RNA–Protein interactions for RNA: ENST00000198939.6

CHERP-201, Transcript of calcium homeostasis endoplasmic reticulum protein, humanhuman

TSL 5 BASIC

Gene CHERP, Length 4,084 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHERP-201ENST00000198939 NISCHQ9Y2I1 1504 aa21.91■■□□□ 1.1
CHERP-201ENST00000198939 CCDC180Q9P1Z9 1646 aa19.34■□□□□ 0.69
CHERP-201ENST00000198939 ABCC9O60706 1549 aa18.56■□□□□ 0.56
CHERP-201ENST00000198939 ZCCHC6Q5VYS8 1495 aaKnown RBP18.3■□□□□ 0.52
CHERP-201ENST00000198939 DCAF8L2P0C7V8 631 aa18.28■□□□□ 0.52
CHERP-201ENST00000198939 DCAF1Q9Y4B6 1507 aa18.2■□□□□ 0.5
CHERP-201ENST00000198939 MYO15BQ96JP2 1530 aa18.18■□□□□ 0.5
CHERP-201ENST00000198939 NACADO15069 1562 aa18.16■□□□□ 0.5
CHERP-201ENST00000198939 RB1CC1Q8TDY2 1594 aa18.09■□□□□ 0.49
CHERP-201ENST00000198939 SCRIBQ14160 1630 aa17.61■□□□□ 0.41
CHERP-201ENST00000198939 SHROOM4Q9ULL8 1493 aa17.49■□□□□ 0.39
CHERP-201ENST00000198939 UNC13AQ9UPW8 1703 aa17.45■□□□□ 0.38
CHERP-201ENST00000198939 PABPN1Q86U42 306 aaKnown RBP eCLIP17.43■□□□□ 0.38
CHERP-201ENST00000198939 BICRAQ9NZM4 1560 aa17.36■□□□□ 0.37
CHERP-201ENST00000198939 HRCP23327 699 aa17.07■□□□□ 0.32
CHERP-201ENST00000198939 BAZ1AQ9NRL2 1556 aaPredicted RBP17.01■□□□□ 0.31
CHERP-201ENST00000198939 CECR2Q9BXF3 1484 aa16.96■□□□□ 0.3
CHERP-201ENST00000198939 EIF4G1Q04637 1599 aaKnown RBP16.96■□□□□ 0.3
CHERP-201ENST00000198939 SMARCA4P51532 1647 aa16.9■□□□□ 0.3
CHERP-201ENST00000198939 MROH2BQ7Z745 1585 aa16.83■□□□□ 0.28
CHERP-201ENST00000198939 SMARCA2P51531 1590 aa16.82■□□□□ 0.28
CHERP-201ENST00000198939 PELP1Q8IZL8 1130 aaKnown RBP16.82■□□□□ 0.28
CHERP-201ENST00000198939 RSF1Q96T23 1441 aaPredicted RBP16.82■□□□□ 0.28
CHERP-201ENST00000198939 PCGF6Q9BYE7 350 aa16.8■□□□□ 0.28
CHERP-201ENST00000198939 CC2D2AQ9P2K1 1620 aa16.79■□□□□ 0.28
CHERP-201ENST00000198939 SUPT5HO00267 1087 aaKnown RBP16.78■□□□□ 0.28
CHERP-201ENST00000198939 ATAD2BQ9ULI0 1458 aa16.76■□□□□ 0.27
CHERP-201ENST00000198939 PEG3Q9GZU2 1588 aa16.75■□□□□ 0.27
CHERP-201ENST00000198939 NCAPD3P42695 1498 aa16.74■□□□□ 0.27
CHERP-201ENST00000198939 PPARGC1BQ86YN6 1023 aaKnown RBP16.72■□□□□ 0.27
CHERP-201ENST00000198939 BAZ1BQ9UIG0 1483 aaKnown RBP16.68■□□□□ 0.26
CHERP-201ENST00000198939 HMGXB3Q12766 1538 aa16.67■□□□□ 0.26
CHERP-201ENST00000198939 DNAJC5BQ9UF47 199 aa16.64■□□□□ 0.25
CHERP-201ENST00000198939 WIZO95785 1651 aa16.64■□□□□ 0.25
CHERP-201ENST00000198939 TOP2AP11388 1531 aaKnown RBP16.58■□□□□ 0.24
CHERP-201ENST00000198939 CCDC88BA6NC98 1476 aa16.37■□□□□ 0.21
CHERP-201ENST00000198939 CHIC1Q5VXU3 224 aa16.36■□□□□ 0.21
CHERP-201ENST00000198939 CADPSQ9ULU8 1353 aa16.29■□□□□ 0.2
CHERP-201ENST00000198939 MYT1Q01538 1121 aa16.25■□□□□ 0.19
CHERP-201ENST00000198939 LAMC3Q9Y6N6 1575 aa16.24■□□□□ 0.19
CHERP-201ENST00000198939 CFTRP13569 1480 aa16.22■□□□□ 0.19
CHERP-201ENST00000198939 PDS5BQ9NTI5 1447 aa16.2■□□□□ 0.18
CHERP-201ENST00000198939 SCAF1Q9H7N4 1312 aaKnown RBP16.18■□□□□ 0.18
CHERP-201ENST00000198939 TRIM26Q12899 539 aaPredicted RBP16.17■□□□□ 0.18
CHERP-201ENST00000198939 ZEB1P37275 1124 aaPredicted RBP16.16■□□□□ 0.18
CHERP-201ENST00000198939 NESP48681 1621 aa16.1■□□□□ 0.17
CHERP-201ENST00000198939 ERCC6Q03468 1493 aa16.08■□□□□ 0.17
CHERP-201ENST00000198939 FANCD2Q9BXW9 1451 aa16.07■□□□□ 0.16
CHERP-201ENST00000198939 LOC105371045A0A1W2PR82 267 aa16.06■□□□□ 0.16
CHERP-201ENST00000198939 PRDM2Q13029 1718 aa16.05■□□□□ 0.16
CHERP-201ENST00000198939 CEP164Q9UPV0 1460 aa16.04■□□□□ 0.16
CHERP-201ENST00000198939 ABCC8Q09428 1581 aa15.99■□□□□ 0.15
CHERP-201ENST00000198939 MRC2Q9UBG0 1479 aa15.94■□□□□ 0.14
CHERP-201ENST00000198939 WRNQ14191 1432 aaPredicted RBP eCLIP15.91■□□□□ 0.14
CHERP-201ENST00000198939 KIF21AQ7Z4S6 1674 aa15.9■□□□□ 0.14
CHERP-201ENST00000198939 TRIM41Q8WV44 630 aa15.86■□□□□ 0.13
CHERP-201ENST00000198939 DNMBPQ6XZF7 1577 aa15.85■□□□□ 0.13
CHERP-201ENST00000198939 ACIN1Q9UKV3 1341 aaKnown RBP15.84■□□□□ 0.13
CHERP-201ENST00000198939 WDR62O43379 1518 aa15.82■□□□□ 0.12
CHERP-201ENST00000198939 TOPBP1Q92547 1522 aa15.82■□□□□ 0.12
CHERP-201ENST00000198939 URB2Q14146 1524 aaKnown RBP15.81■□□□□ 0.12
CHERP-201ENST00000198939 CENPBP07199 599 aaPredicted RBP15.81■□□□□ 0.12
CHERP-201ENST00000198939 THOC2Q8NI27 1593 aaKnown RBP15.79■□□□□ 0.12
CHERP-201ENST00000198939 CUX2O14529 1486 aa15.78■□□□□ 0.12
CHERP-201ENST00000198939 CUX1P39880 1505 aa15.78■□□□□ 0.12
CHERP-201ENST00000198939 TOP2BQ02880 1626 aa15.78■□□□□ 0.12
CHERP-201ENST00000198939 GTF3C3Q9Y5Q9 886 aa15.77■□□□□ 0.11
CHERP-201ENST00000198939 NEUROD1Q13562 356 aa15.75■□□□□ 0.11
CHERP-201ENST00000198939 BIVM-ERCC5R4GMW8 1640 aa15.75■□□□□ 0.11
CHERP-201ENST00000198939 SOGA1O94964 1423 aa15.72■□□□□ 0.11
CHERP-201ENST00000198939 FGD5Q6ZNL6 1462 aa15.72■□□□□ 0.11
CHERP-201ENST00000198939 SYNJ1O43426 1573 aa15.72■□□□□ 0.11
CHERP-201ENST00000198939 IFT140Q96RY7 1462 aa15.72■□□□□ 0.11
CHERP-201ENST00000198939 POLA1P09884 1462 aaPredicted RBP15.7■□□□□ 0.1
CHERP-201ENST00000198939 ABCA10Q8WWZ4 1543 aa15.61■□□□□ 0.09
CHERP-201ENST00000198939 WDR97A6NE52 1622 aa15.61■□□□□ 0.09
CHERP-201ENST00000198939 KIF27Q86VH2 1401 aa15.6■□□□□ 0.09
CHERP-201ENST00000198939 EHMT2Q96KQ7 1210 aa15.6■□□□□ 0.09
CHERP-201ENST00000198939 RAD54L2Q9Y4B4 1467 aa15.6■□□□□ 0.09
CHERP-201ENST00000198939 EEA1Q15075 1411 aa15.59■□□□□ 0.09
CHERP-201ENST00000198939 CCER1Q8TC90 406 aaPredicted RBP15.58■□□□□ 0.08
CHERP-201ENST00000198939 DIEXFQ68CQ4 756 aaKnown RBP15.57■□□□□ 0.08
CHERP-201ENST00000198939 TARBP1Q13395 1621 aaKnown RBP15.56■□□□□ 0.08
CHERP-201ENST00000198939 FAM9AQ8IZU1 332 aaPredicted RBP15.56■□□□□ 0.08
CHERP-201ENST00000198939 TDRD9Q8NDG6 1382 aaKnown RBP15.54■□□□□ 0.08
CHERP-201ENST00000198939 GAPVD1Q14C86 1478 aa15.52■□□□□ 0.08
CHERP-201ENST00000198939 GRIN2BQ13224 1484 aa15.5■□□□□ 0.07
CHERP-201ENST00000198939 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.5■□□□□ 0.07
CHERP-201ENST00000198939 YTHDC1Q96MU7 727 aaKnown RBP15.48■□□□□ 0.07
CHERP-201ENST00000198939 AQRO60306 1485 aaKnown RBP eCLIP15.48■□□□□ 0.073e-7■■■■□ 22.2
CHERP-201ENST00000198939 CSRNP3Q8WYN3 585 aa15.48■□□□□ 0.07
CHERP-201ENST00000198939 ZNF608Q9ULD9 1512 aaPredicted RBP15.47■□□□□ 0.07
CHERP-201ENST00000198939 ERICH3Q5RHP9 1530 aa15.45■□□□□ 0.06
CHERP-201ENST00000198939 ABCA5Q8WWZ7 1642 aa15.44■□□□□ 0.06
CHERP-201ENST00000198939 EIF4G3O43432 1585 aaKnown RBP15.44■□□□□ 0.06
CHERP-201ENST00000198939 IGF1RP08069 1367 aa15.43■□□□□ 0.06
CHERP-201ENST00000198939 MAGI1Q96QZ7 1491 aaPredicted RBP15.42■□□□□ 0.06
CHERP-201ENST00000198939 CHMP7Q8WUX9 453 aaPredicted RBP15.4■□□□□ 0.06
CHERP-201ENST00000198939 FHAD1B1AJZ9 1412 aa15.39■□□□□ 0.05
CHERP-201ENST00000198939 CARMIL1Q5VZK9 1371 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms