RNA–Protein interactions for RNA: ENSMUST00000041639.6

Syne1-201, Transcript of Nesprin-1, mousemouse

TSL 1 (best) BASIC

Gene Syne1, Length 6,990 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Syne1-201ENSMUST00000041639 Rhox8Q6VSS7 320 aa17.44■□□□□ 0.38
Syne1-201ENSMUST00000041639 Ehmt2Q9Z148 1263 aaKnown RBP15.95■□□□□ 0.14
Syne1-201ENSMUST00000041639 Rpgrip1Q9EPQ2 1331 aa15.94■□□□□ 0.14
Syne1-201ENSMUST00000041639 Ccdc136Q3TVA9 1136 aa15.48■□□□□ 0.07
Syne1-201ENSMUST00000041639 Wdr66E9Q743 1299 aa15.42■□□□□ 0.06
Syne1-201ENSMUST00000041639 Las1lA2BE28 776 aaKnown RBP15.4■□□□□ 0.06
Syne1-201ENSMUST00000041639 Cngb1E1AZ71 1325 aa15.4■□□□□ 0.06
Syne1-201ENSMUST00000041639 Zeb1Q64318 1117 aa15.31■□□□□ 0.04
Syne1-201ENSMUST00000041639 Esf1Q3V1V3 845 aaKnown RBP15.29■□□□□ 0.04
Syne1-201ENSMUST00000041639 Gab3Q8BSM5 595 aa15.24■□□□□ 0.03
Syne1-201ENSMUST00000041639 Ube2uB1AUC4 352 aa15.19■□□□□ 0.02
Syne1-201ENSMUST00000041639 Pelp1Q9DBD5 1123 aaKnown RBP15.04■□□□□ -0
Syne1-201ENSMUST00000041639 Trim41Q5NCC3 630 aa15.03■□□□□ -0
Syne1-201ENSMUST00000041639 Npm2Q80W85 207 aa15□□□□□ -0.01
Syne1-201ENSMUST00000041639 Myt1lP97500 1187 aa14.97□□□□□ -0.01
Syne1-201ENSMUST00000041639 Acin1Q9JIX8 1338 aaKnown RBP14.79□□□□□ -0.04
Syne1-201ENSMUST00000041639 NischQ80TM9 1593 aa14.78□□□□□ -0.04
Syne1-201ENSMUST00000041639 UbtfP25976 765 aaKnown RBP14.73□□□□□ -0.05
Syne1-201ENSMUST00000041639 CenpbP27790 599 aa14.71□□□□□ -0.05
Syne1-201ENSMUST00000041639 NefmP08553 848 aa14.65□□□□□ -0.06
Syne1-201ENSMUST00000041639 Amer1Q7TS75 1132 aa14.65□□□□□ -0.06
Syne1-201ENSMUST00000041639 Slc24a1Q91WD8 1130 aa14.62□□□□□ -0.07
Syne1-201ENSMUST00000041639 Stra8P70278 393 aa14.5□□□□□ -0.09
Syne1-201ENSMUST00000041639 Pcgf6Q99NA9 353 aa14.41□□□□□ -0.1
Syne1-201ENSMUST00000041639 Cdk11bP24788 784 aaKnown RBP14.4□□□□□ -0.11
Syne1-201ENSMUST00000041639 Ccdc180J3QNE4 1664 aa14.36□□□□□ -0.11
Syne1-201ENSMUST00000041639 Il27Q8K3I6 234 aa14.35□□□□□ -0.11
Syne1-201ENSMUST00000041639 HrcG5E8J6 738 aa14.33□□□□□ -0.12
Syne1-201ENSMUST00000041639 Ttbk1Q6PCN3 1308 aa14.31□□□□□ -0.12
Syne1-201ENSMUST00000041639 Ppargc1bQ8VHJ7 1014 aa14.3□□□□□ -0.12
Syne1-201ENSMUST00000041639 Nop58Q6DFW4 536 aaKnown RBP14.24□□□□□ -0.13
Syne1-201ENSMUST00000041639 Fam50aQ9WV03 339 aaKnown RBP14.23□□□□□ -0.13
Syne1-201ENSMUST00000041639 Ap3b1Q9Z1T1 1105 aa14.23□□□□□ -0.13
Syne1-201ENSMUST00000041639 Neurod1Q60867 357 aa14.22□□□□□ -0.13
Syne1-201ENSMUST00000041639 NclP09405 707 aaKnown RBP14.19□□□□□ -0.14
Syne1-201ENSMUST00000041639 NrdcQ8BHG1 1161 aa14.18□□□□□ -0.14
Syne1-201ENSMUST00000041639 Supt5hO55201 1082 aaKnown RBP14.16□□□□□ -0.14
Syne1-201ENSMUST00000041639 Eif5bQ05D44 1216 aaKnown RBP14.16□□□□□ -0.14
Syne1-201ENSMUST00000041639 4933416C03RikQ3V063 378 aa14.13□□□□□ -0.15
Syne1-201ENSMUST00000041639 Rtl1Q7M732 1744 aa14.12□□□□□ -0.15
Syne1-201ENSMUST00000041639 Tnnt3Q9QZ47 272 aa14.11□□□□□ -0.15
Syne1-201ENSMUST00000041639 Anp32bQ9EST5 272 aaKnown RBP14.08□□□□□ -0.16
Syne1-201ENSMUST00000041639 NeflP08551 543 aa14.05□□□□□ -0.16
Syne1-201ENSMUST00000041639 Zcchc6Q5BLK4 1491 aaKnown RBP14.03□□□□□ -0.16
Syne1-201ENSMUST00000041639 TonslQ6NZL6 1363 aa14.02□□□□□ -0.16
Syne1-201ENSMUST00000041639 Myt1Q8CFC2 1127 aa14.02□□□□□ -0.17
Syne1-201ENSMUST00000041639 Os9Q8K2C7 672 aa14□□□□□ -0.17
Syne1-201ENSMUST00000041639 4930567H17RikQ3V0K5 233 aa13.98□□□□□ -0.17
Syne1-201ENSMUST00000041639 Mier1Q5UAK0 511 aa13.97□□□□□ -0.17
Syne1-201ENSMUST00000041639 Abcc9P70170 1546 aa13.86□□□□□ -0.19
Syne1-201ENSMUST00000041639 Gm35339A0A140LHH9 1649 aa13.83□□□□□ -0.2
Syne1-201ENSMUST00000041639 Zbtb7cQ8VCZ7 619 aa13.8□□□□□ -0.2
Syne1-201ENSMUST00000041639 Plekhg3Q4VAC9 1341 aa13.79□□□□□ -0.2
Syne1-201ENSMUST00000041639 Lmod2Q3UHZ5 550 aa13.79□□□□□ -0.2
Syne1-201ENSMUST00000041639 ClspnQ80YR7 1315 aa13.73□□□□□ -0.21
Syne1-201ENSMUST00000041639 Rtl5Q5DTT4 599 aa13.73□□□□□ -0.21
Syne1-201ENSMUST00000041639 Mapk8ip2Q9ERE9 830 aa13.73□□□□□ -0.21
Syne1-201ENSMUST00000041639 Zbtb4Q5F293 982 aa13.68□□□□□ -0.22
Syne1-201ENSMUST00000041639 Hnrnpul2Q00PI9 745 aaKnown RBP13.67□□□□□ -0.22
Syne1-201ENSMUST00000041639 Gm38655A0A286YDK6 273 aa13.66□□□□□ -0.22
Syne1-201ENSMUST00000041639 Anp32aO35381 247 aa13.64□□□□□ -0.23
Syne1-201ENSMUST00000041639 Eid3Q3V124 375 aa13.64□□□□□ -0.23
Syne1-201ENSMUST00000041639 DaxxO35613 739 aa13.63□□□□□ -0.23
Syne1-201ENSMUST00000041639 Npm1Q61937 292 aaKnown RBP13.62□□□□□ -0.23
Syne1-201ENSMUST00000041639 Chic1Q8CBW7 227 aa13.61□□□□□ -0.23
Syne1-201ENSMUST00000041639 Sall2Q9QX96 1004 aa13.58□□□□□ -0.24
Syne1-201ENSMUST00000041639 Prdm10Q3UTQ7 1184 aa13.55□□□□□ -0.24
Syne1-201ENSMUST00000041639 Csrnp3P59055 597 aa13.54□□□□□ -0.24
Syne1-201ENSMUST00000041639 DiexfQ8BTT6 772 aaKnown RBP13.53□□□□□ -0.24
Syne1-201ENSMUST00000041639 Ifnlr1Q8CGK5 535 aa13.53□□□□□ -0.24
Syne1-201ENSMUST00000041639 Erich6D3Z6S9 713 aa13.52□□□□□ -0.25
Syne1-201ENSMUST00000041639 Polr3glQ8R0C0 218 aa13.5□□□□□ -0.25
Syne1-201ENSMUST00000041639 Nlrp6Q91WS2 869 aa13.5□□□□□ -0.25
Syne1-201ENSMUST00000041639 ArxO35085 564 aa13.49□□□□□ -0.25
Syne1-201ENSMUST00000041639 Gm13697A2AK42 830 aa13.47□□□□□ -0.25
Syne1-201ENSMUST00000041639 Anks4bQ8K3X6 423 aa13.47□□□□□ -0.25
Syne1-201ENSMUST00000041639 Atp1b4Q99ME6 356 aa13.46□□□□□ -0.26
Syne1-201ENSMUST00000041639 Clip1Q922J3 1391 aa13.43□□□□□ -0.26
Syne1-201ENSMUST00000041639 Fkbp15Q6P9Q6 1216 aaKnown RBP13.39□□□□□ -0.27
Syne1-201ENSMUST00000041639 Ppp4r2Q0VGB7 417 aa13.37□□□□□ -0.27
Syne1-201ENSMUST00000041639 Calr4Q3TQS0 420 aa13.36□□□□□ -0.27
Syne1-201ENSMUST00000041639 Aplp2Q06335 707 aa13.34□□□□□ -0.27
Syne1-201ENSMUST00000041639 Dcaf1Q80TR8 1506 aa13.34□□□□□ -0.27
Syne1-201ENSMUST00000041639 Rangap1P46061 589 aaKnown RBP13.33□□□□□ -0.28
Syne1-201ENSMUST00000041639 Cep164Q5DU05 1446 aa13.31□□□□□ -0.28
Syne1-201ENSMUST00000041639 Abcc8B2RUS7 1588 aa13.29□□□□□ -0.28
Syne1-201ENSMUST00000041639 Rad21Q61550 635 aaKnown RBP13.29□□□□□ -0.28
Syne1-201ENSMUST00000041639 Gm13695A2AK44 830 aa13.27□□□□□ -0.28
Syne1-201ENSMUST00000041639 Brd4Q9ESU6 1400 aaKnown RBP13.27□□□□□ -0.28
Syne1-201ENSMUST00000041639 Chic2Q9D9G3 165 aa13.27□□□□□ -0.28
Syne1-201ENSMUST00000041639 Ccer2J3QPU5 274 aa13.26□□□□□ -0.29
Syne1-201ENSMUST00000041639 Mrs2Q5NCE8 434 aa13.25□□□□□ -0.29
Syne1-201ENSMUST00000041639 Wdr43Q6ZQL4 677 aaKnown RBP13.22□□□□□ -0.29
Syne1-201ENSMUST00000041639 Hdac5Q9Z2V6 1113 aa13.22□□□□□ -0.29
Syne1-201ENSMUST00000041639 Plppr3Q7TPB0 716 aa13.18□□□□□ -0.3
Syne1-201ENSMUST00000041639 Upf2A2AT37 1269 aaKnown RBP13.17□□□□□ -0.3
Syne1-201ENSMUST00000041639 BlmO88700 1416 aa13.16□□□□□ -0.3
Syne1-201ENSMUST00000041639 Aebp2Q9Z248 504 aaKnown RBP13.11□□□□□ -0.31
Syne1-201ENSMUST00000041639 Ubl4bQ9CQ84 188 aa13.11□□□□□ -0.31
Syne1-201ENSMUST00000041639 Vsig10D3YX43 558 aa13.1□□□□□ -0.31
Retrieved 100 of 22,080 RNA–protein pairs in 30.3 ms