RNA–Protein interactions for RNA: ENST00000254644.12

MRPL35-201, Transcript of mitochondrial ribosomal protein L35, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene MRPL35, Length 1,061 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL35-201ENST00000254644 NISCHQ9Y2I1 1504 aa32.83■■■□□ 2.85
MRPL35-201ENST00000254644 CCDC180Q9P1Z9 1646 aa29.49■■■□□ 2.31
MRPL35-201ENST00000254644 ABCC9O60706 1549 aa29.3■■■□□ 2.28
MRPL35-201ENST00000254644 RB1CC1Q8TDY2 1594 aa27.98■■■□□ 2.07
MRPL35-201ENST00000254644 NACADO15069 1562 aa27.83■■■□□ 2.05
MRPL35-201ENST00000254644 MYO15BQ96JP2 1530 aa27.52■■■□□ 2
MRPL35-201ENST00000254644 DCAF8L2P0C7V8 631 aa27.51■■□□□ 1.99
MRPL35-201ENST00000254644 DNAJC5BQ9UF47 199 aa27.5■■□□□ 1.99
MRPL35-201ENST00000254644 UNC13AQ9UPW8 1703 aa27.47■■□□□ 1.99
MRPL35-201ENST00000254644 PABPN1Q86U42 306 aaKnown RBP eCLIP27.27■■□□□ 1.96
MRPL35-201ENST00000254644 BICRAQ9NZM4 1560 aa27.22■■□□□ 1.95
MRPL35-201ENST00000254644 ZCCHC6Q5VYS8 1495 aaKnown RBP27.22■■□□□ 1.95
MRPL35-201ENST00000254644 DCAF1Q9Y4B6 1507 aa27.18■■□□□ 1.94
MRPL35-201ENST00000254644 SHROOM4Q9ULL8 1493 aa26.85■■□□□ 1.89
MRPL35-201ENST00000254644 SCRIBQ14160 1630 aa26.76■■□□□ 1.87
MRPL35-201ENST00000254644 CC2D2AQ9P2K1 1620 aa26.54■■□□□ 1.84
MRPL35-201ENST00000254644 EIF4G1Q04637 1599 aaKnown RBP26.5■■□□□ 1.83
MRPL35-201ENST00000254644 CECR2Q9BXF3 1484 aa26.41■■□□□ 1.82
MRPL35-201ENST00000254644 NCAPD3P42695 1498 aa25.7■■□□□ 1.7
MRPL35-201ENST00000254644 ATAD2BQ9ULI0 1458 aa25.6■■□□□ 1.69
MRPL35-201ENST00000254644 SMARCA4P51532 1647 aa25.6■■□□□ 1.69
MRPL35-201ENST00000254644 SMARCA2P51531 1590 aa25.52■■□□□ 1.68
MRPL35-201ENST00000254644 HMGXB3Q12766 1538 aa25.51■■□□□ 1.67
MRPL35-201ENST00000254644 BAZ1AQ9NRL2 1556 aaPredicted RBP25.47■■□□□ 1.67
MRPL35-201ENST00000254644 PEG3Q9GZU2 1588 aa25.41■■□□□ 1.66
MRPL35-201ENST00000254644 BAZ1BQ9UIG0 1483 aaKnown RBP25.31■■□□□ 1.64
MRPL35-201ENST00000254644 CUX2O14529 1486 aa25.28■■□□□ 1.64
MRPL35-201ENST00000254644 MROH2BQ7Z745 1585 aa25.28■■□□□ 1.64
MRPL35-201ENST00000254644 ERCC6Q03468 1493 aa25.26■■□□□ 1.63
MRPL35-201ENST00000254644 NESP48681 1621 aa25.23■■□□□ 1.63
MRPL35-201ENST00000254644 DNAJC5Q9H3Z4 198 aa25.2■■□□□ 1.62
MRPL35-201ENST00000254644 LAMC3Q9Y6N6 1575 aa25.1■■□□□ 1.61
MRPL35-201ENST00000254644 THOC2Q8NI27 1593 aaKnown RBP25.01■■□□□ 1.59
MRPL35-201ENST00000254644 WIZO95785 1651 aa25.01■■□□□ 1.59
MRPL35-201ENST00000254644 KIF21AQ7Z4S6 1674 aa24.96■■□□□ 1.59
MRPL35-201ENST00000254644 PDS5BQ9NTI5 1447 aa24.9■■□□□ 1.58
MRPL35-201ENST00000254644 CADPSQ9ULU8 1353 aa24.88■■□□□ 1.57
MRPL35-201ENST00000254644 RSF1Q96T23 1441 aaPredicted RBP24.78■■□□□ 1.56
MRPL35-201ENST00000254644 MRC2Q9UBG0 1479 aa24.69■■□□□ 1.54
MRPL35-201ENST00000254644 WDR62O43379 1518 aa24.67■■□□□ 1.54
MRPL35-201ENST00000254644 TOP2AP11388 1531 aaKnown RBP24.66■■□□□ 1.54
MRPL35-201ENST00000254644 CFTRP13569 1480 aa24.64■■□□□ 1.53
MRPL35-201ENST00000254644 CEP164Q9UPV0 1460 aa24.58■■□□□ 1.53
MRPL35-201ENST00000254644 FANCD2Q9BXW9 1451 aa24.58■■□□□ 1.52
MRPL35-201ENST00000254644 PRDM2Q13029 1718 aa24.47■■□□□ 1.51
MRPL35-201ENST00000254644 URB2Q14146 1524 aaKnown RBP24.4■■□□□ 1.5
MRPL35-201ENST00000254644 CCDC88BA6NC98 1476 aa24.38■■□□□ 1.49
MRPL35-201ENST00000254644 TOPBP1Q92547 1522 aa24.14■■□□□ 1.45
MRPL35-201ENST00000254644 IFT140Q96RY7 1462 aa24.11■■□□□ 1.45
MRPL35-201ENST00000254644 OSCARQ8IYS5 282 aa24.1■■□□□ 1.45
MRPL35-201ENST00000254644 ABCC8Q09428 1581 aa24.1■■□□□ 1.45
MRPL35-201ENST00000254644 ZNF608Q9ULD9 1512 aaPredicted RBP24.07■■□□□ 1.44
MRPL35-201ENST00000254644 DNMBPQ6XZF7 1577 aa24.07■■□□□ 1.44
MRPL35-201ENST00000254644 TRIM41Q8WV44 630 aa23.99■■□□□ 1.43
MRPL35-201ENST00000254644 TARBP1Q13395 1621 aaKnown RBP23.97■■□□□ 1.43
MRPL35-201ENST00000254644 EIF4G3O43432 1585 aaKnown RBP23.95■■□□□ 1.43
MRPL35-201ENST00000254644 POLA1P09884 1462 aaPredicted RBP23.89■■□□□ 1.42
MRPL35-201ENST00000254644 AQRO60306 1485 aaKnown RBP eCLIP23.84■■□□□ 1.41
MRPL35-201ENST00000254644 RIMBP3CA6NJZ7 1639 aa23.83■■□□□ 1.41
MRPL35-201ENST00000254644 RIMBP3BA6NNM3 1639 aa23.83■■□□□ 1.41
MRPL35-201ENST00000254644 RIMBP3Q9UFD9 1639 aa23.83■■□□□ 1.41
MRPL35-201ENST00000254644 CHD1O14646 1710 aa23.8■■□□□ 1.4
MRPL35-201ENST00000254644 RAD54L2Q9Y4B4 1467 aa23.78■■□□□ 1.4
MRPL35-201ENST00000254644 SOGA1O94964 1423 aa23.76■■□□□ 1.39
MRPL35-201ENST00000254644 CUX1P39880 1505 aa23.75■■□□□ 1.39
MRPL35-201ENST00000254644 ARHGEF11O15085 1522 aa23.74■■□□□ 1.39
MRPL35-201ENST00000254644 FGD5Q6ZNL6 1462 aa23.74■■□□□ 1.39
MRPL35-201ENST00000254644 WDR97A6NE52 1622 aa23.73■■□□□ 1.39
MRPL35-201ENST00000254644 TDRD9Q8NDG6 1382 aaKnown RBP23.69■■□□□ 1.38
MRPL35-201ENST00000254644 SUPT5HO00267 1087 aaKnown RBP23.59■■□□□ 1.37
MRPL35-201ENST00000254644 SNAPC4Q5SXM2 1469 aa23.59■■□□□ 1.37
MRPL35-201ENST00000254644 FBLN2P98095 1184 aa23.58■■□□□ 1.37
MRPL35-201ENST00000254644 MAGI1Q96QZ7 1491 aaPredicted RBP23.56■■□□□ 1.36
MRPL35-201ENST00000254644 GRIN2BQ13224 1484 aa23.56■■□□□ 1.36
MRPL35-201ENST00000254644 PBRM1Q86U86 1689 aa23.53■■□□□ 1.36
MRPL35-201ENST00000254644 CLASP1Q7Z460 1538 aa23.53■■□□□ 1.36
MRPL35-201ENST00000254644 ARAP1Q96P48 1450 aa23.51■■□□□ 1.35
MRPL35-201ENST00000254644 ABCA10Q8WWZ4 1543 aa23.5■■□□□ 1.35
MRPL35-201ENST00000254644 CYB5RLQ6IPT4 315 aa23.5■■□□□ 1.35
MRPL35-201ENST00000254644 GAPVD1Q14C86 1478 aa23.49■■□□□ 1.35
MRPL35-201ENST00000254644 ABCA5Q8WWZ7 1642 aa23.48■■□□□ 1.35
MRPL35-201ENST00000254644 SYNJ2O15056 1496 aa23.48■■□□□ 1.35
MRPL35-201ENST00000254644 SYNJ1O43426 1573 aa23.47■■□□□ 1.35
MRPL35-201ENST00000254644 CHMP7Q8WUX9 453 aaPredicted RBP23.46■■□□□ 1.35
MRPL35-201ENST00000254644 BIVM-ERCC5R4GMW8 1640 aa23.43■■□□□ 1.34
MRPL35-201ENST00000254644 TOP2BQ02880 1626 aa23.41■■□□□ 1.34
MRPL35-201ENST00000254644 WRNQ14191 1432 aaPredicted RBP eCLIP23.37■■□□□ 1.33
MRPL35-201ENST00000254644 ADAMTS12P58397 1594 aa23.27■■□□□ 1.32
MRPL35-201ENST00000254644 GRIN2AQ12879 1464 aa23.26■■□□□ 1.31
MRPL35-201ENST00000254644 ERICH3Q5RHP9 1530 aa23.22■■□□□ 1.31
MRPL35-201ENST00000254644 NUP160Q12769 1436 aa23.21■■□□□ 1.31
MRPL35-201ENST00000254644 CEP170Q5SW79 1584 aa23.19■■□□□ 1.3
MRPL35-201ENST00000254644 FHAD1B1AJZ9 1412 aa23.18■■□□□ 1.3
MRPL35-201ENST00000254644 TRHP20396 242 aaPredicted RBP23.16■■□□□ 1.3
MRPL35-201ENST00000254644 SHROOM2Q13796 1616 aa23.15■■□□□ 1.3
MRPL35-201ENST00000254644 ERCC6L2Q5T890 1561 aa23.14■■□□□ 1.29
MRPL35-201ENST00000254644 RUSC2Q8N2Y8 1516 aa22.94■■□□□ 1.26
MRPL35-201ENST00000254644 JPH4Q96JJ6 628 aa22.93■■□□□ 1.26
MRPL35-201ENST00000254644 PRG4Q92954 1404 aaPredicted RBP22.92■■□□□ 1.26
MRPL35-201ENST00000254644 IGF1RP08069 1367 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms