RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 AGLP35573 1532 aa16.03■□□□□ 0.16
CCDC88A-214ENST00000621814 MSH6P52701 1360 aa16.03■□□□□ 0.16
CCDC88A-214ENST00000621814 INTS3Q68E01 1043 aaKnown RBP16.03■□□□□ 0.16
CCDC88A-214ENST00000621814 CEP85Q6P2H3 762 aa16.03■□□□□ 0.16
CCDC88A-214ENST00000621814 EID1Q9Y6B2 187 aa16.03■□□□□ 0.16
CCDC88A-214ENST00000621814 TSHZ3Q63HK5 1081 aa16.03■□□□□ 0.16
CCDC88A-214ENST00000621814 XRCC6P12956 609 aaKnown RBP eCLIP16.02■□□□□ 0.16
CCDC88A-214ENST00000621814 NRXN3Q9Y4C0 1643 aa16.02■□□□□ 0.15
CCDC88A-214ENST00000621814 NLRP6P59044 892 aa16.02■□□□□ 0.15
CCDC88A-214ENST00000621814 ANKRD44Q8N8A2 993 aa16.02■□□□□ 0.15
CCDC88A-214ENST00000621814 SNX21Q969T3 373 aa16.02■□□□□ 0.15
CCDC88A-214ENST00000621814 RBM33Q96EV2 1170 aaKnown RBP16.02■□□□□ 0.15
CCDC88A-214ENST00000621814 K7ELQ4 463 aaPredicted RBP16.01■□□□□ 0.15
CCDC88A-214ENST00000621814 TTC22Q5TAA0 569 aa16.01■□□□□ 0.15
CCDC88A-214ENST00000621814 GAS2L2Q8NHY3 880 aa16.01■□□□□ 0.15
CCDC88A-214ENST00000621814 SIRT1Q96EB6 747 aa16.01■□□□□ 0.15
CCDC88A-214ENST00000621814 HAP1P54257 671 aaPredicted RBP16■□□□□ 0.15
CCDC88A-214ENST00000621814 EYA1Q99502 592 aa16■□□□□ 0.15
CCDC88A-214ENST00000621814 EXOC6BQ9Y2D4 811 aa16■□□□□ 0.15
CCDC88A-214ENST00000621814 PLEKHG3A1L390 1219 aa16■□□□□ 0.15
CCDC88A-214ENST00000621814 SETD1AO15047 1707 aaKnown RBP15.99■□□□□ 0.15
CCDC88A-214ENST00000621814 DDX11L8A8MPP1 907 aa15.99■□□□□ 0.15
CCDC88A-214ENST00000621814 SDSP20132 328 aa15.99■□□□□ 0.15
CCDC88A-214ENST00000621814 RPAP2Q8IXW5 612 aaPredicted RBP15.99■□□□□ 0.15
CCDC88A-214ENST00000621814 EIF5BO60841 1220 aaKnown RBP15.99■□□□□ 0.15
CCDC88A-214ENST00000621814 SSFA2P28290 1259 aa15.98■□□□□ 0.15
CCDC88A-214ENST00000621814 FKBP5Q13451 457 aaPredicted RBP15.98■□□□□ 0.15
CCDC88A-214ENST00000621814 USHBP1Q8N6Y0 703 aa15.98■□□□□ 0.15
CCDC88A-214ENST00000621814 DLG5Q8TDM6 1919 aa15.98■□□□□ 0.15
CCDC88A-214ENST00000621814 USP6P35125 1406 aa15.98■□□□□ 0.15
CCDC88A-214ENST00000621814 GBP4Q96PP9 640 aa15.98■□□□□ 0.15
CCDC88A-214ENST00000621814 STK31Q9BXU1 1019 aa15.98■□□□□ 0.15
CCDC88A-214ENST00000621814 ADAMTS13Q76LX8 1427 aa15.97■□□□□ 0.15
CCDC88A-214ENST00000621814 RTL1A6NKG5 1358 aa15.97■□□□□ 0.15
CCDC88A-214ENST00000621814 CASC1Q6TDU7 716 aa15.96■□□□□ 0.15
CCDC88A-214ENST00000621814 PTPRCP08575 1304 aa15.96■□□□□ 0.15
CCDC88A-214ENST00000621814 DDIT3P35638 169 aa15.96■□□□□ 0.14
CCDC88A-214ENST00000621814 TECPR2O15040 1411 aa15.95■□□□□ 0.14
CCDC88A-214ENST00000621814 RAB3GAP1Q15042 981 aa15.95■□□□□ 0.14
CCDC88A-214ENST00000621814 ABTB2Q8N961 1025 aa15.95■□□□□ 0.14
CCDC88A-214ENST00000621814 NCLP19338 710 aaKnown RBP15.95■□□□□ 0.14
CCDC88A-214ENST00000621814 USP26Q9BXU7 913 aa15.95■□□□□ 0.14
CCDC88A-214ENST00000621814 HMMRO75330 724 aa15.94■□□□□ 0.14
CCDC88A-214ENST00000621814 RGS12O14924 1447 aa15.94■□□□□ 0.14
CCDC88A-214ENST00000621814 PTPRUQ92729 1446 aa15.94■□□□□ 0.14
CCDC88A-214ENST00000621814 FOXD4L5Q5VV16 416 aaPredicted RBP15.94■□□□□ 0.14
CCDC88A-214ENST00000621814 FOXD4L4Q8WXT5 416 aaPredicted RBP15.94■□□□□ 0.14
CCDC88A-214ENST00000621814 OVOS2A0A0J9YW53 1432 aa15.94■□□□□ 0.14
CCDC88A-214ENST00000621814 OVOS2Q6IE36 1432 aa15.94■□□□□ 0.14
CCDC88A-214ENST00000621814 NOL8Q76FK4 1167 aaKnown RBP15.93■□□□□ 0.14
CCDC88A-214ENST00000621814 ATP10DQ9P241 1426 aa15.93■□□□□ 0.14
CCDC88A-214ENST00000621814 REREQ9P2R6 1566 aa15.93■□□□□ 0.14
CCDC88A-214ENST00000621814 FAM43AQ8N2R8 423 aa15.93■□□□□ 0.14
CCDC88A-214ENST00000621814 RILPL2Q969X0 211 aa15.93■□□□□ 0.14
CCDC88A-214ENST00000621814 CRB1P82279 1406 aa15.93■□□□□ 0.14
CCDC88A-214ENST00000621814 TRIM6-TRIM34B2RNG4 842 aa15.93■□□□□ 0.14
CCDC88A-214ENST00000621814 EIF2S2P20042 333 aaKnown RBP15.93■□□□□ 0.14
CCDC88A-214ENST00000621814 RRAGDQ9NQL2 400 aaPredicted RBP15.93■□□□□ 0.14
CCDC88A-214ENST00000621814 C3P01024 1663 aa15.92■□□□□ 0.14
CCDC88A-214ENST00000621814 FLIIQ13045 1269 aa15.92■□□□□ 0.14
CCDC88A-214ENST00000621814 KIAA0232Q92628 1395 aa15.92■□□□□ 0.14
CCDC88A-214ENST00000621814 ITSN1Q15811 1721 aa15.92■□□□□ 0.14
CCDC88A-214ENST00000621814 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.92■□□□□ 0.14
CCDC88A-214ENST00000621814 GNAI2P04899 355 aa15.92■□□□□ 0.14
CCDC88A-214ENST00000621814 MON2Q7Z3U7 1717 aa15.91■□□□□ 0.14
CCDC88A-214ENST00000621814 FSD2A1L4K1 749 aa15.91■□□□□ 0.14
CCDC88A-214ENST00000621814 GNAT3A8MTJ3 354 aa15.91■□□□□ 0.14
CCDC88A-214ENST00000621814 PKP1Q13835 747 aa15.91■□□□□ 0.14
CCDC88A-214ENST00000621814 RABEP1Q15276 862 aa15.91■□□□□ 0.14
CCDC88A-214ENST00000621814 GRPEL1Q9HAV7 217 aa15.91■□□□□ 0.14
CCDC88A-214ENST00000621814 CIZ1Q9ULV3 898 aaPredicted RBP15.91■□□□□ 0.14
CCDC88A-214ENST00000621814 FLT4P35916 1363 aa15.91■□□□□ 0.14
CCDC88A-214ENST00000621814 KNDC1Q76NI1 1749 aa15.91■□□□□ 0.14
CCDC88A-214ENST00000621814 PNMA6EA0A0J9YXQ4 647 aa15.91■□□□□ 0.14
CCDC88A-214ENST00000621814 CCT4P50991 539 aaKnown RBP15.91■□□□□ 0.14
CCDC88A-214ENST00000621814 NCOA3Q9Y6Q9 1424 aa15.91■□□□□ 0.14
CCDC88A-214ENST00000621814 PLEKHG1Q9ULL1 1385 aa15.91■□□□□ 0.14
CCDC88A-214ENST00000621814 KCNA6P17658 529 aa15.91■□□□□ 0.14
CCDC88A-214ENST00000621814 MCTP1Q6DN14 999 aa15.91■□□□□ 0.14
CCDC88A-214ENST00000621814 KIF24Q5T7B8 1368 aa15.9■□□□□ 0.14
CCDC88A-214ENST00000621814 PDE1AP54750 535 aa15.9■□□□□ 0.14
CCDC88A-214ENST00000621814 GAS2L3Q86XJ1 694 aa15.9■□□□□ 0.14
CCDC88A-214ENST00000621814 ZGPATQ8N5A5 531 aaKnown RBP15.9■□□□□ 0.14
CCDC88A-214ENST00000621814 DDX49Q9Y6V7 483 aaKnown RBP15.9■□□□□ 0.14
CCDC88A-214ENST00000621814 GOLGA6L22H0YM25 854 aa15.89■□□□□ 0.13
CCDC88A-214ENST00000621814 CCDC30Q5VVM6 783 aa15.89■□□□□ 0.13
CCDC88A-214ENST00000621814 IL1RAPL2Q9NP60 686 aa15.89■□□□□ 0.13
CCDC88A-214ENST00000621814 LRRFIP2Q9Y608 721 aaKnown RBP15.89■□□□□ 0.13
CCDC88A-214ENST00000621814 SBNO1A3KN83 1393 aa15.89■□□□□ 0.13
CCDC88A-214ENST00000621814 MRE11P49959 708 aa15.89■□□□□ 0.13
CCDC88A-214ENST00000621814 IL17REQ8NFR9 667 aa15.89■□□□□ 0.13
CCDC88A-214ENST00000621814 CHAMP1Q96JM3 812 aa15.89■□□□□ 0.13
CCDC88A-214ENST00000621814 TTC21AQ8NDW8 1320 aa15.89■□□□□ 0.13
CCDC88A-214ENST00000621814 HOXC9P31274 260 aa15.88■□□□□ 0.13
CCDC88A-214ENST00000621814 USP31Q70CQ4 1352 aa15.88■□□□□ 0.13
CCDC88A-214ENST00000621814 RIMS1Q86UR5 1692 aaKnown RBP15.88■□□□□ 0.13
CCDC88A-214ENST00000621814 PEAK1Q9H792 1746 aa15.88■□□□□ 0.13
CCDC88A-214ENST00000621814 ST18O60284 1047 aa15.88■□□□□ 0.13
CCDC88A-214ENST00000621814 REC8O95072 547 aa15.88■□□□□ 0.13
CCDC88A-214ENST00000621814 MAP4K4O95819 1239 aaPredicted RBP15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 141.9 ms