RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W PCH2P38126 564 aa8.86□□□□□ -0.99
UFD1YGR048W ISW1P38144 1129 aa8.86□□□□□ -0.99
UFD1YGR048W YAP3P38749 330 aa8.86□□□□□ -0.99
UFD1YGR048W RRM3P38766 723 aa8.86□□□□□ -0.99
UFD1YGR048W PET100P38958 111 aa8.86□□□□□ -0.99
UFD1YGR048W SEC9P40357 651 aa8.86□□□□□ -0.99
UFD1YGR048W ALD4P46367 519 aaKnown RBP8.86□□□□□ -0.99
UFD1YGR048W YJR079WP47126 109 aa8.86□□□□□ -0.99
UFD1YGR048W SHE4P51534 789 aa8.86□□□□□ -0.99
UFD1YGR048W ADE12P80210 433 aaKnown RBP8.86□□□□□ -0.99
UFD1YGR048W THR4P16120 514 aaKnown RBP8.85□□□□□ -0.99
UFD1YGR048W CDC10P25342 322 aaKnown RBP8.85□□□□□ -0.99
UFD1YGR048W EFB1P32471 206 aaKnown RBP8.85□□□□□ -0.99
UFD1YGR048W RAD5P32849 1169 aaPredicted RBP8.85□□□□□ -0.99
UFD1YGR048W LHS1P36016 881 aa8.85□□□□□ -0.99
UFD1YGR048W NAB3P38996 802 aaKnown RBP RIP-Chip data8.85□□□□□ -0.99not detected
UFD1YGR048W CAJ1P39101 391 aa8.85□□□□□ -0.99
UFD1YGR048W SEC5P89102 971 aa8.85□□□□□ -0.99
UFD1YGR048W ATG23Q06671 453 aa8.85□□□□□ -0.99
UFD1YGR048W TSR1Q07381 788 aaKnown RBP8.85□□□□□ -0.99
UFD1YGR048W CIR2Q08822 631 aa8.85□□□□□ -0.99
UFD1YGR048W NTE1Q04958 1679 aa8.85□□□□□ -0.99
UFD1YGR048W PDR18P53756 1333 aa8.84□□□□□ -0.99
UFD1YGR048W GCD2P12754 651 aaPredicted RBP8.84□□□□□ -0.99
UFD1YGR048W SWC3P31376 625 aa8.84□□□□□ -0.99
UFD1YGR048W TIF3P34167 436 aaKnown RBP8.84□□□□□ -0.99
UFD1YGR048W RPC37P36121 282 aa8.84□□□□□ -0.99
UFD1YGR048W LIN1P38852 340 aaPredicted RBP8.84□□□□□ -0.99
UFD1YGR048W VPS53P47061 822 aa8.84□□□□□ -0.99
UFD1YGR048W SPO1P53541 631 aa8.84□□□□□ -0.99
UFD1YGR048W MFM1Q02783 413 aa8.84□□□□□ -0.99
UFD1YGR048W WAR1Q03631 944 aa8.84□□□□□ -0.99
UFD1YGR048W KRE28Q04431 385 aa8.84□□□□□ -0.99
UFD1YGR048W FAR8Q05040 523 aa8.84□□□□□ -0.99
UFD1YGR048W NOC3Q07896 663 aaPredicted RBP8.84□□□□□ -0.99
UFD1YGR048W APL4Q12028 832 aa8.84□□□□□ -0.99
UFD1YGR048W GPA1P08539 472 aa8.83□□□□□ -1
UFD1YGR048W GCD6P32501 712 aaKnown RBP8.83□□□□□ -1
UFD1YGR048W NFU1P32860 256 aa8.83□□□□□ -1
UFD1YGR048W SEC66P33754 206 aa8.83□□□□□ -1
UFD1YGR048W BEM4P39011 633 aa8.83□□□□□ -1
UFD1YGR048W VID28P40547 921 aa8.83□□□□□ -1
UFD1YGR048W TRS85P46944 698 aa8.83□□□□□ -1
UFD1YGR048W RCM1P53972 490 aa8.83□□□□□ -1
UFD1YGR048W CHS5Q12114 671 aaKnown RBP8.83□□□□□ -1
UFD1YGR048W LSO1Q3E827 93 aa8.83□□□□□ -1
UFD1YGR048W SRL3P36167 246 aa8.82□□□□□ -1
UFD1YGR048W YIL001WP40560 513 aa8.82□□□□□ -1
UFD1YGR048W CLA4P48562 842 aa8.82□□□□□ -1
UFD1YGR048W HUL5P53119 910 aa8.82□□□□□ -1
UFD1YGR048W CAF130P53280 1122 aaPredicted RBP8.82□□□□□ -1
UFD1YGR048W BET4Q00618 327 aa8.82□□□□□ -1
UFD1YGR048W LAM6Q08001 693 aa8.82□□□□□ -1
UFD1YGR048W NAT1P12945 854 aaKnown RBP8.81□□□□□ -1
UFD1YGR048W TAL1P15019 335 aaKnown RBP8.81□□□□□ -1
UFD1YGR048W TUP1P16649 713 aa8.81□□□□□ -1
UFD1YGR048W KCC4P25389 1037 aa8.81□□□□□ -1
UFD1YGR048W GSY2P27472 705 aa8.81□□□□□ -1
UFD1YGR048W ECM4P36156 370 aa8.81□□□□□ -1
UFD1YGR048W MRX1P40050 688 aa8.81□□□□□ -1
UFD1YGR048W FYV10P40492 516 aa8.81□□□□□ -1
UFD1YGR048W PXA1P41909 870 aa8.81□□□□□ -1
UFD1YGR048W GCN20P43535 752 aaKnown RBP8.81□□□□□ -1
UFD1YGR048W SUM1P46676 1062 aa8.81□□□□□ -1
UFD1YGR048W ORM1P53224 222 aa8.81□□□□□ -1
UFD1YGR048W VPS75P53853 264 aa8.81□□□□□ -1
UFD1YGR048W YKU80Q04437 629 aa8.81□□□□□ -1
UFD1YGR048W TYW1Q08960 810 aaKnown RBP8.81□□□□□ -1
UFD1YGR048W RPO41P13433 1351 aaKnown RBP8.81□□□□□ -1
UFD1YGR048W ADE6P38972 1358 aaKnown RBP8.81□□□□□ -1
UFD1YGR048W ARG1P22768 420 aa8.8□□□□□ -1
UFD1YGR048W UBP1P25037 809 aa8.8□□□□□ -1
UFD1YGR048W MET4P32389 672 aa8.8□□□□□ -1
UFD1YGR048W YER130CP39959 443 aa8.8□□□□□ -1
UFD1YGR048W YPT11P48559 417 aa8.8□□□□□ -1
UFD1YGR048W ALF1P53904 254 aa8.8□□□□□ -1
UFD1YGR048W TIM11P81449 96 aaPredicted RBP8.8□□□□□ -1
UFD1YGR048W TAF8Q03750 510 aa8.8□□□□□ -1
UFD1YGR048W MMR1Q06324 491 aa8.8□□□□□ -1
UFD1YGR048W IMH1Q06704 911 aaKnown RBP8.8□□□□□ -1
UFD1YGR048W OSH2Q12451 1283 aa8.8□□□□□ -1
UFD1YGR048W RDS1P25611 832 aa8.79□□□□□ -1
UFD1YGR048W CDC48P25694 835 aaKnown RBP8.79□□□□□ -1
UFD1YGR048W CDC15P27636 974 aa8.79□□□□□ -1
UFD1YGR048W ERC1P38767 581 aa8.79□□□□□ -1
UFD1YGR048W PIH1P38768 344 aa8.79□□□□□ -1
UFD1YGR048W AIM9P40053 627 aaKnown RBP8.79□□□□□ -1
UFD1YGR048W AIR1P40507 360 aaKnown RBP8.79□□□□□ -1
UFD1YGR048W CCM1P48237 864 aaPredicted RBP8.79□□□□□ -1
UFD1YGR048W CSI1Q04368 295 aa8.79□□□□□ -1
UFD1YGR048W RAD1P06777 1100 aa8.78□□□□□ -1
UFD1YGR048W YMR085WP0CF18 432 aa8.78□□□□□ -1
UFD1YGR048W TPM1P17536 199 aaKnown RBP8.78□□□□□ -1
UFD1YGR048W ESS1P22696 170 aa8.78□□□□□ -1
UFD1YGR048W SRP40P32583 406 aaPredicted RBP8.78□□□□□ -1
UFD1YGR048W BUD16P39988 312 aa8.78□□□□□ -1
UFD1YGR048W MIC19P43594 170 aa8.78□□□□□ -1
UFD1YGR048W HST2P53686 357 aa8.78□□□□□ -1
UFD1YGR048W TFB2Q02939 513 aa8.78□□□□□ -1
UFD1YGR048W TAP42Q04372 366 aa8.78□□□□□ -1
Retrieved 100 of 5,963 RNA–protein pairs in 22.7 ms