RNA–Protein interactions for RNA: YOL112W

MSB4, Transcript of GTPase-activating protein of the Ras superfamily, yeast

Gene MSB4, Length 1,479 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSB4	YOL112W	GIS4	Q04233	774 aa		10.9	□□□□□ -0.66
MSB4	YOL112W	RPL19A	P0CX82	189 aa	Known RBP	10.89	□□□□□ -0.67
MSB4	YOL112W	RPL19B	P0CX83	189 aa	Predicted RBP	10.89	□□□□□ -0.67
MSB4	YOL112W	VPS1	P21576	704 aa	Known RBP	10.89	□□□□□ -0.67
MSB4	YOL112W	MCR1	P36060	302 aa	Known RBP	10.89	□□□□□ -0.67
MSB4	YOL112W	TPM2	P40414	161 aa		10.89	□□□□□ -0.67
MSB4	YOL112W	BUD6	P41697	788 aa		10.89	□□□□□ -0.67
MSB4	YOL112W	YAF9	P53930	226 aa		10.89	□□□□□ -0.67
MSB4	YOL112W	GDE1	Q02979	1223 aa		10.89	□□□□□ -0.67
MSB4	YOL112W	CDC19	P00549	500 aa	Known RBP	10.88	□□□□□ -0.67
MSB4	YOL112W	CDC6	P09119	513 aa		10.88	□□□□□ -0.67
MSB4	YOL112W	MAK11	P20484	414 aa	Known RBP	10.88	□□□□□ -0.67
MSB4	YOL112W	SEC20	P28791	383 aa		10.88	□□□□□ -0.67
MSB4	YOL112W	UGA4	P32837	571 aa		10.88	□□□□□ -0.67
MSB4	YOL112W	PAN5	P38787	379 aa		10.88	□□□□□ -0.67
MSB4	YOL112W	PSF2	P40359	213 aa		10.88	□□□□□ -0.67
MSB4	YOL112W	YGL138C	P53122	345 aa		10.88	□□□□□ -0.67
MSB4	YOL112W	GUD1	Q07729	489 aa		10.88	□□□□□ -0.67
MSB4	YOL112W	ERP3	Q12403	225 aa		10.88	□□□□□ -0.67
MSB4	YOL112W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	10.87	□□□□□ -0.67	not detected
MSB4	YOL112W	CBP3	P21560	335 aa		10.87	□□□□□ -0.67
MSB4	YOL112W	VPS29	P38759	282 aa		10.87	□□□□□ -0.67
MSB4	YOL112W	CCT3	P39077	534 aa	Known RBP	10.87	□□□□□ -0.67
MSB4	YOL112W	LIF1	P53150	421 aa		10.87	□□□□□ -0.67
MSB4	YOL112W	SLD5	Q03406	294 aa		10.87	□□□□□ -0.67
MSB4	YOL112W	SMD2	Q06217	110 aa	Known RBP	10.87	□□□□□ -0.67
MSB4	YOL112W	PSK2	Q08217	1101 aa		10.87	□□□□□ -0.67
MSB4	YOL112W	OXR1	Q08952	273 aa		10.87	□□□□□ -0.67
MSB4	YOL112W	YDR461C-A	Q2V2P7	80 aa		10.87	□□□□□ -0.67
MSB4	YOL112W	VPS13	Q07878	3144 aa		10.87	□□□□□ -0.67
MSB4	YOL112W	CPA2	P03965	1118 aa	Known RBP	10.87	□□□□□ -0.67
MSB4	YOL112W	PCT1	P13259	424 aa		10.87	□□□□□ -0.67
MSB4	YOL112W	YGL039W	P53183	348 aa	Known RBP	10.87	□□□□□ -0.67
MSB4	YOL112W	YLR326W	Q06170	240 aa	Known RBP	10.87	□□□□□ -0.67
MSB4	YOL112W	ELG1	Q12050	791 aa		10.87	□□□□□ -0.67
MSB4	YOL112W	HSP82	P02829	709 aa	Known RBP	10.86	□□□□□ -0.67
MSB4	YOL112W	SUL1	P38359	859 aa		10.86	□□□□□ -0.67
MSB4	YOL112W	MXR1	P40029	184 aa		10.86	□□□□□ -0.67
MSB4	YOL112W	ULP1	Q02724	621 aa		10.86	□□□□□ -0.67
MSB4	YOL112W	TKL1	P23254	680 aa	Known RBP	10.85	□□□□□ -0.67
MSB4	YOL112W	PWP2	P25635	923 aa	Known RBP	10.85	□□□□□ -0.67
MSB4	YOL112W	RGT1	P32862	1170 aa		10.85	□□□□□ -0.67
MSB4	YOL112W	PAM1	P37304	830 aa	Known RBP	10.85	□□□□□ -0.67
MSB4	YOL112W	PRY3	P47033	881 aa		10.85	□□□□□ -0.67
MSB4	YOL112W	SCS3	P53012	380 aa		10.85	□□□□□ -0.67
MSB4	YOL112W	BRE5	P53741	515 aa	Known RBP	10.85	□□□□□ -0.67
MSB4	YOL112W	MET7	Q08645	548 aa		10.85	□□□□□ -0.67
MSB4	YOL112W	ICL2	Q12031	575 aa		10.85	□□□□□ -0.67
MSB4	YOL112W	YPL150W	Q12152	901 aa		10.85	□□□□□ -0.67
MSB4	YOL112W	SDH2	P21801	266 aa		10.84	□□□□□ -0.67
MSB4	YOL112W	YUR1	P26725	428 aa		10.84	□□□□□ -0.67
MSB4	YOL112W	DBP7	P36120	742 aa	Known RBP	10.84	□□□□□ -0.67
MSB4	YOL112W	REG2	P38232	338 aa		10.84	□□□□□ -0.67
MSB4	YOL112W	RFC5	P38251	354 aa		10.84	□□□□□ -0.67
MSB4	YOL112W	YGR273C	P53329	174 aa		10.84	□□□□□ -0.67
MSB4	YOL112W	YMR321C	Q04898	105 aa		10.84	□□□□□ -0.67
MSB4	YOL112W	DCS2	Q12123	353 aa		10.84	□□□□□ -0.67
MSB4	YOL112W	PAH1	P32567	862 aa		10.83	□□□□□ -0.68
MSB4	YOL112W	CIT3	P43635	486 aa		10.83	□□□□□ -0.68
MSB4	YOL112W	NAF1	P53919	492 aa	Known RBP	10.83	□□□□□ -0.68
MSB4	YOL112W	PTA1	Q01329	785 aa	Predicted RBP	10.83	□□□□□ -0.68
MSB4	YOL112W	WHI4	Q07655	649 aa	Known RBP	10.83	□□□□□ -0.68
MSB4	YOL112W	ISA1	Q07821	250 aa	Predicted RBP	10.83	□□□□□ -0.68
MSB4	YOL112W	MSC6	Q08818	692 aa	Known RBP	10.83	□□□□□ -0.68
MSB4	YOL112W	GET3	Q12154	354 aa	Known RBP	10.83	□□□□□ -0.68
MSB4	YOL112W	ARP6	Q12509	438 aa		10.83	□□□□□ -0.68
MSB4	YOL112W	PRX1	P34227	261 aa	Known RBP	10.82	□□□□□ -0.68
MSB4	YOL112W	TTI1	P36097	1038 aa		10.82	□□□□□ -0.68
MSB4	YOL112W	BNI5	P53890	448 aa	Known RBP	10.82	□□□□□ -0.68
MSB4	YOL112W	AIM33	Q04516	312 aa		10.82	□□□□□ -0.68
MSB4	YOL112W	PIB1	Q06651	286 aa		10.82	□□□□□ -0.68
MSB4	YOL112W	MOT1	P32333	1867 aa		10.82	□□□□□ -0.68
MSB4	YOL112W	BCS1	P32839	456 aa		10.81	□□□□□ -0.68
MSB4	YOL112W	SAS3	P34218	831 aa		10.81	□□□□□ -0.68
MSB4	YOL112W	RET3	P53600	189 aa		10.81	□□□□□ -0.68
MSB4	YOL112W	ORC4	P54791	529 aa		10.81	□□□□□ -0.68
MSB4	YOL112W	CEX1	Q12453	761 aa		10.81	□□□□□ -0.68
MSB4	YOL112W	MCM4	P30665	933 aa	Known RBP	10.81	□□□□□ -0.68
MSB4	YOL112W	TFC4	P33339	1025 aa		10.81	□□□□□ -0.68
MSB4	YOL112W	AFG3	P39925	761 aa		10.81	□□□□□ -0.68
MSB4	YOL112W	DSE4	P53753	1117 aa		10.81	□□□□□ -0.68
MSB4	YOL112W	SUT2	Q12286	268 aa		10.81	□□□□□ -0.68
MSB4	YOL112W	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	10.81	□□□□□ -0.68	not detected
MSB4	YOL112W	YOR131C	Q12486	218 aa		10.81	□□□□□ -0.68
MSB4	YOL112W	YGL081W	P53156	320 aa		10.8	□□□□□ -0.68
MSB4	YOL112W	VPS62	P53285	467 aa		10.8	□□□□□ -0.68
MSB4	YOL112W	TY1B-A	O13527	1196 aa	Known RBP	10.79	□□□□□ -0.68
MSB4	YOL112W	SES1	P07284	462 aa	Known RBP	10.79	□□□□□ -0.68
MSB4	YOL112W	THR4	P16120	514 aa	Known RBP	10.79	□□□□□ -0.68
MSB4	YOL112W	DBP1	P24784	617 aa	Known RBP	10.79	□□□□□ -0.68
MSB4	YOL112W	UBP11	P36026	717 aa		10.79	□□□□□ -0.68
MSB4	YOL112W	MAL33	P38157	468 aa		10.79	□□□□□ -0.68
MSB4	YOL112W	GAA1	P39012	614 aa		10.79	□□□□□ -0.68
MSB4	YOL112W	PIL1	P53252	339 aa	Known RBP	10.79	□□□□□ -0.68
MSB4	YOL112W	OYE2	Q03558	400 aa	Known RBP	10.79	□□□□□ -0.68
MSB4	YOL112W	TRS120	Q04183	1289 aa		10.79	□□□□□ -0.68
MSB4	YOL112W	TRM11	Q12463	433 aa		10.79	□□□□□ -0.68
MSB4	YOL112W	BIK1	P11709	440 aa		10.78	□□□□□ -0.68
MSB4	YOL112W	SRO9	P25567	434 aa	Known RBP	10.78	□□□□□ -0.68
MSB4	YOL112W	ASF1	P32447	279 aa		10.78	□□□□□ -0.68

Retrieved 100 of 5,963 RNA–protein pairs in 18.2 ms