RNA–Protein interactions for RNA: ENST00000231130.3

PCDHB3-201, Transcript of protocadherin beta 3, humanhuman

APPRIS P1 BASIC

Gene PCDHB3, Length 3,355 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3-201ENST00000231130 NISCHQ9Y2I1 1504 aa26.73■■□□□ 1.87
PCDHB3-201ENST00000231130 SHROOM4Q9ULL8 1493 aa24.27■■□□□ 1.48
PCDHB3-201ENST00000231130 SUPT5HO00267 1087 aaKnown RBP24.12■■□□□ 1.45
PCDHB3-201ENST00000231130 HRCP23327 699 aa23.58■■□□□ 1.36
PCDHB3-201ENST00000231130 PCGF6Q9BYE7 350 aa23.53■■□□□ 1.36
PCDHB3-201ENST00000231130 PPARGC1BQ86YN6 1023 aaKnown RBP23.41■■□□□ 1.34
PCDHB3-201ENST00000231130 PELP1Q8IZL8 1130 aaKnown RBP23.39■■□□□ 1.34
PCDHB3-201ENST00000231130 DCAF8L2P0C7V8 631 aa23.36■■□□□ 1.33
PCDHB3-201ENST00000231130 CHIC1Q5VXU3 224 aa23.24■■□□□ 1.31
PCDHB3-201ENST00000231130 MYO15BQ96JP2 1530 aa23.2■■□□□ 1.3
PCDHB3-201ENST00000231130 LOC105371045A0A1W2PR82 267 aa22.98■■□□□ 1.27
PCDHB3-201ENST00000231130 SCAF1Q9H7N4 1312 aaKnown RBP22.64■■□□□ 1.21
PCDHB3-201ENST00000231130 EHMT2Q96KQ7 1210 aa22.62■■□□□ 1.21
PCDHB3-201ENST00000231130 ZCCHC6Q5VYS8 1495 aaKnown RBP22.61■■□□□ 1.21
PCDHB3-201ENST00000231130 MYT1Q01538 1121 aa22.57■■□□□ 1.2
PCDHB3-201ENST00000231130 TRIM26Q12899 539 aaPredicted RBP22.52■■□□□ 1.2
PCDHB3-201ENST00000231130 FAM9AQ8IZU1 332 aaPredicted RBP22.44■■□□□ 1.18
PCDHB3-201ENST00000231130 DCAF1Q9Y4B6 1507 aa22.36■■□□□ 1.17
PCDHB3-201ENST00000231130 TRIM41Q8WV44 630 aa22.14■■□□□ 1.14
PCDHB3-201ENST00000231130 ZEB1P37275 1124 aaPredicted RBP22.13■■□□□ 1.13
PCDHB3-201ENST00000231130 GTF3C3Q9Y5Q9 886 aa21.99■■□□□ 1.11
PCDHB3-201ENST00000231130 CCDC180Q9P1Z9 1646 aa21.97■■□□□ 1.11
PCDHB3-201ENST00000231130 TTBK1Q5TCY1 1321 aaPredicted RBP21.95■■□□□ 1.1
PCDHB3-201ENST00000231130 NEUROD1Q13562 356 aa21.95■■□□□ 1.1
PCDHB3-201ENST00000231130 ACIN1Q9UKV3 1341 aaKnown RBP21.95■■□□□ 1.1
PCDHB3-201ENST00000231130 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.91■■□□□ 1.1
PCDHB3-201ENST00000231130 CCER1Q8TC90 406 aaPredicted RBP21.83■■□□□ 1.09
PCDHB3-201ENST00000231130 CENPBP07199 599 aaPredicted RBP21.79■■□□□ 1.08
PCDHB3-201ENST00000231130 DIEXFQ68CQ4 756 aaKnown RBP21.6■■□□□ 1.05
PCDHB3-201ENST00000231130 RSF1Q96T23 1441 aaPredicted RBP21.58■■□□□ 1.04
PCDHB3-201ENST00000231130 YTHDC1Q96MU7 727 aaKnown RBP21.57■■□□□ 1.04
PCDHB3-201ENST00000231130 SCRIBQ14160 1630 aa21.46■■□□□ 1.03
PCDHB3-201ENST00000231130 RB1CC1Q8TDY2 1594 aa21.44■■□□□ 1.02
PCDHB3-201ENST00000231130 ABCC9O60706 1549 aa21.4■■□□□ 1.02
PCDHB3-201ENST00000231130 BCL11AQ9H165 835 aa21.3■■□□□ 1
PCDHB3-201ENST00000231130 CECR2Q9BXF3 1484 aa21.17■□□□□ 0.98
PCDHB3-201ENST00000231130 UBTFP17480 764 aaKnown RBP21.17■□□□□ 0.98
PCDHB3-201ENST00000231130 HNRNPUL2Q1KMD3 747 aaKnown RBP21.15■□□□□ 0.98
PCDHB3-201ENST00000231130 ZNF316A6NFI3 1004 aaPredicted RBP21.14■□□□□ 0.97
PCDHB3-201ENST00000231130 RANGAP1P46060 587 aaPredicted RBP21.09■□□□□ 0.97
PCDHB3-201ENST00000231130 MIER1Q8N108 512 aa21.09■□□□□ 0.97
PCDHB3-201ENST00000231130 MROH2BQ7Z745 1585 aa21.01■□□□□ 0.95
PCDHB3-201ENST00000231130 ANP32EQ9BTT0 268 aa20.94■□□□□ 0.94
PCDHB3-201ENST00000231130 CEP162Q5TB80 1403 aa20.92■□□□□ 0.94
PCDHB3-201ENST00000231130 WIZO95785 1651 aa20.91■□□□□ 0.94
PCDHB3-201ENST00000231130 ABCC8Q09428 1581 aa20.87■□□□□ 0.93
PCDHB3-201ENST00000231130 CCDC88BA6NC98 1476 aa20.85■□□□□ 0.93
PCDHB3-201ENST00000231130 SOGA1O94964 1423 aa20.85■□□□□ 0.93
PCDHB3-201ENST00000231130 CSRNP3Q8WYN3 585 aa20.84■□□□□ 0.93
PCDHB3-201ENST00000231130 APLP2Q06481 763 aa20.77■□□□□ 0.92
PCDHB3-201ENST00000231130 RUSC2Q8N2Y8 1516 aa20.73■□□□□ 0.91
PCDHB3-201ENST00000231130 TNIKQ9UKE5 1360 aa20.68■□□□□ 0.9
PCDHB3-201ENST00000231130 WRNQ14191 1432 aaPredicted RBP eCLIP20.68■□□□□ 0.9
PCDHB3-201ENST00000231130 PRKCSHP14314 528 aaPredicted RBP20.67■□□□□ 0.9
PCDHB3-201ENST00000231130 TSHZ2Q9NRE2 1034 aa20.66■□□□□ 0.9
PCDHB3-201ENST00000231130 SUPT16HQ9Y5B9 1047 aaKnown RBP20.64■□□□□ 0.89
PCDHB3-201ENST00000231130 BCANQ96GW7 911 aa20.62■□□□□ 0.89
PCDHB3-201ENST00000231130 ITGAEP38570 1179 aa20.55■□□□□ 0.88
PCDHB3-201ENST00000231130 BAZ1AQ9NRL2 1556 aaPredicted RBP20.51■□□□□ 0.87
PCDHB3-201ENST00000231130 GOLGA3Q08378 1498 aa20.46■□□□□ 0.87
PCDHB3-201ENST00000231130 PABPN1Q86U42 306 aaKnown RBP eCLIP20.46■□□□□ 0.87
PCDHB3-201ENST00000231130 CLIP1P30622 1438 aa20.45■□□□□ 0.86
PCDHB3-201ENST00000231130 NACADO15069 1562 aa20.42■□□□□ 0.86
PCDHB3-201ENST00000231130 KCNH8Q96L42 1107 aa20.42■□□□□ 0.86
PCDHB3-201ENST00000231130 EIF4G1Q04637 1599 aaKnown RBP20.4■□□□□ 0.86
PCDHB3-201ENST00000231130 ERICH6Q7L0X2 663 aa20.34■□□□□ 0.85
PCDHB3-201ENST00000231130 EEA1Q15075 1411 aa20.33■□□□□ 0.85
PCDHB3-201ENST00000231130 TOP2AP11388 1531 aaKnown RBP20.33■□□□□ 0.85
PCDHB3-201ENST00000231130 SMARCA2P51531 1590 aa20.32■□□□□ 0.84
PCDHB3-201ENST00000231130 KANK4Q5T7N3 995 aaPredicted RBP20.28■□□□□ 0.84
PCDHB3-201ENST00000231130 FKBP8Q14318 412 aa20.27■□□□□ 0.84
PCDHB3-201ENST00000231130 VPS8Q8N3P4 1428 aa20.26■□□□□ 0.83
PCDHB3-201ENST00000231130 CLSPNQ9HAW4 1339 aa20.26■□□□□ 0.83
PCDHB3-201ENST00000231130 CEP164Q9UPV0 1460 aa20.25■□□□□ 0.83
PCDHB3-201ENST00000231130 HIRIP3Q9BW71 556 aaPredicted RBP20.24■□□□□ 0.83
PCDHB3-201ENST00000231130 DHX57Q6P158 1386 aaKnown RBP20.23■□□□□ 0.83
PCDHB3-201ENST00000231130 DDX10Q13206 875 aaKnown RBP20.21■□□□□ 0.83
PCDHB3-201ENST00000231130 RBM19Q9Y4C8 960 aaKnown RBP20.21■□□□□ 0.83
PCDHB3-201ENST00000231130 RAPGEF2Q9Y4G8 1499 aa20.21■□□□□ 0.83
PCDHB3-201ENST00000231130 SMARCA4P51532 1647 aa20.19■□□□□ 0.82
PCDHB3-201ENST00000231130 TRIM52Q96A61 297 aa20.16■□□□□ 0.82
PCDHB3-201ENST00000231130 NEFLP07196 543 aa20.14■□□□□ 0.82
PCDHB3-201ENST00000231130 ATP1B4Q9UN42 357 aaPredicted RBP20.1■□□□□ 0.81
PCDHB3-201ENST00000231130 SIN3AQ96ST3 1273 aa20.07■□□□□ 0.8
PCDHB3-201ENST00000231130 SYNJ1O43426 1573 aa20.06■□□□□ 0.8
PCDHB3-201ENST00000231130 KIF21BO75037 1637 aa20.05■□□□□ 0.8
PCDHB3-201ENST00000231130 ANO8Q9HCE9 1232 aaPredicted RBP20.04■□□□□ 0.8
PCDHB3-201ENST00000231130 FAM50AQ14320 339 aaKnown RBP20.01■□□□□ 0.79
PCDHB3-201ENST00000231130 IRX6P78412 446 aaPredicted RBP19.97■□□□□ 0.79
PCDHB3-201ENST00000231130 MSH5O43196 834 aa19.97■□□□□ 0.79
PCDHB3-201ENST00000231130 DEKP35659 375 aaKnown RBP19.94■□□□□ 0.78
PCDHB3-201ENST00000231130 P3H3Q8IVL6 736 aa19.92■□□□□ 0.78
PCDHB3-201ENST00000231130 CCNB3Q8WWL7 1395 aa19.91■□□□□ 0.78
PCDHB3-201ENST00000231130 RAB3GAP2Q9H2M9 1393 aa19.9■□□□□ 0.78
PCDHB3-201ENST00000231130 CCDC136Q96JN2 1154 aa19.88■□□□□ 0.77
PCDHB3-201ENST00000231130 BAZ1BQ9UIG0 1483 aaKnown RBP19.88■□□□□ 0.77
PCDHB3-201ENST00000231130 ANP32CO43423 234 aa19.87■□□□□ 0.77
PCDHB3-201ENST00000231130 NBR1Q14596 966 aa19.86■□□□□ 0.77
PCDHB3-201ENST00000231130 ARAP1Q96P48 1450 aa19.84■□□□□ 0.77
PCDHB3-201ENST00000231130 CDK11AQ9UQ88 783 aaPredicted RBP19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms