RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	MSC7	P38694	644 aa		6.48	□□□□□ -1.37
CAF16	YFL028C	REC8	Q12188	680 aa		6.48	□□□□□ -1.37
CAF16	YFL028C	TY1A-BL	Q12266	440 aa		6.48	□□□□□ -1.37
CAF16	YFL028C	VTH1	P40438	1549 aa		6.48	□□□□□ -1.37
CAF16	YFL028C	VTH2	P40890	1549 aa		6.48	□□□□□ -1.37
CAF16	YFL028C	TRM732	Q03496	1420 aa		6.48	□□□□□ -1.37
CAF16	YFL028C	MRP10	O75012	95 aa		6.47	□□□□□ -1.37
CAF16	YFL028C	DED1	P06634	604 aa	Known RBP	6.47	□□□□□ -1.37
CAF16	YFL028C	TAF13	P11747	167 aa		6.47	□□□□□ -1.37
CAF16	YFL028C	DIT1	P21623	536 aa		6.47	□□□□□ -1.37
CAF16	YFL028C	ABD1	P32783	436 aa	Predicted RBP	6.47	□□□□□ -1.37
CAF16	YFL028C	YKL077W	P36081	392 aa		6.47	□□□□□ -1.37
CAF16	YFL028C	YBR184W	P38299	523 aa		6.47	□□□□□ -1.37
CAF16	YFL028C	FPR3	P38911	411 aa	Known RBP	6.47	□□□□□ -1.37
CAF16	YFL028C	NUP82	P40368	713 aa		6.47	□□□□□ -1.37
CAF16	YFL028C	FET4	P40988	552 aa		6.47	□□□□□ -1.37
CAF16	YFL028C	LSB6	P42951	607 aa		6.47	□□□□□ -1.37
CAF16	YFL028C	BIO5	P53744	561 aa	Known RBP	6.47	□□□□□ -1.37
CAF16	YFL028C	FAR11	P53917	953 aa		6.47	□□□□□ -1.37
CAF16	YFL028C	SIW14	P53965	281 aa		6.47	□□□□□ -1.37
CAF16	YFL028C	GCR2	Q01722	534 aa		6.47	□□□□□ -1.37
CAF16	YFL028C	SPO20	Q04359	397 aa		6.47	□□□□□ -1.37
CAF16	YFL028C	ESC2	Q06340	456 aa		6.47	□□□□□ -1.37
CAF16	YFL028C	TSC11	P40061	1430 aa		6.47	□□□□□ -1.37
CAF16	YFL028C	FPS1	P23900	669 aa		6.46	□□□□□ -1.38
CAF16	YFL028C	TIM23	P32897	222 aa		6.46	□□□□□ -1.38
CAF16	YFL028C	RER2	P35196	286 aa		6.46	□□□□□ -1.38
CAF16	YFL028C	EXO5	P38289	585 aa		6.46	□□□□□ -1.38
CAF16	YFL028C	HXT13	P39924	564 aa		6.46	□□□□□ -1.38
CAF16	YFL028C	PRK1	P40494	810 aa		6.46	□□□□□ -1.38
CAF16	YFL028C	HXT17	P53631	564 aa		6.46	□□□□□ -1.38
CAF16	YFL028C	HXT15	P54854	567 aa		6.46	□□□□□ -1.38
CAF16	YFL028C	ROD1	Q02805	837 aa		6.46	□□□□□ -1.38
CAF16	YFL028C	NTE1	Q04958	1679 aa		6.45	□□□□□ -1.38
CAF16	YFL028C	MET6	P05694	767 aa	Known RBP	6.45	□□□□□ -1.38
CAF16	YFL028C	HVG1	P0CE11	249 aa		6.45	□□□□□ -1.38
CAF16	YFL028C	LYP1	P32487	611 aa		6.45	□□□□□ -1.38
CAF16	YFL028C	AMN1	P38285	549 aa	Predicted RBP	6.45	□□□□□ -1.38
CAF16	YFL028C	YHR020W	P38708	688 aa	Known RBP	6.45	□□□□□ -1.38
CAF16	YFL028C	YGR125W	P53273	1036 aa		6.45	□□□□□ -1.38
CAF16	YFL028C	YNR065C	P53751	1116 aa		6.45	□□□□□ -1.38
CAF16	YFL028C	CUZ1	P53899	274 aa		6.45	□□□□□ -1.38
CAF16	YFL028C	YLR225C	Q05948	407 aa	Known RBP	6.45	□□□□□ -1.38
CAF16	YFL028C	PPM2	Q08282	695 aa		6.45	□□□□□ -1.38
CAF16	YFL028C	FLC1	Q08967	793 aa		6.45	□□□□□ -1.38
CAF16	YFL028C	OSH2	Q12451	1283 aa		6.45	□□□□□ -1.38
CAF16	YFL028C	HTS1	P07263	546 aa	Known RBP	6.44	□□□□□ -1.38
CAF16	YFL028C	TY1A-LR4	P0C2I8	440 aa	Known RBP	6.44	□□□□□ -1.38
CAF16	YFL028C	TY1A-DR6	P0CX70	440 aa		6.44	□□□□□ -1.38
CAF16	YFL028C	TY1A-ER1	P0CX71	440 aa		6.44	□□□□□ -1.38
CAF16	YFL028C	TY1A-LR2	P0CX72	440 aa		6.44	□□□□□ -1.38
CAF16	YFL028C	TY1A-PL	P0CX73	440 aa		6.44	□□□□□ -1.38
CAF16	YFL028C	TY1A-JR1	P0CX74	440 aa		6.44	□□□□□ -1.38
CAF16	YFL028C	TY1A-LR3	P0CX75	440 aa		6.44	□□□□□ -1.38
CAF16	YFL028C	TY1A-ML2	P0CX76	440 aa		6.44	□□□□□ -1.38
CAF16	YFL028C	STE5	P32917	917 aa		6.44	□□□□□ -1.38
CAF16	YFL028C	RDH54	P38086	958 aa		6.44	□□□□□ -1.38
CAF16	YFL028C	SEA4	P38164	1038 aa		6.44	□□□□□ -1.38
CAF16	YFL028C	NEO1	P40527	1151 aa		6.44	□□□□□ -1.38
CAF16	YFL028C	KRI1	P42846	591 aa	Known RBP	6.44	□□□□□ -1.38
CAF16	YFL028C	ROG3	P43602	733 aa		6.44	□□□□□ -1.38
CAF16	YFL028C	SPO75	Q07798	868 aa		6.44	□□□□□ -1.38
CAF16	YFL028C	TY1A-GR1	Q12085	440 aa		6.44	□□□□□ -1.38
CAF16	YFL028C	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	6.44	□□□□□ -1.38
CAF16	YFL028C	TY1A-OL	Q92392	440 aa	Known RBP	6.44	□□□□□ -1.38
CAF16	YFL028C	RPO21	P04050	1733 aa	Known RBP	6.43	□□□□□ -1.38
CAF16	YFL028C	VMA4	P22203	233 aa	Known RBP	6.43	□□□□□ -1.38
CAF16	YFL028C	AGP1	P25376	633 aa		6.43	□□□□□ -1.38
CAF16	YFL028C	MOT2	P34909	587 aa	Known RBP	6.43	□□□□□ -1.38
CAF16	YFL028C	RSP5	P39940	809 aa	Known RBP	6.43	□□□□□ -1.38
CAF16	YFL028C	ADE12	P80210	433 aa	Known RBP	6.43	□□□□□ -1.38
CAF16	YFL028C	SOG2	Q08817	791 aa		6.43	□□□□□ -1.38
CAF16	YFL028C	NUP159	P40477	1460 aa		6.42	□□□□□ -1.38
CAF16	YFL028C	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	6.42	□□□□□ -1.38	not detected
CAF16	YFL028C	PHO8	P11491	566 aa		6.42	□□□□□ -1.38
CAF16	YFL028C	INO1	P11986	533 aa		6.42	□□□□□ -1.38
CAF16	YFL028C	SBA1	P28707	216 aa	Known RBP	6.42	□□□□□ -1.38
CAF16	YFL028C	VBA5	P36172	582 aa		6.42	□□□□□ -1.38
CAF16	YFL028C	TY1A-DR2	Q03964	440 aa	Known RBP	6.42	□□□□□ -1.38
CAF16	YFL028C	TY1A-MR1	Q04215	440 aa		6.42	□□□□□ -1.38
CAF16	YFL028C	POB3	Q04636	552 aa	Known RBP	6.42	□□□□□ -1.38
CAF16	YFL028C	EST2	Q06163	884 aa		6.42	□□□□□ -1.38
CAF16	YFL028C	YRF1-1	P0CX20	1796 aa		6.41	□□□□□ -1.38
CAF16	YFL028C	YRF1-5	P0CX21	1796 aa		6.41	□□□□□ -1.38
CAF16	YFL028C	YRF1-8	P0CX22	1796 aa		6.41	□□□□□ -1.38
CAF16	YFL028C	SNQ2	P32568	1501 aa	Known RBP	6.41	□□□□□ -1.38
CAF16	YFL028C	HSP60	P19882	572 aa	Known RBP	6.41	□□□□□ -1.38
CAF16	YFL028C	MKK2	P32491	506 aa		6.41	□□□□□ -1.38
CAF16	YFL028C	MRP8	P35719	219 aa		6.41	□□□□□ -1.38
CAF16	YFL028C	MNN1	P39106	762 aa		6.41	□□□□□ -1.38
CAF16	YFL028C	CHZ1	P40019	153 aa	Predicted RBP	6.41	□□□□□ -1.38
CAF16	YFL028C	MTR4	P47047	1073 aa	Known RBP	6.41	□□□□□ -1.38
CAF16	YFL028C	ENT3	P47160	408 aa		6.41	□□□□□ -1.38
CAF16	YFL028C	UTP22	P53254	1237 aa	Predicted RBP	6.41	□□□□□ -1.38
CAF16	YFL028C	HAS1	Q03532	505 aa	Known RBP	6.41	□□□□□ -1.38
CAF16	YFL028C	SHE9	Q04172	456 aa		6.41	□□□□□ -1.38
CAF16	YFL028C	GAL11	P19659	1081 aa		6.4	□□□□□ -1.38
CAF16	YFL028C	ARE1	P25628	610 aa		6.4	□□□□□ -1.38
CAF16	YFL028C	RPL8B	P29453	256 aa	Known RBP	6.4	□□□□□ -1.38
CAF16	YFL028C	NEM1	P38757	446 aa		6.4	□□□□□ -1.38

Retrieved 100 of 5,963 RNA–protein pairs in 15.9 ms