RNA–Protein interactions for RNA: ENST00000606715.3

SHANK2-219, Transcript of SH3 and multiple ankyrin repeat domains 2, humanhuman

Gene SHANK2, Length 5,738 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK2-219ENST00000606715 OLFM4Q6UX06 510 aa13.16□□□□□ -0.3
SHANK2-219ENST00000606715 PPM1FP49593 454 aaPredicted RBP13.16□□□□□ -0.3
SHANK2-219ENST00000606715 ZNF652Q9Y2D9 606 aa13.16□□□□□ -0.3
SHANK2-219ENST00000606715 NPHP3Q7Z494 1330 aa13.16□□□□□ -0.3
SHANK2-219ENST00000606715 ABCA5Q8WWZ7 1642 aa13.16□□□□□ -0.3
SHANK2-219ENST00000606715 PANK1Q8TE04 598 aa13.16□□□□□ -0.3
SHANK2-219ENST00000606715 RIMS2Q9UQ26 1411 aa13.15□□□□□ -0.3
SHANK2-219ENST00000606715 IGHMBP2P38935 993 aaKnown RBP13.15□□□□□ -0.3
SHANK2-219ENST00000606715 SASS6Q6UVJ0 657 aa13.15□□□□□ -0.3
SHANK2-219ENST00000606715 LNPKQ9C0E8 428 aa13.15□□□□□ -0.3
SHANK2-219ENST00000606715 NEO1Q92859 1461 aa13.15□□□□□ -0.3
SHANK2-219ENST00000606715 HOMER1Q86YM7 354 aa13.14□□□□□ -0.31
SHANK2-219ENST00000606715 TTC21AQ8NDW8 1320 aa13.14□□□□□ -0.31
SHANK2-219ENST00000606715 FOXO3O43524 673 aa13.14□□□□□ -0.31
SHANK2-219ENST00000606715 MATR3P43243 847 aaKnown RBP eCLIP13.14□□□□□ -0.31
SHANK2-219ENST00000606715 WDR78Q5VTH9 848 aa13.14□□□□□ -0.31
SHANK2-219ENST00000606715 TMOD3Q9NYL9 352 aa13.14□□□□□ -0.31
SHANK2-219ENST00000606715 SHANK2Q9UPX8 1470 aa13.14□□□□□ -0.31
SHANK2-219ENST00000606715 ZNF592Q92610 1267 aa13.14□□□□□ -0.31
SHANK2-219ENST00000606715 ZHX3Q9H4I2 956 aa13.14□□□□□ -0.31
SHANK2-219ENST00000606715 RAI14Q9P0K7 980 aa13.14□□□□□ -0.31
SHANK2-219ENST00000606715 CDR1P51861 262 aa13.13□□□□□ -0.31
SHANK2-219ENST00000606715 VSIG10Q8N0Z9 540 aa13.13□□□□□ -0.31
SHANK2-219ENST00000606715 ZNF76P36508 570 aa13.13□□□□□ -0.31
SHANK2-219ENST00000606715 ZSCAN25Q6NSZ9 544 aa13.13□□□□□ -0.31
SHANK2-219ENST00000606715 BCL11BQ9C0K0 894 aaPredicted RBP13.13□□□□□ -0.31
SHANK2-219ENST00000606715 TMPOP42166 694 aaKnown RBP13.13□□□□□ -0.31
SHANK2-219ENST00000606715 SCLT1Q96NL6 688 aa13.13□□□□□ -0.31
SHANK2-219ENST00000606715 ATF7IPQ6VMQ6 1270 aa13.13□□□□□ -0.31
SHANK2-219ENST00000606715 PUS7Q96PZ0 661 aaKnown RBP13.13□□□□□ -0.31
SHANK2-219ENST00000606715 TRIM21P19474 475 aaKnown RBP13.12□□□□□ -0.31
SHANK2-219ENST00000606715 ZNF219Q9P2Y4 722 aaPredicted RBP13.12□□□□□ -0.31
SHANK2-219ENST00000606715 TEX13AQ9BXU3 409 aaPredicted RBP13.12□□□□□ -0.31
SHANK2-219ENST00000606715 IFT57Q9NWB7 429 aa13.12□□□□□ -0.31
SHANK2-219ENST00000606715 NOB1Q9ULX3 412 aaKnown RBP13.12□□□□□ -0.31
SHANK2-219ENST00000606715 EXOC5O00471 708 aa13.12□□□□□ -0.31
SHANK2-219ENST00000606715 MAGEC2Q9UBF1 373 aaPredicted RBP13.12□□□□□ -0.31
SHANK2-219ENST00000606715 NEBLO76041 1014 aa13.11□□□□□ -0.31
SHANK2-219ENST00000606715 HSP90AB3PQ58FF7 597 aa13.11□□□□□ -0.31
SHANK2-219ENST00000606715 TAF7Q15545 349 aaPredicted RBP13.11□□□□□ -0.31
SHANK2-219ENST00000606715 TRAPPC8Q9Y2L5 1435 aa13.11□□□□□ -0.31
SHANK2-219ENST00000606715 ZMYM3Q14202 1370 aa13.11□□□□□ -0.31
SHANK2-219ENST00000606715 CRACR2BQ8N4Y2 399 aaPredicted RBP13.11□□□□□ -0.31
SHANK2-219ENST00000606715 NUCB2P80303 420 aa13.11□□□□□ -0.31
SHANK2-219ENST00000606715 C16orf71Q8IYS4 520 aaPredicted RBP13.11□□□□□ -0.31
SHANK2-219ENST00000606715 TSR2Q969E8 191 aaKnown RBP13.1□□□□□ -0.31
SHANK2-219ENST00000606715 RUFY1Q96T51 708 aa13.1□□□□□ -0.31
SHANK2-219ENST00000606715 CCDC69A6NI79 296 aa13.1□□□□□ -0.31
SHANK2-219ENST00000606715 MCM2P49736 904 aa13.1□□□□□ -0.31
SHANK2-219ENST00000606715 RPAP2Q8IXW5 612 aaPredicted RBP13.1□□□□□ -0.31
SHANK2-219ENST00000606715 SIL1Q9H173 461 aa13.1□□□□□ -0.31
SHANK2-219ENST00000606715 ANKRD36BQ8N2N9 1353 aa13.1□□□□□ -0.31
SHANK2-219ENST00000606715 NME9Q86XW9 330 aa13.1□□□□□ -0.31
SHANK2-219ENST00000606715 TCOF1Q13428 1488 aaKnown RBP13.09□□□□□ -0.31
SHANK2-219ENST00000606715 TRIM22Q8IYM9 498 aa13.09□□□□□ -0.31
SHANK2-219ENST00000606715 SDF4Q9BRK5 362 aa13.09□□□□□ -0.31
SHANK2-219ENST00000606715 LRP2BPQ9P2M1 347 aa13.09□□□□□ -0.31
SHANK2-219ENST00000606715 DESP17661 470 aa13.09□□□□□ -0.31
SHANK2-219ENST00000606715 RPGRQ92834 1020 aaKnown RBP13.09□□□□□ -0.31
SHANK2-219ENST00000606715 LRRCC1Q9C099 1032 aa13.09□□□□□ -0.31
SHANK2-219ENST00000606715 ANKIB1Q9P2G1 1089 aa13.09□□□□□ -0.31
SHANK2-219ENST00000606715 HSP90AA2PQ14568 343 aaPredicted RBP13.09□□□□□ -0.31
SHANK2-219ENST00000606715 LARP1Q6PKG0 1096 aaKnown RBP13.09□□□□□ -0.31
SHANK2-219ENST00000606715 NUP133Q8WUM0 1156 aa13.09□□□□□ -0.31
SHANK2-219ENST00000606715 CDCA7LQ96GN5 454 aa13.09□□□□□ -0.31
SHANK2-219ENST00000606715 CALRP27797 417 aaKnown RBP13.09□□□□□ -0.31
SHANK2-219ENST00000606715 GRM1Q13255 1194 aa13.09□□□□□ -0.31
SHANK2-219ENST00000606715 CEP126Q9P2H0 1117 aa13.09□□□□□ -0.31
SHANK2-219ENST00000606715 LMTK3Q96Q04 1460 aa13.08□□□□□ -0.31
SHANK2-219ENST00000606715 CCDC97Q96F63 343 aaPredicted RBP13.08□□□□□ -0.31
SHANK2-219ENST00000606715 NAT10Q9H0A0 1025 aaKnown RBP13.08□□□□□ -0.31
SHANK2-219ENST00000606715 C19orf44Q9H6X5 657 aa13.08□□□□□ -0.31
SHANK2-219ENST00000606715 PDILTQ8N807 584 aa13.08□□□□□ -0.32
SHANK2-219ENST00000606715 ALDH1L2Q3SY69 923 aa13.08□□□□□ -0.32
SHANK2-219ENST00000606715 DNAI2Q9GZS0 605 aa13.08□□□□□ -0.32
SHANK2-219ENST00000606715 TDO2P48775 406 aa13.08□□□□□ -0.32
SHANK2-219ENST00000606715 FKBP4Q02790 459 aaKnown RBP eCLIP13.08□□□□□ -0.32
SHANK2-219ENST00000606715 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.08□□□□□ -0.32
SHANK2-219ENST00000606715 DISP1Q96F81 1524 aa13.08□□□□□ -0.32
SHANK2-219ENST00000606715 MYO6Q9UM54 1294 aa13.08□□□□□ -0.32
SHANK2-219ENST00000606715 MVPQ14764 893 aaKnown RBP13.07□□□□□ -0.32
SHANK2-219ENST00000606715 C22orf23Q9BZE7 217 aa13.07□□□□□ -0.32
SHANK2-219ENST00000606715 CHMP5Q9NZZ3 219 aa13.07□□□□□ -0.32
SHANK2-219ENST00000606715 USP5P45974 858 aa13.07□□□□□ -0.32
SHANK2-219ENST00000606715 TNIP1Q15025 636 aa13.07□□□□□ -0.32
SHANK2-219ENST00000606715 ZFYVE16Q7Z3T8 1539 aa13.07□□□□□ -0.32
SHANK2-219ENST00000606715 IFNL2Q8IZJ0 200 aa13.07□□□□□ -0.32
SHANK2-219ENST00000606715 AK7Q96M32 723 aa13.07□□□□□ -0.32
SHANK2-219ENST00000606715 ACEP12821 1306 aa13.06□□□□□ -0.32
SHANK2-219ENST00000606715 CCDC85AQ96PX6 553 aaPredicted RBP13.06□□□□□ -0.32
SHANK2-219ENST00000606715 CAVIN4Q5BKX8 364 aa13.06□□□□□ -0.32
SHANK2-219ENST00000606715 PPP4R3AQ6IN85 833 aa13.06□□□□□ -0.32
SHANK2-219ENST00000606715 CAGE1Q8TC20 777 aa13.06□□□□□ -0.32
SHANK2-219ENST00000606715 ZNF287Q9HBT7 754 aa13.06□□□□□ -0.32
SHANK2-219ENST00000606715 DUSP27Q5VZP5 1158 aa13.05□□□□□ -0.32
SHANK2-219ENST00000606715 FMNL2Q96PY5 1086 aa13.05□□□□□ -0.32
SHANK2-219ENST00000606715 UBAC1Q9BSL1 405 aa13.05□□□□□ -0.32
SHANK2-219ENST00000606715 SPINK5Q9NQ38 1064 aaPredicted RBP13.05□□□□□ -0.32
SHANK2-219ENST00000606715 PTCD1O75127 700 aaKnown RBP13.05□□□□□ -0.32
SHANK2-219ENST00000606715 SSBP05455 408 aaKnown RBP eCLIP13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms