RNA–Protein interactions for RNA: ENST00000220478.7

SCG3-201, Transcript of secretogranin III, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCG3, Length 3,315 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCG3-201ENST00000220478 NISCHQ9Y2I1 1504 aa15.05■□□□□ -0
SCG3-201ENST00000220478 CHIC1Q5VXU3 224 aa14.9□□□□□ -0.02
SCG3-201ENST00000220478 AEBP2Q6ZN18 517 aaPredicted RBP14.89□□□□□ -0.03
SCG3-201ENST00000220478 SLC24A1O60721 1099 aa14.58□□□□□ -0.07
SCG3-201ENST00000220478 EHMT2Q96KQ7 1210 aa13.68□□□□□ -0.22
SCG3-201ENST00000220478 HRCP23327 699 aa13.59□□□□□ -0.23
SCG3-201ENST00000220478 PHF23Q9BUL5 403 aaPredicted RBP13.5□□□□□ -0.25
SCG3-201ENST00000220478 MYO15BQ96JP2 1530 aa13.42□□□□□ -0.26
SCG3-201ENST00000220478 PPARGC1BQ86YN6 1023 aaKnown RBP13.33□□□□□ -0.28
SCG3-201ENST00000220478 PLPPR3Q6T4P5 718 aa13.29□□□□□ -0.28
SCG3-201ENST00000220478 RTN4Q9NQC3 1192 aaKnown RBP13.19□□□□□ -0.3
SCG3-201ENST00000220478 SHROOM4Q9ULL8 1493 aa13.17□□□□□ -0.3
SCG3-201ENST00000220478 DAXXQ9UER7 740 aaPredicted RBP13.16□□□□□ -0.3
SCG3-201ENST00000220478 PCGF6Q9BYE7 350 aa13.15□□□□□ -0.3
SCG3-201ENST00000220478 SUPT5HO00267 1087 aaKnown RBP13.06□□□□□ -0.32
SCG3-201ENST00000220478 PELP1Q8IZL8 1130 aaKnown RBP13.05□□□□□ -0.32
SCG3-201ENST00000220478 DCAF1Q9Y4B6 1507 aa13.03□□□□□ -0.32
SCG3-201ENST00000220478 SCAF1Q9H7N4 1312 aaKnown RBP12.97□□□□□ -0.33
SCG3-201ENST00000220478 CCDC180Q9P1Z9 1646 aa12.96□□□□□ -0.34
SCG3-201ENST00000220478 NCBP3Q53F19 620 aaKnown RBP12.95□□□□□ -0.34
SCG3-201ENST00000220478 ZCCHC6Q5VYS8 1495 aaKnown RBP12.88□□□□□ -0.35
SCG3-201ENST00000220478 AMER1Q5JTC6 1135 aaPredicted RBP12.8□□□□□ -0.36
SCG3-201ENST00000220478 LOC105371045A0A1W2PR82 267 aa12.74□□□□□ -0.37
SCG3-201ENST00000220478 TRIM26Q12899 539 aaPredicted RBP12.73□□□□□ -0.37
SCG3-201ENST00000220478 KCNA4P22459 653 aa12.7□□□□□ -0.38
SCG3-201ENST00000220478 PRKCSHP14314 528 aaPredicted RBP12.67□□□□□ -0.38
SCG3-201ENST00000220478 CSRNP3Q8WYN3 585 aa12.65□□□□□ -0.38
SCG3-201ENST00000220478 ZEB1P37275 1124 aaPredicted RBP12.55□□□□□ -0.4
SCG3-201ENST00000220478 NEUROD1Q13562 356 aa12.53□□□□□ -0.4
SCG3-201ENST00000220478 ACIN1Q9UKV3 1341 aaKnown RBP12.51□□□□□ -0.41
SCG3-201ENST00000220478 MYT1Q01538 1121 aa12.49□□□□□ -0.41
SCG3-201ENST00000220478 TTBK1Q5TCY1 1321 aaPredicted RBP12.49□□□□□ -0.41
SCG3-201ENST00000220478 APLP2Q06481 763 aa12.46□□□□□ -0.41
SCG3-201ENST00000220478 ARXQ96QS3 562 aa12.41□□□□□ -0.42
SCG3-201ENST00000220478 TIMELESSQ9UNS1 1208 aa12.39□□□□□ -0.43
SCG3-201ENST00000220478 GTF3C3Q9Y5Q9 886 aa12.38□□□□□ -0.43
SCG3-201ENST00000220478 ERICH6Q7L0X2 663 aa12.34□□□□□ -0.43
SCG3-201ENST00000220478 ABCC9O60706 1549 aa12.29□□□□□ -0.44
SCG3-201ENST00000220478 TULP1O00294 542 aaPredicted RBP12.22□□□□□ -0.45
SCG3-201ENST00000220478 TAOK2Q9UL54 1235 aa12.19□□□□□ -0.46
SCG3-201ENST00000220478 RB1CC1Q8TDY2 1594 aa12.19□□□□□ -0.46
SCG3-201ENST00000220478 DIEXFQ68CQ4 756 aaKnown RBP12.18□□□□□ -0.46
SCG3-201ENST00000220478 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.18□□□□□ -0.46
SCG3-201ENST00000220478 TRIM41Q8WV44 630 aa12.16□□□□□ -0.46
SCG3-201ENST00000220478 CENPBP07199 599 aaPredicted RBP12.13□□□□□ -0.47
SCG3-201ENST00000220478 RSF1Q96T23 1441 aaPredicted RBP12.13□□□□□ -0.47
SCG3-201ENST00000220478 RANGAP1P46060 587 aaPredicted RBP12.12□□□□□ -0.47
SCG3-201ENST00000220478 ADRA2BP18089 450 aa12.06□□□□□ -0.48
SCG3-201ENST00000220478 HOMEZQ8IX15 550 aa12.04□□□□□ -0.48
SCG3-201ENST00000220478 FAM9AQ8IZU1 332 aaPredicted RBP12.04□□□□□ -0.48
SCG3-201ENST00000220478 DCAF8L2P0C7V8 631 aa12.03□□□□□ -0.48
SCG3-201ENST00000220478 CCER1Q8TC90 406 aaPredicted RBP12.03□□□□□ -0.48
SCG3-201ENST00000220478 TPRNQ4KMQ1 711 aa12.02□□□□□ -0.49
SCG3-201ENST00000220478 SENP3Q9H4L4 574 aaPredicted RBP12.02□□□□□ -0.49
SCG3-201ENST00000220478 BCANQ96GW7 911 aa12.01□□□□□ -0.49
SCG3-201ENST00000220478 EIF4G1Q04637 1599 aaKnown RBP12□□□□□ -0.49
SCG3-201ENST00000220478 SLC4A1APQ9BWU0 796 aaKnown RBP11.97□□□□□ -0.49
SCG3-201ENST00000220478 WRNQ14191 1432 aaPredicted RBP eCLIP11.96□□□□□ -0.5
SCG3-201ENST00000220478 MIER1Q8N108 512 aa11.94□□□□□ -0.5
SCG3-201ENST00000220478 ZNF316A6NFI3 1004 aaPredicted RBP11.94□□□□□ -0.5
SCG3-201ENST00000220478 KLHL34Q8N239 644 aa11.93□□□□□ -0.5
SCG3-201ENST00000220478 YTHDC1Q96MU7 727 aaKnown RBP11.91□□□□□ -0.5
SCG3-201ENST00000220478 BCL11AQ9H165 835 aa11.89□□□□□ -0.51
SCG3-201ENST00000220478 PODXL2Q9NZ53 605 aa11.88□□□□□ -0.51
SCG3-201ENST00000220478 SCRIBQ14160 1630 aa11.88□□□□□ -0.51
SCG3-201ENST00000220478 TSHZ2Q9NRE2 1034 aa11.83□□□□□ -0.52
SCG3-201ENST00000220478 SUPT16HQ9Y5B9 1047 aaKnown RBP11.83□□□□□ -0.52
SCG3-201ENST00000220478 PLCB2Q00722 1185 aa11.82□□□□□ -0.52
SCG3-201ENST00000220478 ANP32EQ9BTT0 268 aa11.82□□□□□ -0.52
SCG3-201ENST00000220478 WIZO95785 1651 aa11.81□□□□□ -0.52
SCG3-201ENST00000220478 MROH2BQ7Z745 1585 aa11.79□□□□□ -0.52
SCG3-201ENST00000220478 EIF5BO60841 1220 aaKnown RBP11.79□□□□□ -0.52
SCG3-201ENST00000220478 CEP162Q5TB80 1403 aa11.79□□□□□ -0.52
SCG3-201ENST00000220478 PPP6R1Q9UPN7 881 aa11.78□□□□□ -0.52
SCG3-201ENST00000220478 CECR2Q9BXF3 1484 aa11.77□□□□□ -0.53
SCG3-201ENST00000220478 HAP1P54257 671 aaPredicted RBP11.75□□□□□ -0.53
SCG3-201ENST00000220478 ABCC8Q09428 1581 aa11.74□□□□□ -0.53
SCG3-201ENST00000220478 NACADO15069 1562 aa11.73□□□□□ -0.53
SCG3-201ENST00000220478 CCDC88BA6NC98 1476 aa11.72□□□□□ -0.53
SCG3-201ENST00000220478 BAZ1AQ9NRL2 1556 aaPredicted RBP11.72□□□□□ -0.53
SCG3-201ENST00000220478 TNIKQ9UKE5 1360 aa11.68□□□□□ -0.54
SCG3-201ENST00000220478 CLSPNQ9HAW4 1339 aa11.68□□□□□ -0.54
SCG3-201ENST00000220478 SOGA1O94964 1423 aa11.65□□□□□ -0.54
SCG3-201ENST00000220478 RUSC2Q8N2Y8 1516 aa11.64□□□□□ -0.55
SCG3-201ENST00000220478 NPM2Q86SE8 214 aaKnown RBP11.59□□□□□ -0.55
SCG3-201ENST00000220478 ZBTB22O15209 634 aa11.55□□□□□ -0.56
SCG3-201ENST00000220478 SMARCA2P51531 1590 aa11.54□□□□□ -0.56
SCG3-201ENST00000220478 KCNH8Q96L42 1107 aa11.53□□□□□ -0.56
SCG3-201ENST00000220478 DHX57Q6P158 1386 aaKnown RBP11.53□□□□□ -0.56
SCG3-201ENST00000220478 MSH5O43196 834 aa11.52□□□□□ -0.56
SCG3-201ENST00000220478 HNRNPUL2Q1KMD3 747 aaKnown RBP11.52□□□□□ -0.57
SCG3-201ENST00000220478 TOP2AP11388 1531 aaKnown RBP11.51□□□□□ -0.57
SCG3-201ENST00000220478 TMEM132AQ24JP5 1023 aa11.51□□□□□ -0.57
SCG3-201ENST00000220478 GOLGA3Q08378 1498 aa11.51□□□□□ -0.57
SCG3-201ENST00000220478 KIF21BO75037 1637 aa11.5□□□□□ -0.57
SCG3-201ENST00000220478 C14orf37Q86TY3 774 aa11.48□□□□□ -0.57
SCG3-201ENST00000220478 EEA1Q15075 1411 aa11.48□□□□□ -0.57
SCG3-201ENST00000220478 CLIP1P30622 1438 aa11.48□□□□□ -0.57
SCG3-201ENST00000220478 RBM19Q9Y4C8 960 aaKnown RBP11.48□□□□□ -0.57
SCG3-201ENST00000220478 VPS8Q8N3P4 1428 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms