RNA–Protein interactions for RNA: ENST00000620429.4

VPS11-207, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5 BASIC

Gene VPS11, Length 2,739 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-207ENST00000620429 NISCHQ9Y2I1 1504 aa20.47■□□□□ 0.87
VPS11-207ENST00000620429 CCDC180Q9P1Z9 1646 aa18.52■□□□□ 0.56
VPS11-207ENST00000620429 ABCC9O60706 1549 aa18.2■□□□□ 0.5
VPS11-207ENST00000620429 PELP1Q8IZL8 1130 aaKnown RBP18.11■□□□□ 0.49
VPS11-207ENST00000620429 MYT1Q01538 1121 aa17.67■□□□□ 0.42
VPS11-207ENST00000620429 HRCP23327 699 aa17.59■□□□□ 0.41
VPS11-207ENST00000620429 RB1CC1Q8TDY2 1594 aa17.59■□□□□ 0.41
VPS11-207ENST00000620429 NACADO15069 1562 aa17.48■□□□□ 0.39
VPS11-207ENST00000620429 SHROOM4Q9ULL8 1493 aa17.36■□□□□ 0.37
VPS11-207ENST00000620429 MYO15BQ96JP2 1530 aa17.34■□□□□ 0.37
VPS11-207ENST00000620429 ZCCHC6Q5VYS8 1495 aaKnown RBP17.26■□□□□ 0.35
VPS11-207ENST00000620429 DCAF8L2P0C7V8 631 aa17.13■□□□□ 0.33
VPS11-207ENST00000620429 UNC13AQ9UPW8 1703 aa17.12■□□□□ 0.33
VPS11-207ENST00000620429 DNAJC5BQ9UF47 199 aa17.1■□□□□ 0.33
VPS11-207ENST00000620429 DCAF1Q9Y4B6 1507 aa16.99■□□□□ 0.31
VPS11-207ENST00000620429 PPARGC1BQ86YN6 1023 aaKnown RBP16.98■□□□□ 0.31
VPS11-207ENST00000620429 BICRAQ9NZM4 1560 aa16.97■□□□□ 0.31
VPS11-207ENST00000620429 SCAF1Q9H7N4 1312 aaKnown RBP16.93■□□□□ 0.3
VPS11-207ENST00000620429 SUPT5HO00267 1087 aaKnown RBP16.91■□□□□ 0.3
VPS11-207ENST00000620429 TTBK1Q5TCY1 1321 aaPredicted RBP16.85■□□□□ 0.29
VPS11-207ENST00000620429 PABPN1Q86U42 306 aaKnown RBP eCLIP16.76■□□□□ 0.27
VPS11-207ENST00000620429 PCGF6Q9BYE7 350 aa16.73■□□□□ 0.27
VPS11-207ENST00000620429 CC2D2AQ9P2K1 1620 aa16.61■□□□□ 0.25
VPS11-207ENST00000620429 EIF4G1Q04637 1599 aaKnown RBP16.57■□□□□ 0.24
VPS11-207ENST00000620429 CHIC1Q5VXU3 224 aa16.55■□□□□ 0.24
VPS11-207ENST00000620429 CECR2Q9BXF3 1484 aa16.54■□□□□ 0.24
VPS11-207ENST00000620429 SCRIBQ14160 1630 aa16.48■□□□□ 0.23
VPS11-207ENST00000620429 ACIN1Q9UKV3 1341 aaKnown RBP16.37■□□□□ 0.21
VPS11-207ENST00000620429 ZEB1P37275 1124 aaPredicted RBP16.36■□□□□ 0.21
VPS11-207ENST00000620429 NEUROD1Q13562 356 aa16.21■□□□□ 0.19
VPS11-207ENST00000620429 BCL11AQ9H165 835 aa16.21■□□□□ 0.19
VPS11-207ENST00000620429 GTF3C3Q9Y5Q9 886 aa16.19■□□□□ 0.18
VPS11-207ENST00000620429 TRIM26Q12899 539 aaPredicted RBP16.18■□□□□ 0.18
VPS11-207ENST00000620429 CENPBP07199 599 aaPredicted RBP16.16■□□□□ 0.18
VPS11-207ENST00000620429 LOC105371045A0A1W2PR82 267 aa16.14■□□□□ 0.17
VPS11-207ENST00000620429 RSF1Q96T23 1441 aaPredicted RBP16.13■□□□□ 0.17
VPS11-207ENST00000620429 CUX2O14529 1486 aa16.11■□□□□ 0.17
VPS11-207ENST00000620429 PRKCSHP14314 528 aaPredicted RBP16.1■□□□□ 0.17
VPS11-207ENST00000620429 DNAJC5Q9H3Z4 198 aa16.06■□□□□ 0.16
VPS11-207ENST00000620429 NCAPD3P42695 1498 aa16.06■□□□□ 0.16
VPS11-207ENST00000620429 FAM9AQ8IZU1 332 aaPredicted RBP16.03■□□□□ 0.16
VPS11-207ENST00000620429 HMGXB3Q12766 1538 aa16■□□□□ 0.15
VPS11-207ENST00000620429 SMARCA2P51531 1590 aa15.97■□□□□ 0.15
VPS11-207ENST00000620429 MROH2BQ7Z745 1585 aa15.94■□□□□ 0.14
VPS11-207ENST00000620429 ATAD2BQ9ULI0 1458 aa15.88■□□□□ 0.13
VPS11-207ENST00000620429 PEG3Q9GZU2 1588 aa15.88■□□□□ 0.13
VPS11-207ENST00000620429 SMARCA4P51532 1647 aa15.88■□□□□ 0.13
VPS11-207ENST00000620429 ERICH6Q7L0X2 663 aa15.87■□□□□ 0.13
VPS11-207ENST00000620429 ANP32EQ9BTT0 268 aa15.83■□□□□ 0.12
VPS11-207ENST00000620429 WIZO95785 1651 aa15.83■□□□□ 0.12
VPS11-207ENST00000620429 ERCC6Q03468 1493 aa15.83■□□□□ 0.12
VPS11-207ENST00000620429 BAZ1AQ9NRL2 1556 aaPredicted RBP15.82■□□□□ 0.12
VPS11-207ENST00000620429 LAMC3Q9Y6N6 1575 aa15.78■□□□□ 0.12
VPS11-207ENST00000620429 APLP2Q06481 763 aa15.74■□□□□ 0.11
VPS11-207ENST00000620429 BAZ1BQ9UIG0 1483 aaKnown RBP15.71■□□□□ 0.11
VPS11-207ENST00000620429 THOC2Q8NI27 1593 aaKnown RBP15.71■□□□□ 0.11
VPS11-207ENST00000620429 TRIM41Q8WV44 630 aa15.71■□□□□ 0.11
VPS11-207ENST00000620429 DIEXFQ68CQ4 756 aaKnown RBP15.68■□□□□ 0.1
VPS11-207ENST00000620429 PDS5BQ9NTI5 1447 aa15.61■□□□□ 0.09
VPS11-207ENST00000620429 CSRNP3Q8WYN3 585 aa15.59■□□□□ 0.09
VPS11-207ENST00000620429 NESP48681 1621 aa15.57■□□□□ 0.08
VPS11-207ENST00000620429 EHMT2Q96KQ7 1210 aa15.55■□□□□ 0.08
VPS11-207ENST00000620429 TOP2AP11388 1531 aaKnown RBP15.55■□□□□ 0.08
VPS11-207ENST00000620429 KIF21AQ7Z4S6 1674 aa15.54■□□□□ 0.08
VPS11-207ENST00000620429 CCDC88BA6NC98 1476 aa15.51■□□□□ 0.07
VPS11-207ENST00000620429 WDR62O43379 1518 aa15.49■□□□□ 0.07
VPS11-207ENST00000620429 CLSPNQ9HAW4 1339 aa15.47■□□□□ 0.07
VPS11-207ENST00000620429 MRC2Q9UBG0 1479 aa15.47■□□□□ 0.07
VPS11-207ENST00000620429 CADPSQ9ULU8 1353 aa15.46■□□□□ 0.07
VPS11-207ENST00000620429 TSHZ2Q9NRE2 1034 aa15.42■□□□□ 0.06
VPS11-207ENST00000620429 ABCC8Q09428 1581 aa15.4■□□□□ 0.06
VPS11-207ENST00000620429 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.38■□□□□ 0.05
VPS11-207ENST00000620429 CCER1Q8TC90 406 aaPredicted RBP15.37■□□□□ 0.05
VPS11-207ENST00000620429 CEP164Q9UPV0 1460 aa15.34■□□□□ 0.05
VPS11-207ENST00000620429 PRDM2Q13029 1718 aa15.33■□□□□ 0.05
VPS11-207ENST00000620429 YTHDC1Q96MU7 727 aaKnown RBP15.33■□□□□ 0.04
VPS11-207ENST00000620429 SUPT16HQ9Y5B9 1047 aaKnown RBP15.3■□□□□ 0.04
VPS11-207ENST00000620429 CFTRP13569 1480 aa15.3■□□□□ 0.04
VPS11-207ENST00000620429 ZNF316A6NFI3 1004 aaPredicted RBP15.26■□□□□ 0.03
VPS11-207ENST00000620429 FANCD2Q9BXW9 1451 aa15.26■□□□□ 0.03
VPS11-207ENST00000620429 SOGA1O94964 1423 aa15.22■□□□□ 0.03
VPS11-207ENST00000620429 MIER1Q8N108 512 aa15.18■□□□□ 0.02
VPS11-207ENST00000620429 RUSC2Q8N2Y8 1516 aa15.17■□□□□ 0.02
VPS11-207ENST00000620429 WRNQ14191 1432 aaPredicted RBP eCLIP15.15■□□□□ 0.02
VPS11-207ENST00000620429 URB2Q14146 1524 aaKnown RBP15.12■□□□□ 0.01
VPS11-207ENST00000620429 OSCARQ8IYS5 282 aa15.11■□□□□ 0.01
VPS11-207ENST00000620429 IFT140Q96RY7 1462 aa15.1■□□□□ 0.01
VPS11-207ENST00000620429 SYNJ1O43426 1573 aa15.09■□□□□ 0.01
VPS11-207ENST00000620429 ANO8Q9HCE9 1232 aaPredicted RBP15.07■□□□□ 0
VPS11-207ENST00000620429 MYT1LQ9UL68 1186 aa15.06■□□□□ 0
VPS11-207ENST00000620429 WDR97A6NE52 1622 aa15.04■□□□□ -0
VPS11-207ENST00000620429 UBTFP17480 764 aaKnown RBP15.01□□□□□ -0.01
VPS11-207ENST00000620429 UBE2Q2Q8WVN8 375 aa15.01□□□□□ -0.01
VPS11-207ENST00000620429 CEP162Q5TB80 1403 aa15.01□□□□□ -0.01
VPS11-207ENST00000620429 DNMBPQ6XZF7 1577 aa15□□□□□ -0.01
VPS11-207ENST00000620429 RIMBP3CA6NJZ7 1639 aa14.99□□□□□ -0.01
VPS11-207ENST00000620429 RIMBP3BA6NNM3 1639 aa14.99□□□□□ -0.01
VPS11-207ENST00000620429 RIMBP3Q9UFD9 1639 aa14.99□□□□□ -0.01
VPS11-207ENST00000620429 EEA1Q15075 1411 aa14.99□□□□□ -0.01
VPS11-207ENST00000620429 RBM19Q9Y4C8 960 aaKnown RBP14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms