RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	CCT5	P40413	562 aa	Known RBP	12.18	□□□□□ -0.46
VPS60	YDR486C	FAR11	P53917	953 aa		12.18	□□□□□ -0.46
VPS60	YDR486C	SMD2	Q06217	110 aa	Known RBP	12.18	□□□□□ -0.46
VPS60	YDR486C	CSC1	Q06538	782 aa		12.18	□□□□□ -0.46
VPS60	YDR486C	APC11	Q12157	165 aa		12.18	□□□□□ -0.46
VPS60	YDR486C	AIM44	Q99299	758 aa		12.18	□□□□□ -0.46
VPS60	YDR486C	HXK1	P04806	485 aa	Known RBP	12.17	□□□□□ -0.46
VPS60	YDR486C	HVG1	P0CE11	249 aa		12.17	□□□□□ -0.46
VPS60	YDR486C	RGP1	P16664	663 aa		12.17	□□□□□ -0.46
VPS60	YDR486C	PER1	P25625	357 aa		12.17	□□□□□ -0.46
VPS60	YDR486C	ARL1	P38116	183 aa	Known RBP	12.17	□□□□□ -0.46
VPS60	YDR486C	UBX5	Q06682	500 aa		12.17	□□□□□ -0.46
VPS60	YDR486C	PTC5	Q12511	572 aa		12.17	□□□□□ -0.46
VPS60	YDR486C	URA1	P28272	314 aa	Predicted RBP	12.16	□□□□□ -0.46
VPS60	YDR486C	RVS167	P39743	482 aa	Known RBP	12.16	□□□□□ -0.46
VPS60	YDR486C	VAB2	P40003	282 aa		12.16	□□□□□ -0.46
VPS60	YDR486C	FMS1	P50264	508 aa		12.16	□□□□□ -0.46
VPS60	YDR486C	RET3	P53600	189 aa		12.16	□□□□□ -0.46
VPS60	YDR486C	NBL1	Q3E7Y6	73 aa		12.16	□□□□□ -0.46
VPS60	YDR486C	SAS3	P34218	831 aa		12.15	□□□□□ -0.46
VPS60	YDR486C	RFT1	P38206	574 aa	Predicted RBP	12.15	□□□□□ -0.46
VPS60	YDR486C	BSD2	P38356	321 aa		12.15	□□□□□ -0.46
VPS60	YDR486C	PAN5	P38787	379 aa		12.15	□□□□□ -0.46
VPS60	YDR486C	NET1	P47035	1189 aa		12.15	□□□□□ -0.46
VPS60	YDR486C	EIS1	Q05050	843 aa	Known RBP	12.15	□□□□□ -0.46
VPS60	YDR486C	TIP41	Q12199	356 aa		12.15	□□□□□ -0.46
VPS60	YDR486C	DDP1	Q99321	188 aa	Known RBP	12.15	□□□□□ -0.46
VPS60	YDR486C	RSM25	P40496	264 aa		12.14	□□□□□ -0.47
VPS60	YDR486C	BNI5	P53890	448 aa	Known RBP	12.14	□□□□□ -0.47
VPS60	YDR486C	KRE33	P53914	1056 aa	Known RBP	12.14	□□□□□ -0.47
VPS60	YDR486C	TRS120	Q04183	1289 aa		12.14	□□□□□ -0.47
VPS60	YDR486C	TMA64	Q04600	565 aa	Known RBP	12.14	□□□□□ -0.47
VPS60	YDR486C	YOR296W	Q08748	1289 aa		12.14	□□□□□ -0.47
VPS60	YDR486C	THR4	P16120	514 aa	Known RBP	12.13	□□□□□ -0.47
VPS60	YDR486C	ALG1	P16661	449 aa		12.13	□□□□□ -0.47
VPS60	YDR486C	PWP2	P25635	923 aa	Known RBP	12.13	□□□□□ -0.47
VPS60	YDR486C	MCM4	P30665	933 aa	Known RBP	12.13	□□□□□ -0.47
VPS60	YDR486C	RPN12	P32496	274 aa		12.13	□□□□□ -0.47
VPS60	YDR486C	TGL1	P34163	548 aa		12.13	□□□□□ -0.47
VPS60	YDR486C	MCD4	P36051	919 aa		12.13	□□□□□ -0.47
VPS60	YDR486C	DID4	P36108	232 aa		12.13	□□□□□ -0.47
VPS60	YDR486C	STT3	P39007	718 aa	Known RBP	12.13	□□□□□ -0.47
VPS60	YDR486C	CIT3	P43635	486 aa		12.13	□□□□□ -0.47
VPS60	YDR486C	DSE4	P53753	1117 aa		12.13	□□□□□ -0.47
VPS60	YDR486C	ALD6	P54115	500 aa	Known RBP	12.13	□□□□□ -0.47
VPS60	YDR486C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	12.12	□□□□□ -0.47	not detected
VPS60	YDR486C	SAM1	P10659	382 aa	Known RBP	12.12	□□□□□ -0.47
VPS60	YDR486C	SUL1	P38359	859 aa		12.12	□□□□□ -0.47
VPS60	YDR486C	RBA50	Q04418	439 aa		12.12	□□□□□ -0.47
VPS60	YDR486C	OXR1	Q08952	273 aa		12.12	□□□□□ -0.47
VPS60	YDR486C	MCM3	P24279	971 aa	Known RBP	12.11	□□□□□ -0.47
VPS60	YDR486C	UGA4	P32837	571 aa		12.11	□□□□□ -0.47
VPS60	YDR486C	ETP1	P38748	585 aa	Known RBP	12.11	□□□□□ -0.47
VPS60	YDR486C	CSM3	Q04659	317 aa		12.11	□□□□□ -0.47
VPS60	YDR486C	CST9	Q06032	482 aa		12.11	□□□□□ -0.47
VPS60	YDR486C	SPH1	Q06160	661 aa		12.11	□□□□□ -0.47
VPS60	YDR486C	MMR1	Q06324	491 aa		12.11	□□□□□ -0.47
VPS60	YDR486C	SLK19	Q08581	821 aa	Known RBP	12.11	□□□□□ -0.47
VPS60	YDR486C	CFT2	Q12102	859 aa	Predicted RBP	12.11	□□□□□ -0.47
VPS60	YDR486C	IXR1	P33417	597 aa		12.1	□□□□□ -0.47
VPS60	YDR486C	YPT11	P48559	417 aa		12.1	□□□□□ -0.47
VPS60	YDR486C	CUE3	P53137	624 aa	Known RBP	12.1	□□□□□ -0.47
VPS60	YDR486C	YGR273C	P53329	174 aa		12.1	□□□□□ -0.47
VPS60	YDR486C	RTC4	P53850	401 aa		12.1	□□□□□ -0.47
VPS60	YDR486C	JIP4	Q03361	876 aa		12.1	□□□□□ -0.47
VPS60	YDR486C	AIM33	Q04516	312 aa		12.1	□□□□□ -0.47
VPS60	YDR486C	ETT1	Q08421	412 aa	Known RBP	12.1	□□□□□ -0.47
VPS60	YDR486C	GPA1	P08539	472 aa		12.09	□□□□□ -0.47
VPS60	YDR486C	VMA2	P16140	517 aa	Known RBP	12.09	□□□□□ -0.47
VPS60	YDR486C	SRO9	P25567	434 aa	Known RBP	12.09	□□□□□ -0.47
VPS60	YDR486C	UTR4	P32626	227 aa		12.09	□□□□□ -0.47
VPS60	YDR486C	APE3	P37302	537 aa	Known RBP	12.09	□□□□□ -0.47
VPS60	YDR486C	YER130C	P39959	443 aa		12.09	□□□□□ -0.47
VPS60	YDR486C	ATG32	P40458	529 aa		12.09	□□□□□ -0.47
VPS60	YDR486C	YGR153W	P48238	217 aa		12.09	□□□□□ -0.47
VPS60	YDR486C	LIF1	P53150	421 aa		12.09	□□□□□ -0.47
VPS60	YDR486C	TOM1	Q03280	3268 aa		12.08	□□□□□ -0.47
VPS60	YDR486C	TUF1	P02992	437 aa	Known RBP	12.08	□□□□□ -0.48
VPS60	YDR486C	KNS1	P32350	737 aa	Predicted RBP	12.08	□□□□□ -0.48
VPS60	YDR486C	ASH1	P34233	588 aa		12.08	□□□□□ -0.48
VPS60	YDR486C	NPR3	P38742	1146 aa		12.08	□□□□□ -0.48
VPS60	YDR486C	ORC6	P38826	435 aa		12.08	□□□□□ -0.48
VPS60	YDR486C	GAA1	P39012	614 aa		12.08	□□□□□ -0.48
VPS60	YDR486C	GUD1	Q07729	489 aa		12.08	□□□□□ -0.48
VPS60	YDR486C	TRS33	Q99394	268 aa		12.08	□□□□□ -0.48
VPS60	YDR486C	CLC1	P17891	233 aa		12.07	□□□□□ -0.48
VPS60	YDR486C	SHP1	P34223	423 aa		12.07	□□□□□ -0.48
VPS60	YDR486C	YKT6	P36015	200 aa	Known RBP	12.07	□□□□□ -0.48
VPS60	YDR486C	YKR018C	P36114	725 aa		12.07	□□□□□ -0.48
VPS60	YDR486C	GPB2	P39717	880 aa		12.07	□□□□□ -0.48
VPS60	YDR486C	DAK2	P43550	591 aa		12.07	□□□□□ -0.48
VPS60	YDR486C	SDA1	P53313	767 aa	Known RBP	12.07	□□□□□ -0.48
VPS60	YDR486C	OYE2	Q03558	400 aa	Known RBP	12.07	□□□□□ -0.48
VPS60	YDR486C	VMS1	Q04311	632 aa	Known RBP	12.07	□□□□□ -0.48
VPS60	YDR486C	DUS3	Q06053	668 aa	Known RBP	12.07	□□□□□ -0.48
VPS60	YDR486C	YLR326W	Q06170	240 aa	Known RBP	12.07	□□□□□ -0.48
VPS60	YDR486C	RKM4	Q12504	494 aa		12.07	□□□□□ -0.48
VPS60	YDR486C	ARP6	Q12509	438 aa		12.07	□□□□□ -0.48
VPS60	YDR486C	HIS4	P00815	799 aa	Known RBP	12.06	□□□□□ -0.48
VPS60	YDR486C	CDC60	P26637	1090 aa	Known RBP	12.06	□□□□□ -0.48

Retrieved 100 of 5,963 RNA–protein pairs in 31.5 ms