RNA–Protein interactions for RNA: YLR240W

VPS34, Transcript of Phosphatidylinositol (PI) 3-kinase that synthesizes PI-3-phosphate, yeast

Gene VPS34, Length 2,628 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS34	YLR240W	SMY2	P32909	740 aa	Known RBP	2.93	□□□□□ -1.94
VPS34	YLR240W	YAR028W	P39548	234 aa		2.93	□□□□□ -1.94
VPS34	YLR240W	MSH4	P40965	878 aa	Predicted RBP	2.93	□□□□□ -1.94
VPS34	YLR240W	ALT1	P52893	592 aa		2.93	□□□□□ -1.94
VPS34	YLR240W	SVF1	Q05515	481 aa		2.93	□□□□□ -1.94
VPS34	YLR240W	AVO1	Q08236	1176 aa		2.93	□□□□□ -1.94
VPS34	YLR240W	MYO2	P19524	1574 aa	Known RBP	2.93	□□□□□ -1.94
VPS34	YLR240W	CHS2	P14180	963 aa		2.93	□□□□□ -1.94
VPS34	YLR240W	PEP7	P32609	515 aa		2.93	□□□□□ -1.94
VPS34	YLR240W	ADD66	P36040	267 aa		2.93	□□□□□ -1.94
VPS34	YLR240W	KAE1	P36132	386 aa		2.93	□□□□□ -1.94
VPS34	YLR240W	ELA1	P53861	379 aa	Predicted RBP	2.93	□□□□□ -1.94
VPS34	YLR240W	SIW14	P53965	281 aa		2.93	□□□□□ -1.94
VPS34	YLR240W	PET112	P33893	541 aa		2.92	□□□□□ -1.94
VPS34	YLR240W	NNK1	P36003	928 aa		2.92	□□□□□ -1.94
VPS34	YLR240W	ATG14	P38270	344 aa		2.92	□□□□□ -1.94
VPS34	YLR240W	MRL1	Q06815	381 aa		2.92	□□□□□ -1.94
VPS34	YLR240W	REV3	P14284	1504 aa		2.92	□□□□□ -1.94
VPS34	YLR240W	SSK2	P53599	1579 aa		2.92	□□□□□ -1.94
VPS34	YLR240W	NAP1	P25293	417 aa	Known RBP	2.92	□□□□□ -1.94
VPS34	YLR240W	HSE1	P38753	452 aa		2.92	□□□□□ -1.94
VPS34	YLR240W	HXT13	P39924	564 aa		2.92	□□□□□ -1.94
VPS34	YLR240W	MMM1	P41800	426 aa		2.92	□□□□□ -1.94
VPS34	YLR240W	HXT17	P53631	564 aa		2.92	□□□□□ -1.94
VPS34	YLR240W	HXT15	P54854	567 aa		2.92	□□□□□ -1.94
VPS34	YLR240W	EST2	Q06163	884 aa		2.92	□□□□□ -1.94
VPS34	YLR240W	LAP2	Q10740	671 aa		2.92	□□□□□ -1.94
VPS34	YLR240W	XRN1	P22147	1528 aa	Known RBP	2.92	□□□□□ -1.94
VPS34	YLR240W	GCR1	P07261	785 aa		2.91	□□□□□ -1.94
VPS34	YLR240W	MSB1	P21339	1137 aa	Known RBP	2.91	□□□□□ -1.94
VPS34	YLR240W	NFS1	P25374	497 aa		2.91	□□□□□ -1.94
VPS34	YLR240W	MNR2	P35724	969 aa		2.91	□□□□□ -1.94
VPS34	YLR240W	CIT3	P43635	486 aa		2.91	□□□□□ -1.94
VPS34	YLR240W	RSA3	Q05942	220 aa	Known RBP	2.91	□□□□□ -1.94
VPS34	YLR240W	YOR059C	Q08448	450 aa	Known RBP	2.91	□□□□□ -1.94
VPS34	YLR240W	RPS4A	P0CX35	261 aa	Known RBP	2.91	□□□□□ -1.94
VPS34	YLR240W	RPS4B	P0CX36	261 aa	Known RBP	2.91	□□□□□ -1.94
VPS34	YLR240W	AFG2	P32794	780 aa		2.91	□□□□□ -1.94
VPS34	YLR240W	PAM1	P37304	830 aa	Known RBP	2.91	□□□□□ -1.94
VPS34	YLR240W	RTT10	Q08924	1013 aa		2.91	□□□□□ -1.94
VPS34	YLR240W	MKK2	P32491	506 aa		2.9	□□□□□ -1.94
VPS34	YLR240W	DUT1	P33317	147 aa		2.9	□□□□□ -1.94
VPS34	YLR240W	WHI3	P34761	661 aa	Known RBP	2.9	□□□□□ -1.94
VPS34	YLR240W	VPS53	P47061	822 aa		2.9	□□□□□ -1.94
VPS34	YLR240W	ROD1	Q02805	837 aa		2.9	□□□□□ -1.94
VPS34	YLR240W	ESP1	Q03018	1630 aa		2.9	□□□□□ -1.95
VPS34	YLR240W	DED1	P06634	604 aa	Known RBP	2.9	□□□□□ -1.95
VPS34	YLR240W	SBP1	P10080	294 aa	Known RBP	2.9	□□□□□ -1.95
VPS34	YLR240W	CDC34	P14682	295 aa		2.9	□□□□□ -1.95
VPS34	YLR240W	YKR073C	P36153	106 aa		2.9	□□□□□ -1.95
VPS34	YLR240W	MET10	P39692	1035 aa		2.9	□□□□□ -1.95
VPS34	YLR240W	YGR130C	P53278	816 aa		2.9	□□□□□ -1.95
VPS34	YLR240W	YNR063W	P53749	607 aa		2.9	□□□□□ -1.95
VPS34	YLR240W	EAR1	Q03212	550 aa		2.9	□□□□□ -1.95
VPS34	YLR240W	YLR257W	Q06146	321 aa	Known RBP	2.9	□□□□□ -1.95
VPS34	YLR240W	HRK1	Q08732	759 aa	Known RBP	2.9	□□□□□ -1.95
VPS34	YLR240W	TRP3	P00937	484 aa		2.89	□□□□□ -1.95
VPS34	YLR240W	RET1	P22276	1149 aa	Known RBP	2.89	□□□□□ -1.95
VPS34	YLR240W	QNS1	P38795	714 aa	Known RBP	2.89	□□□□□ -1.95
VPS34	YLR240W	MED7	Q08278	222 aa		2.89	□□□□□ -1.95
VPS34	YLR240W	PUS7	Q08647	676 aa	Known RBP	2.89	□□□□□ -1.95
VPS34	YLR240W	CLN2	P20438	545 aa		2.89	□□□□□ -1.95
VPS34	YLR240W	ALG3	P38179	458 aa		2.89	□□□□□ -1.95
VPS34	YLR240W	OYE3	P41816	400 aa	Predicted RBP	2.89	□□□□□ -1.95
VPS34	YLR240W	RAT1	Q02792	1006 aa	Known RBP	2.89	□□□□□ -1.95
VPS34	YLR240W	TPP1	Q03796	238 aa		2.89	□□□□□ -1.95
VPS34	YLR240W	TMA46	Q12000	345 aa	Known RBP	2.89	□□□□□ -1.95
VPS34	YLR240W	PIN2	Q12057	282 aa		2.89	□□□□□ -1.95
VPS34	YLR240W	CYC7	P00045	113 aa		2.89	□□□□□ -1.95
VPS34	YLR240W	VPS16	Q03308	798 aa		2.89	□□□□□ -1.95
VPS34	YLR240W	YVC1	Q12324	675 aa		2.89	□□□□□ -1.95
VPS34	YLR240W	PTC5	Q12511	572 aa		2.89	□□□□□ -1.95
VPS34	YLR240W	SYP1	P25623	870 aa	Known RBP	2.88	□□□□□ -1.95
VPS34	YLR240W	RAD27	P26793	382 aa		2.88	□□□□□ -1.95
VPS34	YLR240W	TOS1	P38288	455 aa		2.88	□□□□□ -1.95
VPS34	YLR240W	CNN1	P43618	361 aa		2.88	□□□□□ -1.95
VPS34	YLR240W	YJL045W	P47052	634 aa		2.88	□□□□□ -1.95
VPS34	YLR240W	INP52	P50942	1183 aa		2.88	□□□□□ -1.95
VPS34	YLR240W	RCM1	P53972	490 aa		2.88	□□□□□ -1.95
VPS34	YLR240W	CHD1	P32657	1468 aa		2.88	□□□□□ -1.95
VPS34	YLR240W	DBP5	P20449	482 aa	Known RBP	2.88	□□□□□ -1.95
VPS34	YLR240W	RER2	P35196	286 aa		2.88	□□□□□ -1.95
VPS34	YLR240W	ALO1	P54783	526 aa	Known RBP	2.88	□□□□□ -1.95
VPS34	YLR240W	EEB1	Q02891	456 aa		2.88	□□□□□ -1.95
VPS34	YLR240W	JIP5	Q06214	492 aa	Predicted RBP	2.88	□□□□□ -1.95
VPS34	YLR240W	NSI1	Q12457	570 aa		2.88	□□□□□ -1.95
VPS34	YLR240W	BUD4	P47136	1447 aa		2.87	□□□□□ -1.95
VPS34	YLR240W	TRP2	P00899	507 aa	Known RBP	2.87	□□□□□ -1.95
VPS34	YLR240W	GCD1	P09032	578 aa	Predicted RBP	2.87	□□□□□ -1.95
VPS34	YLR240W	RGD1	P38339	666 aa		2.87	□□□□□ -1.95
VPS34	YLR240W	NMD3	P38861	518 aa	Known RBP	2.87	□□□□□ -1.95
VPS34	YLR240W	MAD1	P40957	749 aa		2.87	□□□□□ -1.95
VPS34	YLR240W	MAG2	Q06436	670 aa	Known RBP	2.87	□□□□□ -1.95
VPS34	YLR240W	YPL260W	Q08977	551 aa		2.87	□□□□□ -1.95
VPS34	YLR240W	SAM35	P14693	329 aa		2.87	□□□□□ -1.95
VPS34	YLR240W	KIP1	P28742	1111 aa		2.87	□□□□□ -1.95
VPS34	YLR240W	YGR053C	P53234	283 aa		2.87	□□□□□ -1.95
VPS34	YLR240W	DNA2	P38859	1522 aa		2.86	□□□□□ -1.95
VPS34	YLR240W	LYP1	P32487	611 aa		2.86	□□□□□ -1.95
VPS34	YLR240W	PUB1	P32588	453 aa	Known RBP RIP-Chip data	2.86	□□□□□ -1.95	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 14.4 ms