RNA–Protein interactions for RNA: ENST00000620429.4

VPS11-207, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5 BASIC

Gene VPS11, Length 2,739 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-207ENST00000620429 CERS3Q8IU89 383 aa12.68□□□□□ -0.38
VPS11-207ENST00000620429 PIBF1Q8WXW3 757 aa12.68□□□□□ -0.38
VPS11-207ENST00000620429 HDAC5Q9UQL6 1122 aa12.68□□□□□ -0.38
VPS11-207ENST00000620429 AXDND1Q5T1B0 1012 aaPredicted RBP12.68□□□□□ -0.38
VPS11-207ENST00000620429 SAMD1Q6SPF0 538 aaPredicted RBP12.68□□□□□ -0.38
VPS11-207ENST00000620429 EFCC1Q9HA90 598 aa12.68□□□□□ -0.38
VPS11-207ENST00000620429 ARHGAP23Q9P227 1491 aa12.68□□□□□ -0.38
VPS11-207ENST00000620429 SBNO2Q9Y2G9 1366 aa12.68□□□□□ -0.38
VPS11-207ENST00000620429 SOX12O15370 315 aa12.68□□□□□ -0.38
VPS11-207ENST00000620429 FAM193AP78312 1265 aa12.68□□□□□ -0.38
VPS11-207ENST00000620429 TRIM6-TRIM34B2RNG4 842 aa12.67□□□□□ -0.38
VPS11-207ENST00000620429 TRIM34Q9BYJ4 488 aa12.67□□□□□ -0.38
VPS11-207ENST00000620429 NSD3Q9BZ95 1437 aa12.67□□□□□ -0.38
VPS11-207ENST00000620429 CABP2Q9NPB3 220 aa12.67□□□□□ -0.38
VPS11-207ENST00000620429 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.67□□□□□ -0.38
VPS11-207ENST00000620429 QRICH2Q9H0J4 1663 aa12.66□□□□□ -0.38
VPS11-207ENST00000620429 SLC52A1Q9NWF4 448 aa12.66□□□□□ -0.38
VPS11-207ENST00000620429 ALKQ9UM73 1620 aa12.66□□□□□ -0.38
VPS11-207ENST00000620429 BAG4O95429 457 aaKnown RBP12.66□□□□□ -0.38
VPS11-207ENST00000620429 PRIM1P49642 420 aaKnown RBP12.66□□□□□ -0.38
VPS11-207ENST00000620429 MFAP1P55081 439 aaKnown RBP12.66□□□□□ -0.38
VPS11-207ENST00000620429 FKBP5Q13451 457 aaPredicted RBP12.66□□□□□ -0.38
VPS11-207ENST00000620429 TCP11L2Q8N4U5 519 aa12.66□□□□□ -0.38
VPS11-207ENST00000620429 POLR3AO14802 1390 aaPredicted RBP12.66□□□□□ -0.38
VPS11-207ENST00000620429 NOLC1Q14978 699 aaKnown RBP eCLIP12.65□□□□□ -0.38
VPS11-207ENST00000620429 TERF2Q15554 542 aa12.65□□□□□ -0.38
VPS11-207ENST00000620429 AEBP1Q8IUX7 1158 aa12.65□□□□□ -0.38
VPS11-207ENST00000620429 RUNDC1Q96C34 613 aa12.65□□□□□ -0.38
VPS11-207ENST00000620429 SPTLC3Q9NUV7 552 aa12.65□□□□□ -0.38
VPS11-207ENST00000620429 CTIFO43310 598 aaKnown RBP12.65□□□□□ -0.38
VPS11-207ENST00000620429 ZNF622Q969S3 477 aaKnown RBP eCLIP12.64□□□□□ -0.39
VPS11-207ENST00000620429 CREBRFQ8IUR6 639 aa12.64□□□□□ -0.39
VPS11-207ENST00000620429 MYO5BQ9ULV0 1848 aa12.64□□□□□ -0.39
VPS11-207ENST00000620429 LRRC7Q96NW7 1537 aa12.64□□□□□ -0.39
VPS11-207ENST00000620429 CAVIN1Q6NZI2 390 aaKnown RBP12.63□□□□□ -0.39
VPS11-207ENST00000620429 MORC1Q86VD1 984 aa12.63□□□□□ -0.39
VPS11-207ENST00000620429 SYCP1Q15431 976 aa12.63□□□□□ -0.39
VPS11-207ENST00000620429 LRSAM1Q6UWE0 723 aa12.63□□□□□ -0.39
VPS11-207ENST00000620429 WDR63Q8IWG1 891 aa12.63□□□□□ -0.39
VPS11-207ENST00000620429 DIAPH3Q9NSV4 1193 aa12.63□□□□□ -0.39
VPS11-207ENST00000620429 TULP4Q9NRJ4 1543 aa12.63□□□□□ -0.39
VPS11-207ENST00000620429 STRCP1A6NGW2 1772 aa12.63□□□□□ -0.39
VPS11-207ENST00000620429 SSFA2P28290 1259 aa12.62□□□□□ -0.39
VPS11-207ENST00000620429 KCNG1Q9UIX4 513 aa12.62□□□□□ -0.39
VPS11-207ENST00000620429 DDX41Q9UJV9 622 aaKnown RBP12.62□□□□□ -0.39
VPS11-207ENST00000620429 MORC2Q9Y6X9 1032 aaPredicted RBP12.62□□□□□ -0.39
VPS11-207ENST00000620429 MVPQ14764 893 aaKnown RBP12.62□□□□□ -0.39
VPS11-207ENST00000620429 CTNNA3Q9UI47 895 aa12.62□□□□□ -0.39
VPS11-207ENST00000620429 STAG3Q9UJ98 1225 aa12.62□□□□□ -0.39
VPS11-207ENST00000620429 MINK1Q8N4C8 1332 aaPredicted RBP12.62□□□□□ -0.39
VPS11-207ENST00000620429 FAM177BA6PVY3 158 aa12.61□□□□□ -0.39
VPS11-207ENST00000620429 LMBRD1Q9NUN5 540 aa12.61□□□□□ -0.39
VPS11-207ENST00000620429 FEZ2Q9UHY8 353 aaPredicted RBP12.61□□□□□ -0.39
VPS11-207ENST00000620429 TMEM131LA2VDJ0 1609 aa12.61□□□□□ -0.39
VPS11-207ENST00000620429 EVC2Q86UK5 1308 aa12.61□□□□□ -0.39
VPS11-207ENST00000620429 ARHGEF28Q8N1W1 1705 aaKnown RBP12.61□□□□□ -0.39
VPS11-207ENST00000620429 PTMAP06454 111 aaKnown RBP12.61□□□□□ -0.39
VPS11-207ENST00000620429 PRAM1Q96QH2 718 aa12.61□□□□□ -0.39
VPS11-207ENST00000620429 ZKSCAN2Q63HK3 967 aa12.6□□□□□ -0.39
VPS11-207ENST00000620429 PHF23Q9BUL5 403 aaPredicted RBP12.6□□□□□ -0.39
VPS11-207ENST00000620429 DZIP1LQ8IYY4 767 aaKnown RBP12.6□□□□□ -0.39
VPS11-207ENST00000620429 APPP05067 770 aa12.59□□□□□ -0.39
VPS11-207ENST00000620429 SRPK2P78362 688 aaKnown RBP12.59□□□□□ -0.39
VPS11-207ENST00000620429 XIRP1Q702N8 1843 aaKnown RBP12.59□□□□□ -0.39
VPS11-207ENST00000620429 NWD1Q149M9 1564 aa12.59□□□□□ -0.39
VPS11-207ENST00000620429 ZFYVE9O95405 1425 aa12.58□□□□□ -0.39
VPS11-207ENST00000620429 SHPRHQ149N8 1683 aa12.58□□□□□ -0.4
VPS11-207ENST00000620429 CNPY4Q8N129 248 aa12.58□□□□□ -0.4
VPS11-207ENST00000620429 K7ELQ4 463 aaPredicted RBP12.58□□□□□ -0.4
VPS11-207ENST00000620429 RIOK3O14730 519 aaKnown RBP12.58□□□□□ -0.4
VPS11-207ENST00000620429 MYCNP04198 464 aaPredicted RBP12.58□□□□□ -0.4
VPS11-207ENST00000620429 HSPA1LP34931 641 aa12.58□□□□□ -0.4
VPS11-207ENST00000620429 FAM135BQ49AJ0 1406 aa12.58□□□□□ -0.4
VPS11-207ENST00000620429 MTHFSP49914 203 aa12.57□□□□□ -0.4
VPS11-207ENST00000620429 CHAF1AQ13111 956 aaPredicted RBP12.57□□□□□ -0.4
VPS11-207ENST00000620429 CFAP53Q96M91 514 aa12.57□□□□□ -0.4
VPS11-207ENST00000620429 YTHDC2Q9H6S0 1430 aaKnown RBP12.56□□□□□ -0.4
VPS11-207ENST00000620429 CCDC27Q2M243 656 aa12.56□□□□□ -0.4
VPS11-207ENST00000620429 MCTP1Q6DN14 999 aa12.56□□□□□ -0.4
VPS11-207ENST00000620429 SMC4Q9NTJ3 1288 aa12.56□□□□□ -0.4
VPS11-207ENST00000620429 NCBP1Q09161 790 aaKnown RBP12.55□□□□□ -0.4
VPS11-207ENST00000620429 WAPLQ7Z5K2 1190 aa12.55□□□□□ -0.4
VPS11-207ENST00000620429 ITPRIPQ8IWB1 547 aa12.55□□□□□ -0.4
VPS11-207ENST00000620429 ANKRD36BQ8N2N9 1353 aa12.55□□□□□ -0.4
VPS11-207ENST00000620429 CYP2E1P05181 493 aaPredicted RBP12.55□□□□□ -0.4
VPS11-207ENST00000620429 NUCB2P80303 420 aa12.55□□□□□ -0.4
VPS11-207ENST00000620429 CTR9Q6PD62 1173 aa12.55□□□□□ -0.4
VPS11-207ENST00000620429 KRT222Q8N1A0 295 aa12.55□□□□□ -0.4
VPS11-207ENST00000620429 TSR2Q969E8 191 aaKnown RBP12.55□□□□□ -0.4
VPS11-207ENST00000620429 GGNBP2Q9H3C7 697 aa12.55□□□□□ -0.4
VPS11-207ENST00000620429 A0A1W2PP64 1363 aa12.55□□□□□ -0.4
VPS11-207ENST00000620429 U2AF1L5P0DN76 240 aaPredicted RBP12.54□□□□□ -0.4
VPS11-207ENST00000620429 NOP2P46087 812 aaKnown RBP12.54□□□□□ -0.4
VPS11-207ENST00000620429 U2AF1Q01081 240 aaKnown RBP eCLIP12.54□□□□□ -0.4
VPS11-207ENST00000620429 HDAC1Q13547 482 aaPredicted RBP12.54□□□□□ -0.4
VPS11-207ENST00000620429 CHMP4CQ96CF2 233 aa12.54□□□□□ -0.4
VPS11-207ENST00000620429 FAM53CQ9NYF3 392 aa12.54□□□□□ -0.4
VPS11-207ENST00000620429 GPT2Q8TD30 523 aa12.54□□□□□ -0.4
VPS11-207ENST00000620429 ZBTB9Q96C00 473 aa12.54□□□□□ -0.4
VPS11-207ENST00000620429 KIF2CQ99661 725 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms