RNA–Protein interactions for RNA: YHR012W

VPS29, Transcript of Subunit of the membrane-associated retromer complex, yeast

Gene VPS29, Length 849 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS29	YHR012W	PUF6	Q04373	656 aa	Known RBP	5.76	□□□□□ -1.49
VPS29	YHR012W	MRD1	Q06106	887 aa	Known RBP	5.76	□□□□□ -1.49
VPS29	YHR012W	YRR1	Q12172	810 aa		5.76	□□□□□ -1.49
VPS29	YHR012W	HEM1	P09950	548 aa	Predicted RBP	5.75	□□□□□ -1.49
VPS29	YHR012W	SRP40	P32583	406 aa	Predicted RBP	5.75	□□□□□ -1.49
VPS29	YHR012W	PTK2	P47116	818 aa	Known RBP	5.75	□□□□□ -1.49
VPS29	YHR012W	YGR125W	P53273	1036 aa		5.75	□□□□□ -1.49
VPS29	YHR012W	ALD6	P54115	500 aa	Known RBP	5.75	□□□□□ -1.49
VPS29	YHR012W	ALO1	P54783	526 aa	Known RBP	5.75	□□□□□ -1.49
VPS29	YHR012W	TAH18	Q12181	623 aa		5.75	□□□□□ -1.49
VPS29	YHR012W	RAD61	Q99359	647 aa		5.75	□□□□□ -1.49
VPS29	YHR012W	YPR117W	Q06116	2489 aa		5.75	□□□□□ -1.49
VPS29	YHR012W	CDC4	P07834	779 aa		5.74	□□□□□ -1.49
VPS29	YHR012W	ECM21	P38167	1117 aa	Known RBP	5.74	□□□□□ -1.49
VPS29	YHR012W	VPS8	P39702	1274 aa		5.74	□□□□□ -1.49
VPS29	YHR012W	VPS53	P47061	822 aa		5.74	□□□□□ -1.49
VPS29	YHR012W	STR2	P47164	639 aa		5.74	□□□□□ -1.49
VPS29	YHR012W	BRE1	Q07457	700 aa	Known RBP	5.74	□□□□□ -1.49
VPS29	YHR012W	MAM3	Q12296	706 aa		5.74	□□□□□ -1.49
VPS29	YHR012W	TUS1	Q06412	1307 aa		5.74	□□□□□ -1.49
VPS29	YHR012W	RAD18	P10862	487 aa		5.73	□□□□□ -1.49
VPS29	YHR012W	OPI1	P21957	404 aa		5.73	□□□□□ -1.49
VPS29	YHR012W	TIM23	P32897	222 aa		5.73	□□□□□ -1.49
VPS29	YHR012W	KTR3	P38130	404 aa	Predicted RBP	5.73	□□□□□ -1.49
VPS29	YHR012W	KSP1	P38691	1029 aa	Known RBP	5.73	□□□□□ -1.49
VPS29	YHR012W	VID27	P40157	782 aa		5.73	□□□□□ -1.49
VPS29	YHR012W	YMR147W	P40218	223 aa	Known RBP	5.73	□□□□□ -1.49
VPS29	YHR012W	BRE5	P53741	515 aa	Known RBP	5.73	□□□□□ -1.49
VPS29	YHR012W	RMD1	Q03441	430 aa		5.73	□□□□□ -1.49
VPS29	YHR012W	BUL2	Q03758	920 aa	Known RBP	5.73	□□□□□ -1.49
VPS29	YHR012W	KAR5	Q04746	504 aa		5.73	□□□□□ -1.49
VPS29	YHR012W	MSC6	Q08818	692 aa	Known RBP	5.73	□□□□□ -1.49
VPS29	YHR012W	TFB4	Q12004	338 aa		5.73	□□□□□ -1.49
VPS29	YHR012W	KTR1	P27810	393 aa	Known RBP	5.72	□□□□□ -1.49
VPS29	YHR012W	MET22	P32179	357 aa		5.72	□□□□□ -1.49
VPS29	YHR012W	NUD1	P32336	851 aa		5.72	□□□□□ -1.49
VPS29	YHR012W	SPT16	P32558	1035 aa	Known RBP	5.72	□□□□□ -1.49
VPS29	YHR012W	SEC8	P32855	1065 aa		5.72	□□□□□ -1.49
VPS29	YHR012W	DLD1	P32891	587 aa		5.72	□□□□□ -1.49
VPS29	YHR012W	POL32	P47110	350 aa		5.72	□□□□□ -1.49
VPS29	YHR012W	ISM1	P48526	1002 aa		5.72	□□□□□ -1.49
VPS29	YHR012W	DUS4	Q06063	367 aa		5.72	□□□□□ -1.49
VPS29	YHR012W	CLF1	Q12309	687 aa	Predicted RBP	5.72	□□□□□ -1.49
VPS29	YHR012W	TY1B-A	O13527	1196 aa	Known RBP	5.71	□□□□□ -1.5
VPS29	YHR012W	SEC20	P28791	383 aa		5.71	□□□□□ -1.5
VPS29	YHR012W	MCM4	P30665	933 aa	Known RBP	5.71	□□□□□ -1.5
VPS29	YHR012W	UTR4	P32626	227 aa		5.71	□□□□□ -1.5
VPS29	YHR012W	MET1	P36150	593 aa		5.71	□□□□□ -1.5
VPS29	YHR012W	KIC1	P38692	1080 aa		5.71	□□□□□ -1.5
VPS29	YHR012W	PKH3	Q03306	898 aa	Predicted RBP	5.71	□□□□□ -1.5
VPS29	YHR012W	ECM16	Q04217	1267 aa	Known RBP	5.71	□□□□□ -1.5
VPS29	YHR012W	CSC1	Q06538	782 aa		5.71	□□□□□ -1.5
VPS29	YHR012W	LAM4	P38800	1345 aa		5.71	□□□□□ -1.5
VPS29	YHR012W	COQ1	P18900	473 aa		5.7	□□□□□ -1.5
VPS29	YHR012W	CHS3	P29465	1165 aa		5.7	□□□□□ -1.5
VPS29	YHR012W	GPT2	P36148	743 aa		5.7	□□□□□ -1.5
VPS29	YHR012W	VPS45	P38932	577 aa		5.7	□□□□□ -1.5
VPS29	YHR012W	STM1	P39015	273 aa	Known RBP	5.7	□□□□□ -1.5
VPS29	YHR012W	NOC2	P39744	710 aa	Known RBP	5.7	□□□□□ -1.5
VPS29	YHR012W	AFG3	P39925	761 aa		5.7	□□□□□ -1.5
VPS29	YHR012W	LSB1	P53281	241 aa		5.7	□□□□□ -1.5
VPS29	YHR012W	FOL1	P53848	824 aa		5.7	□□□□□ -1.5
VPS29	YHR012W	RPS15	Q01855	142 aa	Known RBP	5.7	□□□□□ -1.5
VPS29	YHR012W	ISA1	Q07821	250 aa	Predicted RBP	5.7	□□□□□ -1.5
VPS29	YHR012W	SSF2	Q12153	453 aa	Predicted RBP	5.7	□□□□□ -1.5
VPS29	YHR012W	ECM29	P38737	1868 aa		5.7	□□□□□ -1.5
VPS29	YHR012W	TFC4	P33339	1025 aa		5.69	□□□□□ -1.5
VPS29	YHR012W	RFC1	P38630	861 aa	Known RBP	5.69	□□□□□ -1.5
VPS29	YHR012W	SLD5	Q03406	294 aa		5.69	□□□□□ -1.5
VPS29	YHR012W	AHC1	Q12433	566 aa		5.69	□□□□□ -1.5
VPS29	YHR012W	RTP1	Q12751	981 aa		5.69	□□□□□ -1.5
VPS29	YHR012W	PDC1	P06169	563 aa	Known RBP	5.68	□□□□□ -1.5
VPS29	YHR012W	CDC16	P09798	840 aa		5.68	□□□□□ -1.5
VPS29	YHR012W	SAM2	P19358	384 aa	Known RBP	5.68	□□□□□ -1.5
VPS29	YHR012W	BCS1	P32839	456 aa		5.68	□□□□□ -1.5
VPS29	YHR012W	PHO88	P38264	188 aa	Predicted RBP	5.68	□□□□□ -1.5
VPS29	YHR012W	YHL050C	P38721	697 aa		5.68	□□□□□ -1.5
VPS29	YHR012W	SKP2	P42843	763 aa		5.68	□□□□□ -1.5
VPS29	YHR012W	ALG2	P43636	503 aa		5.68	□□□□□ -1.5
VPS29	YHR012W	PIB2	P53191	635 aa		5.68	□□□□□ -1.5
VPS29	YHR012W	MRPS35	P53292	345 aa		5.68	□□□□□ -1.5
VPS29	YHR012W	UFD2	P54860	961 aa		5.68	□□□□□ -1.5
VPS29	YHR012W	VPS30	Q02948	557 aa		5.68	□□□□□ -1.5
VPS29	YHR012W	YDR444W	Q04093	687 aa		5.68	□□□□□ -1.5
VPS29	YHR012W	SPH1	Q06160	661 aa		5.68	□□□□□ -1.5
VPS29	YHR012W	NUC1	P08466	329 aa		5.67	□□□□□ -1.5
VPS29	YHR012W	SAM1	P10659	382 aa	Known RBP	5.67	□□□□□ -1.5
VPS29	YHR012W	POX1	P13711	748 aa		5.67	□□□□□ -1.5
VPS29	YHR012W	SNA3	P14359	133 aa		5.67	□□□□□ -1.5
VPS29	YHR012W	TPM1	P17536	199 aa	Known RBP	5.67	□□□□□ -1.5
VPS29	YHR012W	ACE2	P21192	770 aa		5.67	□□□□□ -1.5
VPS29	YHR012W	RPL8B	P29453	256 aa	Known RBP	5.67	□□□□□ -1.5
VPS29	YHR012W	IRE1	P32361	1115 aa		5.67	□□□□□ -1.5
VPS29	YHR012W	TGL1	P34163	548 aa		5.67	□□□□□ -1.5
VPS29	YHR012W	MCR1	P36060	302 aa	Known RBP	5.67	□□□□□ -1.5
VPS29	YHR012W	GRS1	P38088	690 aa	Known RBP	5.67	□□□□□ -1.5
VPS29	YHR012W	MCM6	P53091	1017 aa	Known RBP	5.67	□□□□□ -1.5
VPS29	YHR012W	GUD1	Q07729	489 aa		5.67	□□□□□ -1.5
VPS29	YHR012W	TRM11	Q12463	433 aa		5.67	□□□□□ -1.5
VPS29	YHR012W	TKL1	P23254	680 aa	Known RBP	5.66	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 149.5 ms