RNA–Protein interactions for RNA: YMR200W

ROT1, Transcript of Molecular chaperone involved in protein folding in ER, yeastyeast

Gene ROT1, Length 771 nt, Biotype protein coding, Subcellular localisation Mitochondria .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ROT1YMR200W ELA1P53861 379 aaPredicted RBP6.31□□□□□ -1.4
ROT1YMR200W FPR3P38911 411 aaKnown RBP6.3□□□□□ -1.4
ROT1YMR200W AVT1P47082 602 aa6.3□□□□□ -1.4
ROT1YMR200W JSN1P47135 1091 aaKnown RBP RIP-Chip data6.3□□□□□ -1.4not detected
ROT1YMR200W ALT1P52893 592 aa6.3□□□□□ -1.4
ROT1YMR200W GCD6P32501 712 aaKnown RBP6.29□□□□□ -1.4
ROT1YMR200W SEC8P32855 1065 aa6.29□□□□□ -1.4
ROT1YMR200W VPS35P34110 944 aa6.29□□□□□ -1.4
ROT1YMR200W YKL077WP36081 392 aa6.29□□□□□ -1.4
ROT1YMR200W OYE3P41816 400 aaPredicted RBP6.29□□□□□ -1.4
ROT1YMR200W THI12P42883 340 aa6.29□□□□□ -1.4
ROT1YMR200W THI5P43534 340 aa6.29□□□□□ -1.4
ROT1YMR200W THI11P47183 340 aa6.29□□□□□ -1.4
ROT1YMR200W RCM1P53972 490 aa6.29□□□□□ -1.4
ROT1YMR200W NOG1Q02892 647 aaKnown RBP6.29□□□□□ -1.4
ROT1YMR200W DAL4Q04895 635 aa6.29□□□□□ -1.4
ROT1YMR200W THI13Q07748 340 aa6.29□□□□□ -1.4
ROT1YMR200W SRP40P32583 406 aaPredicted RBP6.28□□□□□ -1.4
ROT1YMR200W ARL1P38116 183 aaKnown RBP6.28□□□□□ -1.4
ROT1YMR200W MSH3P25336 1018 aa6.27□□□□□ -1.41
ROT1YMR200W NFS1P25374 497 aa6.27□□□□□ -1.41
ROT1YMR200W NAB3P38996 802 aaKnown RBP RIP-Chip data6.27□□□□□ -1.41 RIP-Chip
ROT1YMR200W MDG1P53885 366 aa6.27□□□□□ -1.41
ROT1YMR200W ULP1Q02724 621 aa6.27□□□□□ -1.41
ROT1YMR200W AVO1Q08236 1176 aa6.27□□□□□ -1.41
ROT1YMR200W SMY2P32909 740 aaKnown RBP6.26□□□□□ -1.41
ROT1YMR200W LRG1P35688 1017 aa6.26□□□□□ -1.41
ROT1YMR200W SHU2P38957 223 aa6.26□□□□□ -1.41
ROT1YMR200W PEX13P80667 386 aa6.26□□□□□ -1.41
ROT1YMR200W YKL091CP33324 310 aaKnown RBP6.25□□□□□ -1.41
ROT1YMR200W FAA3P39002 694 aa6.25□□□□□ -1.41
ROT1YMR200W VAC8P39968 578 aa6.25□□□□□ -1.41
ROT1YMR200W UTP5Q04177 643 aaKnown RBP6.25□□□□□ -1.41
ROT1YMR200W YOR059CQ08448 450 aaKnown RBP6.25□□□□□ -1.41
ROT1YMR200W YVC1Q12324 675 aa6.25□□□□□ -1.41
ROT1YMR200W MGE1P38523 228 aa6.24□□□□□ -1.41
ROT1YMR200W RSM26P47141 266 aa6.24□□□□□ -1.41
ROT1YMR200W ALG12P53730 551 aa6.24□□□□□ -1.41
ROT1YMR200W CIT2P08679 460 aa6.23□□□□□ -1.41
ROT1YMR200W NNK1P36003 928 aa6.23□□□□□ -1.41
ROT1YMR200W POL12P38121 705 aaPredicted RBP6.23□□□□□ -1.41
ROT1YMR200W YAR028WP39548 234 aa6.23□□□□□ -1.41
ROT1YMR200W IRC24P40580 263 aa6.23□□□□□ -1.41
ROT1YMR200W HEM13P11353 328 aaKnown RBP6.22□□□□□ -1.41
ROT1YMR200W SSB1P11484 613 aaKnown RBP6.22□□□□□ -1.41
ROT1YMR200W KAR2P16474 682 aaKnown RBP6.22□□□□□ -1.41
ROT1YMR200W RPT1P33299 467 aaKnown RBP6.22□□□□□ -1.41
ROT1YMR200W PEX28P38848 579 aa6.22□□□□□ -1.41
ROT1YMR200W NMD3P38861 518 aaKnown RBP6.22□□□□□ -1.41
ROT1YMR200W PEX7P39108 375 aa6.22□□□□□ -1.41
ROT1YMR200W SSB2P40150 613 aaKnown RBP6.22□□□□□ -1.41
ROT1YMR200W XKS1P42826 600 aa6.22□□□□□ -1.41
ROT1YMR200W MTR4P47047 1073 aaKnown RBP6.22□□□□□ -1.41
ROT1YMR200W YPL109CQ02981 657 aa6.22□□□□□ -1.41
ROT1YMR200W NSI1Q12457 570 aa6.22□□□□□ -1.41
ROT1YMR200W ELM1P32801 640 aa6.21□□□□□ -1.42
ROT1YMR200W SEG2P34250 1132 aa6.21□□□□□ -1.42
ROT1YMR200W SQT1P35184 431 aa6.21□□□□□ -1.42
ROT1YMR200W IOC3P43596 787 aa6.21□□□□□ -1.42
ROT1YMR200W PUS7Q08647 676 aaKnown RBP6.21□□□□□ -1.42
ROT1YMR200W TRE1Q08919 783 aa6.21□□□□□ -1.42
ROT1YMR200W HXK1P04806 485 aaKnown RBP6.2□□□□□ -1.42
ROT1YMR200W HSP78P33416 811 aa6.2□□□□□ -1.42
ROT1YMR200W RDH54P38086 958 aa6.2□□□□□ -1.42
ROT1YMR200W TPM2P40414 161 aa6.2□□□□□ -1.42
ROT1YMR200W ZDS1P50111 915 aaKnown RBP6.2□□□□□ -1.42
ROT1YMR200W ALD6P54115 500 aaKnown RBP6.2□□□□□ -1.42
ROT1YMR200W SSY1Q03770 852 aa6.2□□□□□ -1.42
ROT1YMR200W TPP1Q03796 238 aa6.2□□□□□ -1.42
ROT1YMR200W POB3Q04636 552 aaKnown RBP6.2□□□□□ -1.42
ROT1YMR200W AOS1Q06624 347 aa6.2□□□□□ -1.42
ROT1YMR200W OXR1Q08952 273 aa6.2□□□□□ -1.42
ROT1YMR200W DFG16Q99234 619 aa6.2□□□□□ -1.42
ROT1YMR200W PMC1P38929 1173 aaPredicted RBP6.19□□□□□ -1.42
ROT1YMR200W PIC2P40035 300 aa6.19□□□□□ -1.42
ROT1YMR200W YJR107WP47145 328 aa6.19□□□□□ -1.42
ROT1YMR200W YGL140CP53120 1219 aa6.19□□□□□ -1.42
ROT1YMR200W UBP3Q01477 912 aaKnown RBP RIP-Chip data6.19□□□□□ -1.42not detected
ROT1YMR200W ADI1Q03677 179 aa6.19□□□□□ -1.42
ROT1YMR200W YLR257WQ06146 321 aaKnown RBP6.19□□□□□ -1.42
ROT1YMR200W SCP160P06105 1222 aaKnown RBP RIP-Chip data6.18□□□□□ -1.42 RIP-Chip
ROT1YMR200W VMA4P22203 233 aaKnown RBP6.18□□□□□ -1.42
ROT1YMR200W RET1P22276 1149 aaKnown RBP6.18□□□□□ -1.42
ROT1YMR200W RNQ1P25367 405 aa6.18□□□□□ -1.42
ROT1YMR200W YNR063WP53749 607 aa6.18□□□□□ -1.42
ROT1YMR200W RSA3Q05942 220 aaKnown RBP6.18□□□□□ -1.42
ROT1YMR200W YOL057WQ08225 711 aa6.18□□□□□ -1.42
ROT1YMR200W LPX1Q12405 387 aaKnown RBP6.18□□□□□ -1.42
ROT1YMR200W ADP1P25371 1049 aa6.17□□□□□ -1.42
ROT1YMR200W PRO1P32264 428 aa6.17□□□□□ -1.42
ROT1YMR200W SEC23P15303 768 aaKnown RBP6.16□□□□□ -1.42
ROT1YMR200W PTC7P38797 343 aa6.16□□□□□ -1.42
ROT1YMR200W MAD1P40957 749 aa6.16□□□□□ -1.42
ROT1YMR200W NSE3Q05541 303 aa6.16□□□□□ -1.42
ROT1YMR200W GRX4P32642 244 aa6.15□□□□□ -1.42
ROT1YMR200W ECL1P48235 211 aa6.15□□□□□ -1.42
ROT1YMR200W SAM35P14693 329 aa6.14□□□□□ -1.43
ROT1YMR200W AFG2P32794 780 aa6.14□□□□□ -1.43
ROT1YMR200W FYV10P40492 516 aa6.14□□□□□ -1.43
ROT1YMR200W GTS1P40956 396 aa6.14□□□□□ -1.43
Retrieved 100 of 5,963 RNA–protein pairs in 38.1 ms