RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 FAM162AQ96A26 154 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 SMOQ99835 787 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 C20orf27Q9GZN8 174 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 AGO3Q9H9G7 860 aaKnown RBP10.32□□□□□ -0.76
LIG1-220ENST00000601091 MTMR10Q9NXD2 777 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 ACTR3BQ9P1U1 418 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 CACNG4Q9UBN1 327 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 ADAMTS6Q9UKP5 1117 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 MED16Q9Y2X0 877 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 PCDHGB5Q9Y5G0 923 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 COPG1Q9Y678 874 aaKnown RBP10.32□□□□□ -0.76
LIG1-220ENST00000601091 A0A0J9YYE9 177 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 ZBBXA8MT70 800 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 CBX4O00257 560 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 CD3EAPO15446 510 aaKnown RBP10.32□□□□□ -0.76
LIG1-220ENST00000601091 BEST1O76090 585 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 SNAI1O95863 264 aaPredicted RBP10.32□□□□□ -0.76
LIG1-220ENST00000601091 PIRTP0C851 137 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 XPAP23025 273 aaPredicted RBP10.32□□□□□ -0.76
LIG1-220ENST00000601091 CD52P31358 61 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 AKT1P31749 480 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 CHRNA4P43681 627 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 SLC5A3P53794 718 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 P2RX3P56373 397 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 ALDH6A1Q02252 535 aaKnown RBP10.32□□□□□ -0.76
LIG1-220ENST00000601091 BNIP2Q12982 314 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 GLT6D1Q7Z4J2 308 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 ZNF321PQ8N8H1 164 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 VANGL1Q8TAA9 524 aaPredicted RBP10.32□□□□□ -0.76
LIG1-220ENST00000601091 DNAJB14Q8TBM8 379 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 ARNTL2Q8WYA1 636 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 C19orf60Q96EN9 201 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 RNF145Q96MT1 663 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 PCDHGB4Q9UN71 923 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 PCDHB3Q9Y5E6 796 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 AP1M2Q9Y6Q5 423 aa10.32□□□□□ -0.76
LIG1-220ENST00000601091 SCN9AQ15858 1988 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 OR6C74A6NCV1 312 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 ARL5CA6NH57 179 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 BBIP1A8MTZ0 92 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 DEAF1O75398 565 aaPredicted RBP10.31□□□□□ -0.76
LIG1-220ENST00000601091 HLA-DPA1P20036 260 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 PIK3CBP42338 1070 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 RPL26P61254 145 aaKnown RBP10.31□□□□□ -0.76
LIG1-220ENST00000601091 RNF4P78317 190 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 ZNF33AQ06730 810 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 LGALS3BPQ08380 585 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 EFR3AQ14156 821 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 PKDCCQ504Y2 493 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 TIGD5Q53EQ6 642 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 CLEC6AQ6EIG7 209 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 LDB1Q86U70 411 aaPredicted RBP10.31□□□□□ -0.76
LIG1-220ENST00000601091 NPAS4Q8IUM7 802 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 LGI2Q8N0V4 545 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 NKAPQ8N5F7 415 aaKnown RBP10.31□□□□□ -0.76
LIG1-220ENST00000601091 RTL3Q8N8U3 475 aaKnown RBP10.31□□□□□ -0.76
LIG1-220ENST00000601091 LPCAT1Q8NF37 534 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 STYXQ8WUJ0 223 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 ST8SIA2Q92186 375 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 EGLN2Q96KS0 407 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 SLC2A13Q96QE2 648 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 ADAMTS10Q9H324 1103 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 ZBTB26Q9HCK0 441 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 EGFL7Q9UHF1 273 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 ENOPH1Q9UHY7 261 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 FGF1P05230 155 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 RHOCP08134 193 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 HIST1H2AGP0C0S8 130 aaPredicted RBP10.31□□□□□ -0.76
LIG1-220ENST00000601091 HIST1H2ADP20671 130 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 IL2P60568 153 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 SDHAF4Q5VUM1 108 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 CYP20A1Q6UW02 462 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 TP53INP2Q8IXH6 220 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 FAM126BQ8IXS8 530 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 SCAMP5Q8TAC9 235 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 EMID1Q96A84 441 aaPredicted RBP10.31□□□□□ -0.76
LIG1-220ENST00000601091 HIST1H2AHQ96KK5 128 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 GLT1D1Q96MS3 346 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 HIST1H2AJQ99878 128 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 H2AFJQ9BTM1 129 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 CLPBQ9H078 707 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 PLGRKTQ9HBL7 147 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 PTTG2Q9NZH5 202 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 ADGRE2Q9UHX3 823 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 ANAPC2Q9UJX6 822 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 POU2F3Q9UKI9 436 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 A0A1W2PQH9 124 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 IRAK2O43187 625 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 SLC7A4O43246 635 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 CNMDO75829 334 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 RPL35P42766 123 aaKnown RBP10.31□□□□□ -0.76
LIG1-220ENST00000601091 CCNIQ14094 377 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 DDR2Q16832 855 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 MTX3Q5HYI7 312 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 CACHD1Q5VU97 1274 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 FAM171A1Q5VUB5 890 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 UBR3Q6ZT12 1888 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 KCTD20Q7Z5Y7 419 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 GPSM1Q86YR5 675 aa10.31□□□□□ -0.76
LIG1-220ENST00000601091 OR4L1Q8NH43 312 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms