RNA–Protein interactions for RNA: ENST00000227507.2

CCND1-201, Transcript of cyclin D1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCND1, Length 4,307 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCND1-201ENST00000227507 NISCHQ9Y2I1 1504 aa21.96■■□□□ 1.11
CCND1-201ENST00000227507 DCAF8L2P0C7V8 631 aa20.59■□□□□ 0.89
CCND1-201ENST00000227507 SHROOM4Q9ULL8 1493 aa19.38■□□□□ 0.69
CCND1-201ENST00000227507 SUPT5HO00267 1087 aaKnown RBP19.23■□□□□ 0.67
CCND1-201ENST00000227507 PCGF6Q9BYE7 350 aa18.97■□□□□ 0.63
CCND1-201ENST00000227507 HRCP23327 699 aa18.9■□□□□ 0.62
CCND1-201ENST00000227507 ABCC9O60706 1549 aa18.89■□□□□ 0.61
CCND1-201ENST00000227507 PPARGC1BQ86YN6 1023 aaKnown RBP18.83■□□□□ 0.6
CCND1-201ENST00000227507 PELP1Q8IZL8 1130 aaKnown RBP18.73■□□□□ 0.59
CCND1-201ENST00000227507 CCDC180Q9P1Z9 1646 aa18.65■□□□□ 0.58
CCND1-201ENST00000227507 MYT1Q01538 1121 aa18.36■□□□□ 0.53
CCND1-201ENST00000227507 CHIC1Q5VXU3 224 aa18.35■□□□□ 0.53
CCND1-201ENST00000227507 PABPN1Q86U42 306 aaKnown RBP eCLIP18.26■□□□□ 0.51
CCND1-201ENST00000227507 LOC105371045A0A1W2PR82 267 aa18.25■□□□□ 0.51
CCND1-201ENST00000227507 ZCCHC6Q5VYS8 1495 aaKnown RBP18.24■□□□□ 0.51
CCND1-201ENST00000227507 EHMT2Q96KQ7 1210 aa18.18■□□□□ 0.5
CCND1-201ENST00000227507 MYO15BQ96JP2 1530 aa18.11■□□□□ 0.49
CCND1-201ENST00000227507 TRIM26Q12899 539 aaPredicted RBP18.04■□□□□ 0.48
CCND1-201ENST00000227507 RB1CC1Q8TDY2 1594 aa17.96■□□□□ 0.46
CCND1-201ENST00000227507 FAM9AQ8IZU1 332 aaPredicted RBP17.94■□□□□ 0.46
CCND1-201ENST00000227507 SCRIBQ14160 1630 aa17.93■□□□□ 0.46
CCND1-201ENST00000227507 SCAF1Q9H7N4 1312 aaKnown RBP17.92■□□□□ 0.46
CCND1-201ENST00000227507 TRIM41Q8WV44 630 aa17.89■□□□□ 0.45
CCND1-201ENST00000227507 ZEB1P37275 1124 aaPredicted RBP17.89■□□□□ 0.45
CCND1-201ENST00000227507 NACADO15069 1562 aa17.88■□□□□ 0.45
CCND1-201ENST00000227507 DCAF1Q9Y4B6 1507 aa17.72■□□□□ 0.43
CCND1-201ENST00000227507 TTBK1Q5TCY1 1321 aaPredicted RBP17.67■□□□□ 0.42
CCND1-201ENST00000227507 CCER1Q8TC90 406 aaPredicted RBP17.64■□□□□ 0.41
CCND1-201ENST00000227507 CENPBP07199 599 aaPredicted RBP17.62■□□□□ 0.41
CCND1-201ENST00000227507 GTF3C3Q9Y5Q9 886 aa17.61■□□□□ 0.41
CCND1-201ENST00000227507 APLP2Q06481 763 aa17.58■□□□□ 0.4
CCND1-201ENST00000227507 YTHDC1Q96MU7 727 aaKnown RBP17.58■□□□□ 0.4
CCND1-201ENST00000227507 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.56■□□□□ 0.4
CCND1-201ENST00000227507 NEUROD1Q13562 356 aa17.55■□□□□ 0.4
CCND1-201ENST00000227507 ACIN1Q9UKV3 1341 aaKnown RBP17.55■□□□□ 0.4
CCND1-201ENST00000227507 UBTFP17480 764 aaKnown RBP17.49■□□□□ 0.39
CCND1-201ENST00000227507 RANGAP1P46060 587 aaPredicted RBP17.48■□□□□ 0.39
CCND1-201ENST00000227507 DIEXFQ68CQ4 756 aaKnown RBP17.43■□□□□ 0.38
CCND1-201ENST00000227507 PRKCSHP14314 528 aaPredicted RBP17.39■□□□□ 0.37
CCND1-201ENST00000227507 ATP1B4Q9UN42 357 aaPredicted RBP17.28■□□□□ 0.36
CCND1-201ENST00000227507 RSF1Q96T23 1441 aaPredicted RBP17.23■□□□□ 0.35
CCND1-201ENST00000227507 BAZ1AQ9NRL2 1556 aaPredicted RBP17.19■□□□□ 0.34
CCND1-201ENST00000227507 CECR2Q9BXF3 1484 aa17.16■□□□□ 0.34
CCND1-201ENST00000227507 BAZ1BQ9UIG0 1483 aaKnown RBP17.13■□□□□ 0.33
CCND1-201ENST00000227507 BCL11AQ9H165 835 aa17.07■□□□□ 0.32
CCND1-201ENST00000227507 ERICH6Q7L0X2 663 aa17.06■□□□□ 0.32
CCND1-201ENST00000227507 ZNF316A6NFI3 1004 aaPredicted RBP16.98■□□□□ 0.31
CCND1-201ENST00000227507 FBLN2P98095 1184 aa16.96■□□□□ 0.31
CCND1-201ENST00000227507 HNRNPUL2Q1KMD3 747 aaKnown RBP16.95■□□□□ 0.3
CCND1-201ENST00000227507 MROH2BQ7Z745 1585 aa16.95■□□□□ 0.3
CCND1-201ENST00000227507 MIER1Q8N108 512 aa16.92■□□□□ 0.3
CCND1-201ENST00000227507 SMARCA2P51531 1590 aa16.91■□□□□ 0.3
CCND1-201ENST00000227507 CSRNP3Q8WYN3 585 aa16.89■□□□□ 0.29
CCND1-201ENST00000227507 SLC24A1O60721 1099 aa16.79■□□□□ 0.28
CCND1-201ENST00000227507 BCANQ96GW7 911 aa16.76■□□□□ 0.27
CCND1-201ENST00000227507 ATAD2BQ9ULI0 1458 aa16.75■□□□□ 0.27
CCND1-201ENST00000227507 SMARCA4P51532 1647 aa16.75■□□□□ 0.27
CCND1-201ENST00000227507 ERCC6Q03468 1493 aa16.73■□□□□ 0.27
CCND1-201ENST00000227507 WRNQ14191 1432 aaPredicted RBP eCLIP16.72■□□□□ 0.27
CCND1-201ENST00000227507 WIZO95785 1651 aa16.71■□□□□ 0.26
CCND1-201ENST00000227507 CCDC88BA6NC98 1476 aa16.69■□□□□ 0.26
CCND1-201ENST00000227507 TOP2AP11388 1531 aaKnown RBP16.67■□□□□ 0.26
CCND1-201ENST00000227507 MYT1LQ9UL68 1186 aa16.63■□□□□ 0.25
CCND1-201ENST00000227507 ANP32EQ9BTT0 268 aa16.63■□□□□ 0.25
CCND1-201ENST00000227507 P3H3Q8IVL6 736 aa16.61■□□□□ 0.25
CCND1-201ENST00000227507 EIF4G1Q04637 1599 aaKnown RBP16.61■□□□□ 0.25
CCND1-201ENST00000227507 PDS5BQ9NTI5 1447 aa16.61■□□□□ 0.25
CCND1-201ENST00000227507 ITGAEP38570 1179 aa16.61■□□□□ 0.25
CCND1-201ENST00000227507 CHMP7Q8WUX9 453 aaPredicted RBP16.59■□□□□ 0.25
CCND1-201ENST00000227507 CADPSQ9ULU8 1353 aa16.57■□□□□ 0.24
CCND1-201ENST00000227507 SUPT16HQ9Y5B9 1047 aaKnown RBP16.56■□□□□ 0.24
CCND1-201ENST00000227507 EEA1Q15075 1411 aa16.54■□□□□ 0.24
CCND1-201ENST00000227507 KIF27Q86VH2 1401 aa16.52■□□□□ 0.24
CCND1-201ENST00000227507 NCAPD3P42695 1498 aa16.52■□□□□ 0.23
CCND1-201ENST00000227507 BICRAQ9NZM4 1560 aa16.49■□□□□ 0.23
CCND1-201ENST00000227507 NEFLP07196 543 aa16.49■□□□□ 0.23
CCND1-201ENST00000227507 ARID3CA6NKF2 412 aa16.46■□□□□ 0.22
CCND1-201ENST00000227507 TSHZ2Q9NRE2 1034 aa16.45■□□□□ 0.22
CCND1-201ENST00000227507 FAM50AQ14320 339 aaKnown RBP16.44■□□□□ 0.22
CCND1-201ENST00000227507 FKBP8Q14318 412 aa16.43■□□□□ 0.22
CCND1-201ENST00000227507 CDK11AQ9UQ88 783 aaPredicted RBP16.42■□□□□ 0.22
CCND1-201ENST00000227507 CEP162Q5TB80 1403 aa16.4■□□□□ 0.22
CCND1-201ENST00000227507 CUX2O14529 1486 aa16.39■□□□□ 0.21
CCND1-201ENST00000227507 CC2D2AQ9P2K1 1620 aa16.38■□□□□ 0.21
CCND1-201ENST00000227507 ABCC8Q09428 1581 aa16.38■□□□□ 0.21
CCND1-201ENST00000227507 CEP164Q9UPV0 1460 aa16.37■□□□□ 0.21
CCND1-201ENST00000227507 NPM1P06748 294 aaKnown RBP eCLIP16.36■□□□□ 0.21
CCND1-201ENST00000227507 GOLGA3Q08378 1498 aa16.35■□□□□ 0.21
CCND1-201ENST00000227507 SOGA1O94964 1423 aa16.34■□□□□ 0.21
CCND1-201ENST00000227507 FANCD2Q9BXW9 1451 aa16.34■□□□□ 0.21
CCND1-201ENST00000227507 CLIP1P30622 1438 aa16.3■□□□□ 0.2
CCND1-201ENST00000227507 UNC13AQ9UPW8 1703 aa16.3■□□□□ 0.2
CCND1-201ENST00000227507 CLSPNQ9HAW4 1339 aa16.29■□□□□ 0.2
CCND1-201ENST00000227507 HMGXB3Q12766 1538 aa16.28■□□□□ 0.2
CCND1-201ENST00000227507 CARMIL1Q5VZK9 1371 aa16.28■□□□□ 0.2
CCND1-201ENST00000227507 TDRD9Q8NDG6 1382 aaKnown RBP16.28■□□□□ 0.2
CCND1-201ENST00000227507 KCNH8Q96L42 1107 aa16.27■□□□□ 0.2
CCND1-201ENST00000227507 TRIM52Q96A61 297 aa16.25■□□□□ 0.19
CCND1-201ENST00000227507 DDX10Q13206 875 aaKnown RBP16.23■□□□□ 0.19
CCND1-201ENST00000227507 ZNF777Q9ULD5 760 aaPredicted RBP16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms