RNA–Protein interactions for RNA: YNL016W

PUB1, Transcript of Poly (A)+ RNA-binding protein, yeast

Gene PUB1, Length 1,362 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PUB1	YNL016W	VAN1	P23642	535 aa		4.79	□□□□□ -1.64
PUB1	YNL016W	FUI1	P38196	639 aa		4.79	□□□□□ -1.64
PUB1	YNL016W	IRC24	P40580	263 aa		4.79	□□□□□ -1.64
PUB1	YNL016W	SLM3	Q12093	417 aa		4.79	□□□□□ -1.64
PUB1	YNL016W	TRS33	Q99394	268 aa		4.79	□□□□□ -1.64
PUB1	YNL016W	YRF1-4	O13559	1382 aa		4.79	□□□□□ -1.64
PUB1	YNL016W	THS1	P04801	734 aa	Known RBP	4.78	□□□□□ -1.64
PUB1	YNL016W	PHO8	P11491	566 aa		4.78	□□□□□ -1.64
PUB1	YNL016W	CYC8	P14922	966 aa		4.78	□□□□□ -1.64
PUB1	YNL016W	GRX1	P25373	110 aa	Known RBP	4.78	□□□□□ -1.64
PUB1	YNL016W	GCD6	P32501	712 aa	Known RBP	4.78	□□□□□ -1.64
PUB1	YNL016W	SUV3	P32580	737 aa		4.78	□□□□□ -1.64
PUB1	YNL016W	PEP7	P32609	515 aa		4.78	□□□□□ -1.64
PUB1	YNL016W	TOA1	P32773	286 aa		4.78	□□□□□ -1.64
PUB1	YNL016W	PET112	P33893	541 aa		4.78	□□□□□ -1.64
PUB1	YNL016W	MPE1	P35728	441 aa	Known RBP	4.78	□□□□□ -1.64
PUB1	YNL016W	ISW1	P38144	1129 aa		4.78	□□□□□ -1.64
PUB1	YNL016W	RPS26A	P39938	119 aa	Known RBP	4.78	□□□□□ -1.64
PUB1	YNL016W	RPS26B	P39939	119 aa	Known RBP	4.78	□□□□□ -1.64
PUB1	YNL016W	VPS27	P40343	622 aa	Known RBP	4.78	□□□□□ -1.64
PUB1	YNL016W	YGR122W	P53272	402 aa		4.78	□□□□□ -1.64
PUB1	YNL016W	SVL3	Q03088	825 aa	Known RBP	4.78	□□□□□ -1.64
PUB1	YNL016W	TIM23	P32897	222 aa		4.78	□□□□□ -1.64
PUB1	YNL016W	VPS35	P34110	944 aa		4.78	□□□□□ -1.64
PUB1	YNL016W	NOC2	P39744	710 aa	Known RBP	4.78	□□□□□ -1.64
PUB1	YNL016W	POL5	P39985	1022 aa	Known RBP	4.78	□□□□□ -1.64
PUB1	YNL016W	AIM21	P40563	679 aa		4.78	□□□□□ -1.64
PUB1	YNL016W	YPR084W	Q06821	456 aa		4.78	□□□□□ -1.64
PUB1	YNL016W	YLR125W	Q12138	136 aa		4.78	□□□□□ -1.64
PUB1	YNL016W	SPT7	P35177	1332 aa		4.77	□□□□□ -1.65
PUB1	YNL016W	APC1	P53886	1748 aa		4.77	□□□□□ -1.65
PUB1	YNL016W	RAD4	P14736	754 aa		4.77	□□□□□ -1.65
PUB1	YNL016W	SRM1	P21827	482 aa		4.77	□□□□□ -1.65
PUB1	YNL016W	DPB3	P27344	201 aa		4.77	□□□□□ -1.65
PUB1	YNL016W	GUT2	P32191	649 aa		4.77	□□□□□ -1.65
PUB1	YNL016W	MFT1	P33441	392 aa	Known RBP	4.77	□□□□□ -1.65
PUB1	YNL016W	MAC1	P35192	417 aa		4.77	□□□□□ -1.65
PUB1	YNL016W	SOH1	P38633	127 aa		4.77	□□□□□ -1.65
PUB1	YNL016W	CRP1	P38845	465 aa	Known RBP	4.77	□□□□□ -1.65
PUB1	YNL016W	EAF6	P47128	113 aa		4.77	□□□□□ -1.65
PUB1	YNL016W	PEX8	P53248	589 aa		4.77	□□□□□ -1.65
PUB1	YNL016W	CWC24	P53769	259 aa		4.77	□□□□□ -1.65
PUB1	YNL016W	STE20	Q03497	939 aa	Known RBP	4.77	□□□□□ -1.65
PUB1	YNL016W	COG4	Q06096	861 aa		4.77	□□□□□ -1.65
PUB1	YNL016W	APC11	Q12157	165 aa		4.77	□□□□□ -1.65
PUB1	YNL016W	CDC19	P00549	500 aa	Known RBP	4.76	□□□□□ -1.65
PUB1	YNL016W	TEC1	P18412	486 aa		4.76	□□□□□ -1.65
PUB1	YNL016W	TRX2	P22803	104 aa	Known RBP	4.76	□□□□□ -1.65
PUB1	YNL016W	RAD27	P26793	382 aa		4.76	□□□□□ -1.65
PUB1	YNL016W	YHR020W	P38708	688 aa	Known RBP	4.76	□□□□□ -1.65
PUB1	YNL016W	CHZ1	P40019	153 aa	Predicted RBP	4.76	□□□□□ -1.65
PUB1	YNL016W	RPT2	P40327	437 aa	Known RBP	4.76	□□□□□ -1.65
PUB1	YNL016W	XKS1	P42826	600 aa		4.76	□□□□□ -1.65
PUB1	YNL016W	UFD2	P54860	961 aa		4.76	□□□□□ -1.65
PUB1	YNL016W	NAN1	Q02931	896 aa	Known RBP	4.76	□□□□□ -1.65
PUB1	YNL016W	GDE1	Q02979	1223 aa		4.76	□□□□□ -1.65
PUB1	YNL016W	VMS1	Q04311	632 aa	Known RBP	4.76	□□□□□ -1.65
PUB1	YNL016W	ALR1	Q08269	859 aa		4.76	□□□□□ -1.65
PUB1	YNL016W	YIL177C	P40434	1758 aa		4.76	□□□□□ -1.65
PUB1	YNL016W	YJL225C	P40889	1758 aa		4.76	□□□□□ -1.65
PUB1	YNL016W	PDI1	P17967	522 aa	Known RBP	4.75	□□□□□ -1.65
PUB1	YNL016W	ESL2	P36168	1195 aa		4.75	□□□□□ -1.65
PUB1	YNL016W	SPF1	P39986	1215 aa	Known RBP	4.75	□□□□□ -1.65
PUB1	YNL016W	FIG4	P42837	879 aa		4.75	□□□□□ -1.65
PUB1	YNL016W	FOL1	P53848	824 aa		4.75	□□□□□ -1.65
PUB1	YNL016W	CUZ1	P53899	274 aa		4.75	□□□□□ -1.65
PUB1	YNL016W	YOR378W	Q08902	515 aa		4.75	□□□□□ -1.65
PUB1	YNL016W	NOP14	Q99207	810 aa	Known RBP	4.75	□□□□□ -1.65
PUB1	YNL016W	HXK1	P04806	485 aa	Known RBP	4.74	□□□□□ -1.65
PUB1	YNL016W	CDC11	P32458	415 aa		4.74	□□□□□ -1.65
PUB1	YNL016W	CEM1	P39525	442 aa		4.74	□□□□□ -1.65
PUB1	YNL016W	SNF7	P39929	240 aa	Known RBP	4.74	□□□□□ -1.65
PUB1	YNL016W	TIM54	P47045	478 aa		4.74	□□□□□ -1.65
PUB1	YNL016W	PRP43	P53131	767 aa	Known RBP	4.74	□□□□□ -1.65
PUB1	YNL016W	ESF2	P53743	316 aa	Known RBP	4.74	□□□□□ -1.65
PUB1	YNL016W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.74	□□□□□ -1.65	not detected
PUB1	YNL016W	RPS24A	P0CX31	135 aa	Known RBP	4.73	□□□□□ -1.65
PUB1	YNL016W	RPS24B	P0CX32	135 aa	Known RBP	4.73	□□□□□ -1.65
PUB1	YNL016W	THI4	P32318	326 aa		4.73	□□□□□ -1.65
PUB1	YNL016W	YFL034W	P43564	1073 aa		4.73	□□□□□ -1.65
PUB1	YNL016W	FAA4	P47912	694 aa	Known RBP	4.73	□□□□□ -1.65
PUB1	YNL016W	RPA14	P50106	137 aa		4.73	□□□□□ -1.65
PUB1	YNL016W	ADE12	P80210	433 aa	Known RBP	4.73	□□□□□ -1.65
PUB1	YNL016W	CDC55	Q00362	526 aa		4.73	□□□□□ -1.65
PUB1	YNL016W	TBF1	Q02457	562 aa		4.73	□□□□□ -1.65
PUB1	YNL016W	YPL034W	Q03083	165 aa		4.73	□□□□□ -1.65
PUB1	YNL016W	TDA5	Q06417	326 aa	Known RBP	4.73	□□□□□ -1.65
PUB1	YNL016W	YLR419W	Q06698	1435 aa	Known RBP	4.73	□□□□□ -1.65
PUB1	YNL016W	YPR097W	Q06839	1073 aa		4.73	□□□□□ -1.65
PUB1	YNL016W	RPB10	P22139	70 aa		4.72	□□□□□ -1.65
PUB1	YNL016W	AMN1	P38285	549 aa	Predicted RBP	4.72	□□□□□ -1.65
PUB1	YNL016W	SAM37	P50110	327 aa		4.72	□□□□□ -1.65
PUB1	YNL016W	SPO20	Q04359	397 aa		4.72	□□□□□ -1.65
PUB1	YNL016W	TOS4	Q06266	489 aa		4.72	□□□□□ -1.65
PUB1	YNL016W	OPI10	Q08202	246 aa		4.72	□□□□□ -1.65
PUB1	YNL016W	HIF1	Q12373	385 aa		4.72	□□□□□ -1.65
PUB1	YNL016W	YDL206W	Q12424	762 aa		4.72	□□□□□ -1.65
PUB1	YNL016W	ATP4	P05626	244 aa		4.71	□□□□□ -1.66
PUB1	YNL016W	CDC34	P14682	295 aa		4.71	□□□□□ -1.66
PUB1	YNL016W	YCK2	P23292	546 aa	Known RBP	4.71	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 65.9 ms