RNA–Protein interactions for RNA: YKL173W

SNU114, Transcript of GTPase component of U5 snRNP involved in mRNA splicing via spliceosome, yeast

Gene SNU114, Length 3,027 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNU114	YKL173W	RPS26A	P39938	119 aa	Known RBP	3.17	□□□□□ -1.9
SNU114	YKL173W	RPS26B	P39939	119 aa	Known RBP	3.17	□□□□□ -1.9
SNU114	YKL173W	MSH4	P40965	878 aa	Predicted RBP	3.17	□□□□□ -1.9
SNU114	YKL173W	YGR045C	P53229	120 aa		3.17	□□□□□ -1.9
SNU114	YKL173W	ALG12	P53730	551 aa		3.17	□□□□□ -1.9
SNU114	YKL173W	GPT2	P36148	743 aa		3.17	□□□□□ -1.9
SNU114	YKL173W	NSE3	Q05541	303 aa		3.17	□□□□□ -1.9
SNU114	YKL173W	GIC2	Q06648	383 aa		3.17	□□□□□ -1.9
SNU114	YKL173W	YLL054C	Q12244	843 aa		3.17	□□□□□ -1.9
SNU114	YKL173W	KAE1	P36132	386 aa		3.17	□□□□□ -1.9
SNU114	YKL173W	ECM2	P38241	364 aa	Known RBP	3.17	□□□□□ -1.9
SNU114	YKL173W	REI1	P38344	393 aa	Predicted RBP	3.17	□□□□□ -1.9
SNU114	YKL173W	SPO74	P45819	413 aa		3.17	□□□□□ -1.9
SNU114	YKL173W	ORC3	P54790	616 aa		3.17	□□□□□ -1.9
SNU114	YKL173W	EAR1	Q03212	550 aa		3.17	□□□□□ -1.9
SNU114	YKL173W	DOT1	Q04089	582 aa	Known RBP	3.17	□□□□□ -1.9
SNU114	YKL173W	PPM2	Q08282	695 aa		3.17	□□□□□ -1.9
SNU114	YKL173W	CHS2	P14180	963 aa		3.16	□□□□□ -1.9
SNU114	YKL173W	PRE9	P23638	258 aa	Known RBP	3.16	□□□□□ -1.9
SNU114	YKL173W	AFG2	P32794	780 aa		3.16	□□□□□ -1.9
SNU114	YKL173W	OYE3	P41816	400 aa	Predicted RBP	3.16	□□□□□ -1.9
SNU114	YKL173W	RKM2	Q03942	479 aa		3.16	□□□□□ -1.9
SNU114	YKL173W	URN1	Q06525	465 aa	Known RBP	3.16	□□□□□ -1.9
SNU114	YKL173W	BDF2	Q07442	638 aa		3.16	□□□□□ -1.9
SNU114	YKL173W	TOP1	P04786	769 aa		3.16	□□□□□ -1.9
SNU114	YKL173W	RAD2	P07276	1031 aa		3.16	□□□□□ -1.9
SNU114	YKL173W	TAF13	P11747	167 aa		3.15	□□□□□ -1.9
SNU114	YKL173W	KAR2	P16474	682 aa	Known RBP	3.15	□□□□□ -1.9
SNU114	YKL173W	PUB1	P32588	453 aa	Known RBP RIP-Chip data	3.15	□□□□□ -1.9	RIP-Chip
SNU114	YKL173W	SMY2	P32909	740 aa	Known RBP	3.15	□□□□□ -1.9
SNU114	YKL173W	PEX28	P38848	579 aa		3.15	□□□□□ -1.9
SNU114	YKL173W	YJR008W	P47085	338 aa		3.15	□□□□□ -1.9
SNU114	YKL173W	ALG6	Q12001	544 aa	Known RBP	3.15	□□□□□ -1.9
SNU114	YKL173W	MSB1	P21339	1137 aa	Known RBP	3.15	□□□□□ -1.91
SNU114	YKL173W	DUT1	P33317	147 aa		3.15	□□□□□ -1.91
SNU114	YKL173W	PBP2	P38151	413 aa	Known RBP RIP-Chip data	3.15	□□□□□ -1.91	not detected
SNU114	YKL173W	AKR1	P39010	764 aa		3.15	□□□□□ -1.91
SNU114	YKL173W	GCD1	P09032	578 aa	Predicted RBP	3.14	□□□□□ -1.91
SNU114	YKL173W	SAM35	P14693	329 aa		3.14	□□□□□ -1.91
SNU114	YKL173W	SRP40	P32583	406 aa	Predicted RBP	3.14	□□□□□ -1.91
SNU114	YKL173W	YHR020W	P38708	688 aa	Known RBP	3.14	□□□□□ -1.91
SNU114	YKL173W	SHU2	P38957	223 aa		3.14	□□□□□ -1.91
SNU114	YKL173W	PEX7	P39108	375 aa		3.14	□□□□□ -1.91
SNU114	YKL173W	HDA2	Q06629	674 aa		3.14	□□□□□ -1.91
SNU114	YKL173W	UBX5	Q06682	500 aa		3.14	□□□□□ -1.91
SNU114	YKL173W	MED7	Q08278	222 aa		3.14	□□□□□ -1.91
SNU114	YKL173W	OXR1	Q08952	273 aa		3.14	□□□□□ -1.91
SNU114	YKL173W	MCD1	Q12158	566 aa		3.14	□□□□□ -1.91
SNU114	YKL173W	YKL077W	P36081	392 aa		3.14	□□□□□ -1.91
SNU114	YKL173W	ENT3	P47160	408 aa		3.14	□□□□□ -1.91
SNU114	YKL173W	YGR130C	P53278	816 aa		3.14	□□□□□ -1.91
SNU114	YKL173W	YVC1	Q12324	675 aa		3.14	□□□□□ -1.91
SNU114	YKL173W	RPS4A	P0CX35	261 aa	Known RBP	3.14	□□□□□ -1.91
SNU114	YKL173W	RPS4B	P0CX36	261 aa	Known RBP	3.14	□□□□□ -1.91
SNU114	YKL173W	YKL091C	P33324	310 aa	Known RBP	3.14	□□□□□ -1.91
SNU114	YKL173W	NNK1	P36003	928 aa		3.14	□□□□□ -1.91
SNU114	YKL173W	MMM1	P41800	426 aa		3.14	□□□□□ -1.91
SNU114	YKL173W	YOR059C	Q08448	450 aa	Known RBP	3.14	□□□□□ -1.91
SNU114	YKL173W	GRX1	P25373	110 aa	Known RBP	3.13	□□□□□ -1.91
SNU114	YKL173W	GRX4	P32642	244 aa		3.13	□□□□□ -1.91
SNU114	YKL173W	PPG1	P32838	368 aa		3.13	□□□□□ -1.91
SNU114	YKL173W	SWE1	P32944	819 aa		3.13	□□□□□ -1.91
SNU114	YKL173W	YKL069W	P36088	180 aa		3.13	□□□□□ -1.91
SNU114	YKL173W	BAP2	P38084	609 aa		3.13	□□□□□ -1.91
SNU114	YKL173W	ALO1	P54783	526 aa	Known RBP	3.13	□□□□□ -1.91
SNU114	YKL173W	RMD1	Q03441	430 aa		3.13	□□□□□ -1.91
SNU114	YKL173W	IRC20	Q06554	1556 aa		3.13	□□□□□ -1.91
SNU114	YKL173W	CIT3	P43635	486 aa		3.13	□□□□□ -1.91
SNU114	YKL173W	YGR053C	P53234	283 aa		3.13	□□□□□ -1.91
SNU114	YKL173W	SIW14	P53965	281 aa		3.13	□□□□□ -1.91
SNU114	YKL173W	BRE4	Q07660	1125 aa		3.13	□□□□□ -1.91
SNU114	YKL173W	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	3.12	□□□□□ -1.91	RIP-Chip
SNU114	YKL173W	ADD66	P36040	267 aa		3.12	□□□□□ -1.91
SNU114	YKL173W	RRP14	P36080	434 aa	Known RBP	3.12	□□□□□ -1.91
SNU114	YKL173W	XKS1	P42826	600 aa		3.12	□□□□□ -1.91
SNU114	YKL173W	PEX13	P80667	386 aa		3.12	□□□□□ -1.91
SNU114	YKL173W	SPA2	P23201	1466 aa	Known RBP	3.12	□□□□□ -1.91
SNU114	YKL173W	PEP1	P32319	1579 aa		3.12	□□□□□ -1.91
SNU114	YKL173W	CYC7	P00045	113 aa		3.12	□□□□□ -1.91
SNU114	YKL173W	COQ2	P32378	372 aa		3.12	□□□□□ -1.91
SNU114	YKL173W	NUG1	P40010	520 aa	Known RBP	3.12	□□□□□ -1.91
SNU114	YKL173W	MAD1	P40957	749 aa		3.12	□□□□□ -1.91
SNU114	YKL173W	FAA4	P47912	694 aa	Known RBP	3.12	□□□□□ -1.91
SNU114	YKL173W	HUL5	P53119	910 aa		3.12	□□□□□ -1.91
SNU114	YKL173W	NRD1	P53617	575 aa	Known RBP RIP-Chip data	3.12	□□□□□ -1.91	not detected
SNU114	YKL173W	RSA3	Q05942	220 aa	Known RBP	3.12	□□□□□ -1.91
SNU114	YKL173W	ESF1	Q06344	628 aa	Known RBP	3.12	□□□□□ -1.91
SNU114	YKL173W	GCR1	P07261	785 aa		3.11	□□□□□ -1.91
SNU114	YKL173W	SBP1	P10080	294 aa	Known RBP	3.11	□□□□□ -1.91
SNU114	YKL173W	TSR4	P25040	408 aa		3.11	□□□□□ -1.91
SNU114	YKL173W	YAR028W	P39548	234 aa		3.11	□□□□□ -1.91
SNU114	YKL173W	ELA1	P53861	379 aa	Predicted RBP	3.11	□□□□□ -1.91
SNU114	YKL173W	YMR074C	Q04773	145 aa		3.11	□□□□□ -1.91
SNU114	YKL173W	LPX1	Q12405	387 aa	Known RBP	3.11	□□□□□ -1.91
SNU114	YKL173W	STI1	P15705	589 aa	Known RBP RIP-Chip data	3.11	□□□□□ -1.91	not detected
SNU114	YKL173W	NFS1	P25374	497 aa		3.11	□□□□□ -1.91
SNU114	YKL173W	TSA1	P34760	196 aa	Known RBP	3.11	□□□□□ -1.91
SNU114	YKL173W	WHI3	P34761	661 aa	Known RBP	3.11	□□□□□ -1.91
SNU114	YKL173W	TOM20	P35180	183 aa		3.11	□□□□□ -1.91
SNU114	YKL173W	MRPS18	P42847	217 aa		3.11	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 9.7 ms