8□□□□□ -1.16
RC3H1-201ENST00000258349 NISCHQ9Y2I1 1504 aa7.8□□□□□ -1.16
RC3H1-201ENST00000258349 SUPT5HO00267 1087 aaKnown RBP7.58□□□□□ -1.2
RC3H1-201ENST00000258349 SHROOM4Q9ULL8 1493 aa7.47□□□□□ -1.21
RC3H1-201ENST00000258349 MYT1Q01538 1121 aa7.45□□□□□ -1.22
RC3H1-201ENST00000258349 APLP2Q06481 763 aa7.44□□□□□ -1.22
RC3H1-201ENST00000258349 CCER1Q8TC90 406 aaPredicted RBP7.41□□□□□ -1.22
RC3H1-201ENST00000258349 CENPBP07199 599 aaPredicted RBP7.39□□□□□ -1.23
RC3H1-201ENST00000258349 ZEB1P37275 1124 aaPredicted RBP7.38□□□□□ -1.23
RC3H1-201ENST00000258349 ERICH6Q7L0X2 663 aa7.37□□□□□ -1.23
RC3H1-201ENST00000258349 FAM9AQ8IZU1 332 aaPredicted RBP7.33□□□□□ -1.24
RC3H1-201ENST00000258349 EHMT2Q96KQ7 1210 aa7.31□□□□□ -1.24
RC3H1-201ENST00000258349 PCGF6Q9BYE7 350 aa7.28□□□□□ -1.24
RC3H1-201ENST00000258349 NEFLP07196 543 aa7.23□□□□□ -1.25
RC3H1-201ENST00000258349 TTBK1Q5TCY1 1321 aaPredicted RBP7.14□□□□□ -1.27
RC3H1-201ENST00000258349 YTHDC1Q96MU7 727 aaKnown RBP7.1□□□□□ -1.27
RC3H1-201ENST00000258349 TRIM41Q8WV44 630 aa7.1□□□□□ -1.27
RC3H1-201ENST00000258349 DAXXQ9UER7 740 aaPredicted RBP7.06□□□□□ -1.28
RC3H1-201ENST00000258349 UBTFP17480 764 aaKnown RBP7.04□□□□□ -1.28
RC3H1-201ENST00000258349 TRIM26Q12899 539 aaPredicted RBP7.02□□□□□ -1.28
RC3H1-201ENST00000258349 RANGAP1P46060 587 aaPredicted RBP7.01□□□□□ -1.29
RC3H1-201ENST00000258349 ATP1B4Q9UN42 357 aaPredicted RBP7.01□□□□□ -1.29
RC3H1-201ENST00000258349 HRCP23327 699 aa6.96□□□□□ -1.3
RC3H1-201ENST00000258349 RTL5Q5HYW3 569 aaPredicted RBP6.91□□□□□ -1.3
RC3H1-201ENST00000258349 ZNF316A6NFI3 1004 aaPredicted RBP6.9□□□□□ -1.3
RC3H1-201ENST00000258349 PPARGC1BQ86YN6 1023 aaKnown RBP6.82□□□□□ -1.32
RC3H1-201ENST00000258349 DIEXFQ68CQ4 756 aaKnown RBP6.82□□□□□ -1.32
RC3H1-201ENST00000258349 POLR3GLQ9BT43 218 aa6.8□□□□□ -1.32
RC3H1-201ENST00000258349 CCDC180Q9P1Z9 1646 aa6.8□□□□□ -1.32
RC3H1-201ENST00000258349 CLSPNQ9HAW4 1339 aa6.78□□□□□ -1.32
RC3H1-201ENST00000258349 ITGAEP38570 1179 aa6.77□□□□□ -1.33
RC3H1-201ENST00000258349 HNRNPUL2Q1KMD3 747 aaKnown RBP6.74□□□□□ -1.33
RC3H1-201ENST00000258349 MYT1LQ9UL68 1186 aa6.74□□□□□ -1.33
RC3H1-201ENST00000258349 CDK11AQ9UQ88 783 aaPredicted RBP6.73□□□□□ -1.33
RC3H1-201ENST00000258349 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.73□□□□□ -1.33
RC3H1-201ENST00000258349 CHIC1Q5VXU3 224 aa6.71□□□□□ -1.33
RC3H1-201ENST00000258349 SLC4A1APQ9BWU0 796 aaKnown RBP6.71□□□□□ -1.34
RC3H1-201ENST00000258349 LOC105371045A0A1W2PR82 267 aa6.7□□□□□ -1.34
RC3H1-201ENST00000258349 ANP32CO43423 234 aa6.7□□□□□ -1.34
RC3H1-201ENST00000258349 ZBTB47Q9UFB7 747 aaPredicted RBP6.68□□□□□ -1.34
RC3H1-201ENST00000258349 GTF3C3Q9Y5Q9 886 aa6.67□□□□□ -1.34
RC3H1-201ENST00000258349 ANP32AP39687 249 aaKnown RBP6.67□□□□□ -1.34
RC3H1-201ENST00000258349 FAM50AQ14320 339 aaKnown RBP6.66□□□□□ -1.34
RC3H1-201ENST00000258349 CNGB1Q14028 1251 aaPredicted RBP6.65□□□□□ -1.35
RC3H1-201ENST00000258349 SCRIBQ14160 1630 aa6.64□□□□□ -1.35
RC3H1-201ENST00000258349 DCAF1Q9Y4B6 1507 aa6.64□□□□□ -1.35
RC3H1-201ENST00000258349 CANXP27824 592 aaKnown RBP6.63□□□□□ -1.35
RC3H1-201ENST00000258349 GLIPR1L2Q4G1C9 344 aa6.61□□□□□ -1.35
RC3H1-201ENST00000258349 ANP32BQ92688 251 aaKnown RBP6.61□□□□□ -1.35
RC3H1-201ENST00000258349 BCANQ96GW7 911 aa6.61□□□□□ -1.35
RC3H1-201ENST00000258349 TRIM52Q96A61 297 aa6.61□□□□□ -1.35
RC3H1-201ENST00000258349 NEUROD1Q13562 356 aa6.6□□□□□ -1.35
RC3H1-201ENST00000258349 ACIN1Q9UKV3 1341 aaKnown RBP6.6□□□□□ -1.35
RC3H1-201ENST00000258349 NEFMP07197 916 aa6.57□□□□□ -1.36
RC3H1-201ENST00000258349 UPF2Q9HAU5 1272 aaKnown RBP6.54□□□□□ -1.36
RC3H1-201ENST00000258349 ZNF326Q5BKZ1 582 aaKnown RBP6.54□□□□□ -1.36
RC3H1-201ENST00000258349 HSP90AA1P07900 732 aaKnown RBP6.53□□□□□ -1.36
RC3H1-201ENST00000258349 ABCC9O60706 1549 aa6.5□□□□□ -1.37
RC3H1-201ENST00000258349 TONSLQ96HA7 1378 aa6.5□□□□□ -1.37
RC3H1-201ENST00000258349 NPM2Q86SE8 214 aaKnown RBP6.49□□□□□ -1.37
RC3H1-201ENST00000258349 EIF5BO60841 1220 aaKnown RBP6.49□□□□□ -1.37
RC3H1-201ENST00000258349 ZCCHC6Q5VYS8 1495 aaKnown RBP6.47□□□□□ -1.37
RC3H1-201ENST00000258349 SLC24A1O60721 1099 aa6.47□□□□□ -1.37
RC3H1-201ENST00000258349 FKBP8Q14318 412 aa6.46□□□□□ -1.38
RC3H1-201ENST00000258349 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.43□□□□□ -1.38
RC3H1-201ENST00000258349 BCL11AQ9H165 835 aa6.43□□□□□ -1.38
RC3H1-201ENST00000258349 DDRGK1Q96HY6 314 aa6.42□□□□□ -1.38
RC3H1-201ENST00000258349 RB1CC1Q8TDY2 1594 aa6.42□□□□□ -1.38
RC3H1-201ENST00000258349 ANP32EQ9BTT0 268 aa6.42□□□□□ -1.38
RC3H1-201ENST00000258349 HNRNPUQ00839 825 aaKnown RBP eCLIP6.42□□□□□ -1.38
RC3H1-201ENST00000258349 NBR1Q14596 966 aa6.42□□□□□ -1.38
RC3H1-201ENST00000258349 CCDC136Q96JN2 1154 aa6.42□□□□□ -1.38
RC3H1-201ENST00000258349 BECN1Q14457 450 aa6.41□□□□□ -1.38
RC3H1-201ENST00000258349 MYH16Q9H6N6 1097 aa6.4□□□□□ -1.39
RC3H1-201ENST00000258349 TNNT2P45379 298 aaPredicted RBP6.38□□□□□ -1.39
RC3H1-201ENST00000258349 CSRNP3Q8WYN3 585 aa6.38□□□□□ -1.39
RC3H1-201ENST00000258349 TMC1Q8TDI8 760 aa6.37□□□□□ -1.39
RC3H1-201ENST00000258349 WDR43Q15061 677 aaKnown RBP eCLIP6.37□□□□□ -1.39
RC3H1-201ENST00000258349 PABPN1Q86U42 306 aaKnown RBP eCLIP6.36□□□□□ -1.39
RC3H1-201ENST00000258349 FAM9BQ8IZU0 186 aa6.36□□□□□ -1.39
RC3H1-201ENST00000258349 GOLGA3Q08378 1498 aa6.36□□□□□ -1.39
RC3H1-201ENST00000258349 FBLN2P98095 1184 aa6.36□□□□□ -1.39
RC3H1-201ENST00000258349 EEA1Q15075 1411 aa6.35□□□□□ -1.39
RC3H1-201ENST00000258349 NACADO15069 1562 aa6.35□□□□□ -1.39
RC3H1-201ENST00000258349 TRIM44Q96DX7 344 aaPredicted RBP6.35□□□□□ -1.39
RC3H1-201ENST00000258349 GOLGA6L22H0YM25 854 aa6.35□□□□□ -1.39
RC3H1-201ENST00000258349 CLIP1P30622 1438 aa6.34□□□□□ -1.39
RC3H1-201ENST00000258349 CDK11BP21127 795 aaKnown RBP6.34□□□□□ -1.39
RC3H1-201ENST00000258349 SCAF1Q9H7N4 1312 aaKnown RBP6.34□□□□□ -1.39
RC3H1-201ENST00000258349 DDX10Q13206 875 aaKnown RBP6.34□□□□□ -1.39
RC3H1-201ENST00000258349 ZNF777Q9ULD5 760 aaPredicted RBP6.34□□□□□ -1.39
RC3H1-201ENST00000258349 NCLP19338 710 aaKnown RBP6.33□□□□□ -1.4
RC3H1-201ENST00000258349 ESF1Q9H501 851 aaKnown RBP6.33□□□□□ -1.4
RC3H1-201ENST00000258349 KAT6BQ8WYB5 2073 aa6.33□□□□□ -1.4
RC3H1-201ENST00000258349 RSF1Q96T23 1441 aaPredicted RBP6.33□□□□□ -1.4
RC3H1-201ENST00000258349 CASC1Q6TDU7 716 aa6.33□□□□□ -1.4
RC3H1-201ENST00000258349 P3H3Q8IVL6 736 aa6.32□□□□□ -1.4
RC3H1-201ENST00000258349 MRS2Q9HD23 443 aa6.32□□□□□ -1.4
RC3H1-201ENST00000258349 ARXQ96QS3 562 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms